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Sed0027633 (gene) of Chayote v1 genome

Gene IDSed0027633
OrganismSechium edule (Chayote v1)
DescriptionGATA transcription factor
Genome locationLG09:2160221..2161510
RNA-Seq ExpressionSed0027633
SyntenySed0027633
Gene Ontology termsGO:0006355 - regulation of transcription, DNA-templated (biological process)
GO:0008270 - zinc ion binding (molecular function)
GO:0043565 - sequence-specific DNA binding (molecular function)
InterPro domainsIPR000679 - Zinc finger, GATA-type
IPR013088 - Zinc finger, NHR/GATA-type


Homology Show/hide homology
GenBank top hitse value%identityAlignment
XP_004150081.1 GATA transcription factor 16 [Cucumis sativus]2.6e-3363.24Show/hide
Query:  PAAERSEFESAGKSLAAECERSVKICADCGTAKTPLWRGGPAGPKSLCNACGIRSRKKRKPVVGLNRGGEVERK-----SNRIIN-GGNQAKIGGNNMKM
        P  E SEF+ AGK+   E E++ K CADCGT KTPLWRGGPAGPKSLCNACGIRSRKKR+ ++GLNRGGEVERK     +NR  N GGNQ KIGG ++K 
Subjt:  PAAERSEFESAGKSLAAECERSVKICADCGTAKTPLWRGGPAGPKSLCNACGIRSRKKRKPVVGLNRGGEVERK-----SNRIIN-GGNQAKIGGNNMKM

Query:  R---------LKWRVMGEEERAATLLMALSCGSVYA
        R         ++ R +GEEE+AA LLMALS GSVYA
Subjt:  R---------LKWRVMGEEERAATLLMALSCGSVYA

XP_022138518.1 GATA transcription factor 16-like [Momordica charantia]3.3e-3662.91Show/hide
Query:  MDLVEERSEFKNAGKSPAAERSEFESAGKSLAAECERSVKICADCGTAKTPLWRGGPAGPKSLCNACGIRSRKKRKPVVGLNRGGEVERK----SNRIIN
        MD +EE SEFK+AG+SP           K+  AE E++ K CADCGT KTPLWRGGPAGPKSLCNACGIRSRKKR+ ++GLNRG EVERK    SNR  N
Subjt:  MDLVEERSEFKNAGKSPAAERSEFESAGKSLAAECERSVKICADCGTAKTPLWRGGPAGPKSLCNACGIRSRKKRKPVVGLNRGGEVERK----SNRIIN

Query:  -GGNQAKIGGNNMKMRL---------KWRVMGEEERAATLLMALSCGSVYA
         GGNQAKIGG+N+K RL         + R +GEEE+AA LLMALS GSVYA
Subjt:  -GGNQAKIGGNNMKMRL---------KWRVMGEEERAATLLMALSCGSVYA

XP_022959167.1 GATA transcription factor 16-like [Cucurbita moschata]6.8e-3460.26Show/hide
Query:  MDLVEERSEFKNAGKSPAAERSEFESAGKSLAAECERSVKICADCGTAKTPLWRGGPAGPKSLCNACGIRSRKKRKPVVGLNRGGEVERK----SNRIIN
        MDL+EE SEFK+A  SP            S  AE E++ K CADCGT KTPLWRGGPAGPKSLCNACGIRSRKKR+ ++GLNRG E ERK    SNR  N
Subjt:  MDLVEERSEFKNAGKSPAAERSEFESAGKSLAAECERSVKICADCGTAKTPLWRGGPAGPKSLCNACGIRSRKKRKPVVGLNRGGEVERK----SNRIIN

Query:  -GGNQAKIGGNNMKMR---------LKWRVMGEEERAATLLMALSCGSVYA
         GGNQAK+GG+++K R         ++ R +GEEE+AA LLMALS GSVYA
Subjt:  -GGNQAKIGGNNMKMR---------LKWRVMGEEERAATLLMALSCGSVYA

XP_023548663.1 GATA transcription factor 16-like [Cucurbita pepo subsp. pepo]4.0e-3460.93Show/hide
Query:  MDLVEERSEFKNAGKSPAAERSEFESAGKSLAAECERSVKICADCGTAKTPLWRGGPAGPKSLCNACGIRSRKKRKPVVGLNRGGEVERK----SNRIIN
        MD +EE SEFK+A  SP            S  AE E++ K CADCGT KTPLWRGGPAGPKSLCNACGIRSRKKR+ ++GLNRG EVERK    SNR  N
Subjt:  MDLVEERSEFKNAGKSPAAERSEFESAGKSLAAECERSVKICADCGTAKTPLWRGGPAGPKSLCNACGIRSRKKRKPVVGLNRGGEVERK----SNRIIN

