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Sed0027624 (gene) of Chayote v1 genome

Gene IDSed0027624
OrganismSechium edule (Chayote v1)
DescriptionCoatomer subunit zeta
Genome locationLG05:30821957..30827666
RNA-Seq ExpressionSed0027624
SyntenySed0027624
Gene Ontology termsGO:0006886 - intracellular protein transport (biological process)
GO:0006890 - retrograde vesicle-mediated transport, Golgi to endoplasmic reticulum (biological process)
GO:0006891 - intra-Golgi vesicle-mediated transport (biological process)
GO:0000139 - Golgi membrane (cellular component)
GO:0030126 - COPI vesicle coat (cellular component)
InterPro domainsIPR011012 - Longin-like domain superfamily
IPR022775 - AP complex, mu/sigma subunit
IPR039652 - Coatomer subunit zeta


Homology Show/hide homology
GenBank top hitse value%identityAlignment
KAA0038809.1 SNARE-like superfamily protein [Cucumis melo var. makuwa]9.5e-7495.24Show/hide
Query:  MLLAVLIANSVGNILVERFHGVPAEERLHWRSFLVKLGADNLKGAKNEELYVASHKSVYIVYTVLGDVAVYVVGKDEYDELSLSEVIFVITSSIKDACGK
        MLLAVLIANSVGNILVERFHGVPAEERLHWRSFLVKLGADNLKGAKNEELYVASHKSVYIVYTVLGD+AVYVVGKDEYDEL+L+EVIFVITS+IKDACGK
Subjt:  MLLAVLIANSVGNILVERFHGVPAEERLHWRSFLVKLGADNLKGAKNEELYVASHKSVYIVYTVLGDVAVYVVGKDEYDELSLSEVIFVITSSIKDACGK

Query:  VPTERLFLDKYGKICLCLDEIVWTGILENTDKDTIKRLIRLKPPNEF
         PTERLFLDKYGKICLCLDEIVWTGILENT+KD IKRLIRLKPPNEF
Subjt:  VPTERLFLDKYGKICLCLDEIVWTGILENTDKDTIKRLIRLKPPNEF

XP_008466411.1 PREDICTED: uncharacterized protein LOC103503824 [Cucumis melo]7.2e-7495.92Show/hide
Query:  MLLAVLIANSVGNILVERFHGVPAEERLHWRSFLVKLGADNLKGAKNEELYVASHKSVYIVYTVLGDVAVYVVGKDEYDELSLSEVIFVITSSIKDACGK
        MLLAVLIANSVGNILVERFHGVPAEERLHWRSFLVKLGADNLKGAKNEELYVASHKSVYIVYTVLGDVAVYVVGKDEYDEL+L+EVIFVITS+IKDACGK
Subjt:  MLLAVLIANSVGNILVERFHGVPAEERLHWRSFLVKLGADNLKGAKNEELYVASHKSVYIVYTVLGDVAVYVVGKDEYDELSLSEVIFVITSSIKDACGK

Query:  VPTERLFLDKYGKICLCLDEIVWTGILENTDKDTIKRLIRLKPPNEF
         PTERLFLDKYGKICLCLDEIVWTGILENT+KD IKRLIRLKPPNEF
Subjt:  VPTERLFLDKYGKICLCLDEIVWTGILENTDKDTIKRLIRLKPPNEF

XP_022134177.1 uncharacterized protein LOC111006502 [Momordica charantia]1.6e-7395.92Show/hide
Query:  MLLAVLIANSVGNILVERFHGVPAEERLHWRSFLVKLGADNLKGAKNEELYVASHKSVYIVYTVLGDVAVYVVGKDEYDELSLSEVIFVITSSIKDACGK
        MLLAVLIANSVGNILVERFHGVPAEERLHWRSFLVKLGADNLKGAKNEELYVASHKSVYIVYTVLGDVAVYVVGKDEYDEL+L+EVIFVITSSIKDACGK
Subjt:  MLLAVLIANSVGNILVERFHGVPAEERLHWRSFLVKLGADNLKGAKNEELYVASHKSVYIVYTVLGDVAVYVVGKDEYDELSLSEVIFVITSSIKDACGK