Query:  -GGNQAKIGGNNMKMR---------LKWRVMGEEERAATLLMALSCGSVYA
         GGNQAK+GG+N+K R         ++ R +GEEE+AA LLMALS GSVYA
Subjt:  -GGNQAKIGGNNMKMR---------LKWRVMGEEERAATLLMALSCGSVYA

XP_038875288.1 GATA transcription factor 16-like [Benincasa hispida]6.8e-3465.19Show/hide
Query:  PAAERSEFESAGKSLAAECERSVKICADCGTAKTPLWRGGPAGPKSLCNACGIRSRKKRKPVVGLNRGGEVERK----SNRIIN-GGNQAKIGGNNMKMR
        P  E SEF+ AGKS  AE E++ K CADCGT KTPLWRGGPAGPKSLCNACGIRSRKKR+ ++GLNRGGEVERK    SNR  N GGNQ KIG  ++K R
Subjt:  PAAERSEFESAGKSLAAECERSVKICADCGTAKTPLWRGGPAGPKSLCNACGIRSRKKRKPVVGLNRGGEVERK----SNRIIN-GGNQAKIGGNNMKMR

Query:  ---------LKWRVMGEEERAATLLMALSCGSVYA
                 ++ R +GEEE+AA LLMALS GSVYA
Subjt:  ---------LKWRVMGEEERAATLLMALSCGSVYA

TrEMBL top hitse value%identityAlignment
A0A0A0KG76 GATA-type domain-containing protein1.3e-3363.24Show/hide
Query:  PAAERSEFESAGKSLAAECERSVKICADCGTAKTPLWRGGPAGPKSLCNACGIRSRKKRKPVVGLNRGGEVERK-----SNRIIN-GGNQAKIGGNNMKM
        P  E SEF+ AGK+   E E++ K CADCGT KTPLWRGGPAGPKSLCNACGIRSRKKR+ ++GLNRGGEVERK     +NR  N GGNQ KIGG ++K 
Subjt:  PAAERSEFESAGKSLAAECERSVKICADCGTAKTPLWRGGPAGPKSLCNACGIRSRKKRKPVVGLNRGGEVERK-----SNRIIN-GGNQAKIGGNNMKM

Query:  R---------LKWRVMGEEERAATLLMALSCGSVYA
        R         ++ R +GEEE+AA LLMALS GSVYA
Subjt:  R---------LKWRVMGEEERAATLLMALSCGSVYA

A0A1S3C8C2 GATA transcription factor 16-like isoform X16.2e-3362.5Show/hide
Query:  PAAERSEFESAGKSLAAECERSVKICADCGTAKTPLWRGGPAGPKSLCNACGIRSRKKRKPVVGLNRGGEVERK-----SNRIIN-GGNQAKIGGNNMKM
        P  E SEF+ AGK+   E E++ K CADCGT KTPLWRGGPAGPKSLCNACGIRSRKKR+ ++GLNRGGEVERK     +NR  N GGNQ KIGG ++K 
Subjt:  PAAERSEFESAGKSLAAECERSVKICADCGTAKTPLWRGGPAGPKSLCNACGIRSRKKRKPVVGLNRGGEVERK-----SNRIIN-GGNQAKIGGNNMKM

Query:  R---------LKWRVMGEEERAATLLMALSCGSVYA
        R         ++   +GEEE+AA LLMALS GSVYA
Subjt:  R---------LKWRVMGEEERAATLLMALSCGSVYA

A0A5D3BXI1 GATA transcription factor 16-like isoform X16.2e-3362.5Show/hide
Query:  PAAERSEFESAGKSLAAECERSVKICADCGTAKTPLWRGGPAGPKSLCNACGIRSRKKRKPVVGLNRGGEVERK-----SNRIIN-GGNQAKIGGNNMKM
        P  E SEF+ AGK+   E E++ K CADCGT KTPLWRGGPAGPKSLCNACGIRSRKKR+ ++GLNRGGEVERK     +NR  N GGNQ KIGG ++K 
Subjt:  PAAERSEFESAGKSLAAECERSVKICADCGTAKTPLWRGGPAGPKSLCNACGIRSRKKRKPVVGLNRGGEVERK-----SNRIIN-GGNQAKIGGNNMKM

Query:  R---------LKWRVMGEEERAATLLMALSCGSVYA
        R         ++   +GEEE+AA LLMALS GSVYA
Subjt:  R---------LKWRVMGEEERAATLLMALSCGSVYA

A0A6J1CD73 GATA transcription factor 16-like1.6e-3662.91Show/hide
Query:  MDLVEERSEFKNAGKSPAAERSEFESAGKSLAAECERSVKICADCGTAKTPLWRGGPAGPKSLCNACGIRSRKKRKPVVGLNRGGEVERK----SNRIIN
        MD +EE SEFK+AG+SP           K+  AE E++ K CADCGT KTPLWRGGPAGPKSLCNACGIRSRKKR+ ++GLNRG EVERK    SNR  N
Subjt:  MDLVEERSEFKNAGKSPAAERSEFESAGKSLAAECERSVKICADCGTAKTPLWRGGPAGPKSLCNACGIRSRKKRKPVVGLNRGGEVERK----SNRIIN

Query:  -GGNQAKIGGNNMKMRL---------KWRVMGEEERAATLLMALSCGSVYA
         GGNQAKIGG+N+K RL         + R +GEEE+AA LLMALS GSVYA
Subjt:  -GGNQAKIGGNNMKMRL---------KWRVMGEEERAATLLMALSCGSVYA

A0A6J1H3T1 GATA transcription factor 16-like3.3e-3460.26Show/hide
Query:  MDLVEERSEFKNAGKSPAAERSEFESAGKSLAAECERSVKICADCGTAKTPLWRGGPAGPKSLCNACGIRSRKKRKPVVGLNRGGEVERK----SNRIIN
        MDL+EE SEFK+A  SP            S  AE E++ K CADCGT KTPLWRGGPAGPKSLCNACGIRSRKKR+ ++GLNRG E ERK    SNR  N
Subjt:  MDLVEERSEFKNAGKSPAAERSEFESAGKSLAAECERSVKICADCGTAKTPLWRGGPAGPKSLCNACGIRSRKKRKPVVGLNRGGEVERK----SNRIIN

Query:  -GGNQAKIGGNNMKMR---------LKWRVMGEEERAATLLMALSCGSVYA
         GGNQAK+GG+++K R         ++ R +GEEE+AA LLMALS GSVYA
Subjt:  -GGNQAKIGGNNMKMR---------LKWRVMGEEERAATLLMALSCGSVYA

SwissProt top hitse value%identityAlignment
Q6YW48 Protein CYTOKININ-RESPONSIVE GATA TRANSCRIPTION FACTOR 12.0e-1263.83Show/hide
Query:  VKICADCGTAKTPLWRGGPAGPKSLCNACGIRSRKKRKPVVGLNRGG
        V++C+DC T KTPLWR GP GPKSLCNACGIR RK R+ +     GG
Subjt:  VKICADCGTAKTPLWRGGPAGPKSLCNACGIRSRKKRKPVVGLNRGG

Q8LC59 GATA transcription factor 234.8e-1445.54Show/hide
Query:  SVKICADCGTAKTPLWRGGPAGPKSLCNACGIRSRKKRK-PVVGLNRGGEVERKSNRIINGGNQAKIGGNNMKMRLKWRVMGEEERAATLLMALSCGSVY
        +++ C++C T KTP+WRGGP GPKSLCNACGIR RK+R+  ++G++     +  +++ IN  + +  GG  +K R   R + EEE+AA  L+ LSC SV 
Subjt:  SVKICADCGTAKTPLWRGGPAGPKSLCNACGIRSRKKRK-PVVGLNRGGEVERKSNRIINGGNQAKIGGNNMKMRLKWRVMGEEERAATLLMALSCGSVY

Query:  A
        A
Subjt:  A

Q8LG10 GATA transcription factor 153.5e-1747.73Show/hide
Query:  AAERSEFESAGKSLAAECERSVKICADCGTAKTPLWRGGPAGPKSLCNACGIRSRKKRKPVVGLNRGGEVERKS-NRIINGGNQAK-----IGGNNMKMR
        A E     S+ ++++ E     K CA CGT+KTPLWRGGPAGPKSLCNACGIR+RKKR+ ++  NR  + ++KS NR    G+  K     +G   M  R
Subjt:  AAERSEFESAGKSLAAECERSVKICADCGTAKTPLWRGGPAGPKSLCNACGIRSRKKRKPVVGLNRGGEVERKS-NRIINGGNQAK-----IGGNNMKMR