Query:  VPTERLFLDKYGKICLCLDEIVWTGILENTDKDTIKRLIRLKPPNEF
         PTERLFLDKYGKICLCLDEIVWTGILENT+KD IKRLIRLKPP EF
Subjt:  VPTERLFLDKYGKICLCLDEIVWTGILENTDKDTIKRLIRLKPPNEF

XP_022936551.1 uncharacterized protein LOC111443125 [Cucurbita moschata]6.1e-7394.56Show/hide
Query:  MLLAVLIANSVGNILVERFHGVPAEERLHWRSFLVKLGADNLKGAKNEELYVASHKSVYIVYTVLGDVAVYVVGKDEYDELSLSEVIFVITSSIKDACGK
        MLLAVLIANSVGNILVERFHGVPAEERLHWRSFLVKLGADNLKGAKNEEL+VASHKSVYIVYTVLGDVAVYVVGKDEYDEL+L+EVIFV+TSSIKDACGK
Subjt:  MLLAVLIANSVGNILVERFHGVPAEERLHWRSFLVKLGADNLKGAKNEELYVASHKSVYIVYTVLGDVAVYVVGKDEYDELSLSEVIFVITSSIKDACGK

Query:  VPTERLFLDKYGKICLCLDEIVWTGILENTDKDTIKRLIRLKPPNEF
         PTER FLDKYGKICLCLDEIVWTGILENT+KD IKRLIRLKPPNEF
Subjt:  VPTERLFLDKYGKICLCLDEIVWTGILENTDKDTIKRLIRLKPPNEF

XP_038896955.1 TSET complex member tstD [Benincasa hispida]1.2e-7395.92Show/hide
Query:  MLLAVLIANSVGNILVERFHGVPAEERLHWRSFLVKLGADNLKGAKNEELYVASHKSVYIVYTVLGDVAVYVVGKDEYDELSLSEVIFVITSSIKDACGK
        MLLAVLIANSVGNILVERFHGVPAEERLHWRSFLVKLGADNLKGAKNEELYVASHKSVYIVYTVLGDVAVYVVGKDEYDEL+L+EVIFVITS+IKDACGK
Subjt:  MLLAVLIANSVGNILVERFHGVPAEERLHWRSFLVKLGADNLKGAKNEELYVASHKSVYIVYTVLGDVAVYVVGKDEYDELSLSEVIFVITSSIKDACGK

Query:  VPTERLFLDKYGKICLCLDEIVWTGILENTDKDTIKRLIRLKPPNEF
         PTERLFLDKYGKICLCLDEIVWTGILENT+KD IKRLIRLKPPNEF
Subjt:  VPTERLFLDKYGKICLCLDEIVWTGILENTDKDTIKRLIRLKPPNEF

TrEMBL top hitse value%identityAlignment
A0A1S3CRC6 Coatomer subunit zeta3.5e-7495.92Show/hide
Query:  MLLAVLIANSVGNILVERFHGVPAEERLHWRSFLVKLGADNLKGAKNEELYVASHKSVYIVYTVLGDVAVYVVGKDEYDELSLSEVIFVITSSIKDACGK
        MLLAVLIANSVGNILVERFHGVPAEERLHWRSFLVKLGADNLKGAKNEELYVASHKSVYIVYTVLGDVAVYVVGKDEYDEL+L+EVIFVITS+IKDACGK
Subjt:  MLLAVLIANSVGNILVERFHGVPAEERLHWRSFLVKLGADNLKGAKNEELYVASHKSVYIVYTVLGDVAVYVVGKDEYDELSLSEVIFVITSSIKDACGK

Query:  VPTERLFLDKYGKICLCLDEIVWTGILENTDKDTIKRLIRLKPPNEF
         PTERLFLDKYGKICLCLDEIVWTGILENT+KD IKRLIRLKPPNEF
Subjt:  VPTERLFLDKYGKICLCLDEIVWTGILENTDKDTIKRLIRLKPPNEF

A0A5A7TBS4 Coatomer subunit zeta4.6e-7495.24Show/hide
Query:  MLLAVLIANSVGNILVERFHGVPAEERLHWRSFLVKLGADNLKGAKNEELYVASHKSVYIVYTVLGDVAVYVVGKDEYDELSLSEVIFVITSSIKDACGK
        MLLAVLIANSVGNILVERFHGVPAEERLHWRSFLVKLGADNLKGAKNEELYVASHKSVYIVYTVLGD+AVYVVGKDEYDEL+L+EVIFVITS+IKDACGK
Subjt:  MLLAVLIANSVGNILVERFHGVPAEERLHWRSFLVKLGADNLKGAKNEELYVASHKSVYIVYTVLGDVAVYVVGKDEYDELSLSEVIFVITSSIKDACGK

Query:  VPTERLFLDKYGKICLCLDEIVWTGILENTDKDTIKRLIRLKPPNEF
         PTERLFLDKYGKICLCLDEIVWTGILENT+KD IKRLIRLKPPNEF
Subjt:  VPTERLFLDKYGKICLCLDEIVWTGILENTDKDTIKRLIRLKPPNEF

A0A5D3E691 Coatomer subunit zeta3.5e-7495.92Show/hide
Query:  MLLAVLIANSVGNILVERFHGVPAEERLHWRSFLVKLGADNLKGAKNEELYVASHKSVYIVYTVLGDVAVYVVGKDEYDELSLSEVIFVITSSIKDACGK
        MLLAVLIANSVGNILVERFHGVPAEERLHWRSFLVKLGADNLKGAKNEELYVASHKSVYIVYTVLGDVAVYVVGKDEYDEL+L+EVIFVITS+IKDACGK
Subjt:  MLLAVLIANSVGNILVERFHGVPAEERLHWRSFLVKLGADNLKGAKNEELYVASHKSVYIVYTVLGDVAVYVVGKDEYDELSLSEVIFVITSSIKDACGK

Query:  VPTERLFLDKYGKICLCLDEIVWTGILENTDKDTIKRLIRLKPPNEF
         PTERLFLDKYGKICLCLDEIVWTGILENT+KD IKRLIRLKPPNEF
Subjt:  VPTERLFLDKYGKICLCLDEIVWTGILENTDKDTIKRLIRLKPPNEF

A0A6J1BYX2 Coatomer subunit zeta7.8e-7495.92Show/hide
Query:  MLLAVLIANSVGNILVERFHGVPAEERLHWRSFLVKLGADNLKGAKNEELYVASHKSVYIVYTVLGDVAVYVVGKDEYDELSLSEVIFVITSSIKDACGK
        MLLAVLIANSVGNILVERFHGVPAEERLHWRSFLVKLGADNLKGAKNEELYVASHKSVYIVYTVLGDVAVYVVGKDEYDEL+L+EVIFVITSSIKDACGK
Subjt:  MLLAVLIANSVGNILVERFHGVPAEERLHWRSFLVKLGADNLKGAKNEELYVASHKSVYIVYTVLGDVAVYVVGKDEYDELSLSEVIFVITSSIKDACGK

Query:  VPTERLFLDKYGKICLCLDEIVWTGILENTDKDTIKRLIRLKPPNEF
         PTERLFLDKYGKICLCLDEIVWTGILENT+KD IKRLIRLKPP EF
Subjt:  VPTERLFLDKYGKICLCLDEIVWTGILENTDKDTIKRLIRLKPPNEF

A0A6J1IMX0 Coatomer subunit zeta3.0e-7394.56Show/hide
Query:  MLLAVLIANSVGNILVERFHGVPAEERLHWRSFLVKLGADNLKGAKNEELYVASHKSVYIVYTVLGDVAVYVVGKDEYDELSLSEVIFVITSSIKDACGK
        MLLAVLIANSVGNILVERFHGVPAEERLHWRSFLVKLGADNLKGAKNEEL+VASHKSVYIVYTVLGDVAVYVVGKDEYDEL+L+EVIFV+TSSIKDACGK
Subjt:  MLLAVLIANSVGNILVERFHGVPAEERLHWRSFLVKLGADNLKGAKNEELYVASHKSVYIVYTVLGDVAVYVVGKDEYDELSLSEVIFVITSSIKDACGK

Query:  VPTERLFLDKYGKICLCLDEIVWTGILENTDKDTIKRLIRLKPPNEF
         PTER FLDKYGKICLCLDEIVWTGILENT+KD IKRLIRLKPPNEF
Subjt:  VPTERLFLDKYGKICLCLDEIVWTGILENTDKDTIKRLIRLKPPNEF

SwissProt top hitse value%identityAlignment
C0HLF1 TSET complex member tstD4.6e-1532.64Show/hide
Query:  MLLAVLIANSVGNILVERFH-GVPAEERLHWRSFLVKLGADNLKGAKNEELYVASHKSVYIVYTVLGDVAVYVVGKDEYDELSLSEVIFVITSSIKDACG
        M+ ++LI N+ GNI+  +++  +  E++  +   L +   D    +KNE+  V        V+T +GD+ +++ G +E DEL+LS+V F I  S+KD C 
Subjt:  MLLAVLIANSVGNILVERFH-GVPAEERLHWRSFLVKLGADNLKGAKNEELYVASHKSVYIVYTVLGDVAVYVVGKDEYDELSLSEVIFVITSSIKDACG

Query:  KV-PTERLFLDKYGKICLCLDEIVWTGILENTDKDTIKRLIRLK
        K   TE+ F+++  K  L LDEI+  G L+    ++I+    LK
Subjt:  KV-PTERLFLDKYGKICLCLDEIVWTGILENTDKDTIKRLIRLK

Q54CA7 Probable coatomer subunit zeta-B1.7e-0429.5Show/hide
Query:  AVLIANSVGNILVERFHGVPAE--ERLHWRSFLVKLGADNLKGAKNEELYVASHKSVYIVYTVLGDVAVYVVGKD-EYDELSLSEVIFVITSSIKDACGK
        A+++ ++ G  L   F+  P      L  +    KL  +  K   N EL +  +K   ++ +   DV ++VVG     +EL+L +V+  + S  K AC  
Subjt:  AVLIANSVGNILVERFHGVPAE--ERLHWRSFLVKLGADNLKGAKNEELYVASHKSVYIVYTVLGDVAVYVVGKD-EYDELSLSEVIFVITSSIKDACGK

Query:  ----VPTERLFLDKYGKICLCLDEIVWTGILENTDKDTI
            + T++ FL+ Y  I L +DEIV  GI+   D++TI
Subjt:  ----VPTERLFLDKYGKICLCLDEIVWTGILENTDKDTI

Q5NA06 Coatomer subunit zeta-32.5e-0525.95Show/hide
Query:  VLIANSVGNILVERFHGVPAEERLHWRSFLVKLGADNLKGAKNEELYVASHKSVYIVYTVLGDVAVYVVGKDEYDELSLSEVIFVITSSIKDACGKVPTE
        +L+ +S G  +  +++          ++F   + A   K +   E  +    S ++VY  + D+  +V G DE +EL L+ V+   + +I          
Subjt:  VLIANSVGNILVERFHGVPAEERLHWRSFLVKLGADNLKGAKNEELYVASHKSVYIVYTVLGDVAVYVVGKDEYDELSLSEVIFVITSSIKDACGKVPTE

Query:  RLFLDKYGKICLCLDEIVWTGILENTDKDTI
        R  L+    I LCLDE+V  GI+  TD   I
Subjt:  RLFLDKYGKICLCLDEIVWTGILENTDKDTI

Arabidopsis top hitse value%identityAlignment
AT1G15370.1 SNARE-like superfamily protein4.8e-6880.14Show/hide
Query:  MLLAVLIANSVGNILVERFHGVPAEERLHWRSFLVKLGADNLKGAKNEELYVASHKSVYIVYTVLGDVAVYVVGKDEYDELSLSEVIFVITSSIKDACGK
        M+LAVL ANSVGN+L+ERF+GVPAEERLHWRSFLVKLGADNLKG KNEEL VA HKSVYIVYT+LGDV++++VGKDEYDEL+L+E I++IT+++KD CGK
Subjt:  MLLAVLIANSVGNILVERFHGVPAEERLHWRSFLVKLGADNLKGAKNEELYVASHKSVYIVYTVLGDVAVYVVGKDEYDELSLSEVIFVITSSIKDACGK

Query:  VPTERLFLDKYGKICLCLDEIVWTGILENTDKDTIKRLIRLKPPNE
         PTER+FLDKYG+ICLCLDEIVW G+LENTDKD IKRLIRLKPP+E
Subjt:  VPTERLFLDKYGKICLCLDEIVWTGILENTDKDTIKRLIRLKPPNE


Sequences Show/hide sequences
CDS sequenceShow/hide CDS sequence
ATGTTGCTCGCCGTGCTGATCGCCAACTCCGTCGGCAACATTCTCGTCGAACGGTTTCATGGAGTTCCGGCAGAGGAGCGATTGCATTGGCGATCCTTTCTAGTGAAGCT
GGGAGCGGATAATCTCAAAGGTGCCAAGAATGAAGAGCTCTATGTTGCTTCACACAAGTCGGTATACATTGTTTACACCGTGCTCGGCGATGTTGCAGTTTATGTTGTTG
GGAAGGATGAATATGATGAATTATCTTTGTCAGAAGTGATCTTTGTTATAACATCATCGATAAAGGATGCATGTGGGAAAGTTCCAACCGAGCGATTGTTTCTTGACAAA
TATGGAAAGATCTGTTTGTGTCTTGATGAAATTGTCTGGACGGGCATCTTGGAGAATACGGATAAAGACACGATCAAGAGGCTGATAAGGCTAAAGCCTCCAAATGAGTT
TTGA
mRNA sequenceShow/hide mRNA sequence
GATAATATTGTCCTCGACGTAGATACGCTATTGTAATTCTAGAACCACGTTCCACTTTCTCTTTTGCCAAACAAACTGTAATTGGTGCCTCGCAGAAAAAAGGGAAAAAG
AAAAAAAAGTTCGAGAGAAAATCTTGGATCGTTAGATTGATTCCGGGTCTTCGAATTTTCTCGGCGGCCAAACGCTCTTATCCAGTTTTTTCCCCTTCAGAAATTCCGAT
CGAACAGTTCGGAAGTTGACGGCGAAAGTTCAGGCATGTTGCTCGCCGTGCTGATCGCCAACTCCGTCGGCAACATTCTCGTCGAACGGTTTCATGGAGTTCCGGCAGAG
GAGCGATTGCATTGGCGATCCTTTCTAGTGAAGCTGGGAGCGGATAATCTCAAAGGTGCCAAGAATGAAGAGCTCTATGTTGCTTCACACAAGTCGGTATACATTGTTTA
CACCGTGCTCGGCGATGTTGCAGTTTATGTTGTTGGGAAGGATGAATATGATGAATTATCTTTGTCAGAAGTGATCTTTGTTATAACATCATCGATAAAGGATGCATGTG
GGAAAGTTCCAACCGAGCGATTGTTTCTTGACAAATATGGAAAGATCTGTTTGTGTCTTGATGAAATTGTCTGGACGGGCATCTTGGAGAATACGGATAAAGACACGATC
AAGAGGCTGATAAGGCTAAAGCCTCCAAATGAGTTTTGATTAATGAAACGGCTGCTTCTCCTCTCAGTCATCCACAATCCTATGTAATCGTCATCGATCAATAAGTTTAC
TGTACTCCTAATGTTTTTTTGGCTCCTATCATTCATTTTCGGACCTGTTCGGTTTTCGGGTTAGAACGCAAAGTTGTAAACTATTCAAGGGATTGTTTGGATTAAGATTT
TCCTGGTGGTAGGAAGTTTGAAAATACATACTACTGTGTAATTATGGAGTAAATTTGTAGTTTTATTTTTATTTTTATTTTTGAGAAACGGAGTAAATTTGTAGTTGGAG
AACTAGAGGTTAGTGGTTGAAGTATTATACTGTTCTCGACTTCTATGGTAAAAATATTGTCAGCTACAATTGGTAAATTAAAAAAAAATTATCTTAC
Protein sequenceShow/hide protein sequence
MLLAVLIANSVGNILVERFHGVPAEERLHWRSFLVKLGADNLKGAKNEELYVASHKSVYIVYTVLGDVAVYVVGKDEYDELSLSEVIFVITSSIKDACGKVPTERLFLDK
YGKICLCLDEIVWTGILENTDKDTIKRLIRLKPPNEF