Query:  -----LKWRVMGEEERAATLLMALS-CGSVYA
              +   +GEEE+AA LLMALS   SVYA
Subjt:  -----LKWRVMGEEERAATLLMALS-CGSVYA

Q9FJ10 GATA transcription factor 165.8e-2052.25Show/hide
Query:  KICADCGTAKTPLWRGGPAGPKSLCNACGIRSRKKRKPVVGLNRGGEVERKSNRIINGGNQAKIGGNNMKMRL-------------KWRVMGEEERAATL
        K CADCGT+KTPLWRGGP GPKSLCNACGIR+RKKR+       G E  +K  +  +GG   K  G ++K  L             + + +GEEE+AA L
Subjt:  KICADCGTAKTPLWRGGPAGPKSLCNACGIRSRKKRKPVVGLNRGGEVERKSNRIINGGNQAKIGGNNMKMRL-------------KWRVMGEEERAATL

Query:  LMALSCGSVYA
        LMALS GSVYA
Subjt:  LMALSCGSVYA

Q9LIB5 GATA transcription factor 176.4e-1933.69Show/hide
Query:  EERSEFKNAGKSPAAERSEFESAGKSLAAECERSVKICADCGTAKTPLWRGGPAGPKSLCNACGIRSRKKRKPVVGLNRGGEVERKSNRIINGGNQAKIG
        + +++  +AG+    +     S+G    +    + + C DCGT +TPLWRGGPAGPKSLCNACGI+SRKKR+  +G+      E+K NR  N  N   + 
Subjt:  EERSEFKNAGKSPAAERSEFESAGKSLAAECERSVKICADCGTAKTPLWRGGPAGPKSLCNACGIRSRKKRKPVVGLNRGGEVERKSNRIINGGNQAKIG

Query:  GNNMK------------------------------------------------------MRLKWRVMGEEERAATLLMALSCGSVYA
          N K                                                       +  WR +GEEERAA LLMALSC SVYA
Subjt:  GNNMK------------------------------------------------------MRLKWRVMGEEERAATLLMALSCGSVYA

Arabidopsis top hitse value%identityAlignment
AT3G06740.1 GATA transcription factor 152.5e-1847.73Show/hide
Query:  AAERSEFESAGKSLAAECERSVKICADCGTAKTPLWRGGPAGPKSLCNACGIRSRKKRKPVVGLNRGGEVERKS-NRIINGGNQAK-----IGGNNMKMR
        A E     S+ ++++ E     K CA CGT+KTPLWRGGPAGPKSLCNACGIR+RKKR+ ++  NR  + ++KS NR    G+  K     +G   M  R
Subjt:  AAERSEFESAGKSLAAECERSVKICADCGTAKTPLWRGGPAGPKSLCNACGIRSRKKRKPVVGLNRGGEVERKS-NRIINGGNQAK-----IGGNNMKMR

Query:  -----LKWRVMGEEERAATLLMALS-CGSVYA
              +   +GEEE+AA LLMALS   SVYA
Subjt:  -----LKWRVMGEEERAATLLMALS-CGSVYA

AT3G16870.1 GATA transcription factor 174.6e-2033.69Show/hide
Query:  EERSEFKNAGKSPAAERSEFESAGKSLAAECERSVKICADCGTAKTPLWRGGPAGPKSLCNACGIRSRKKRKPVVGLNRGGEVERKSNRIINGGNQAKIG
        + +++  +AG+    +     S+G    +    + + C DCGT +TPLWRGGPAGPKSLCNACGI+SRKKR+  +G+      E+K NR  N  N   + 
Subjt:  EERSEFKNAGKSPAAERSEFESAGKSLAAECERSVKICADCGTAKTPLWRGGPAGPKSLCNACGIRSRKKRKPVVGLNRGGEVERKSNRIINGGNQAKIG

Query:  GNNMK------------------------------------------------------MRLKWRVMGEEERAATLLMALSCGSVYA
          N K                                                       +  WR +GEEERAA LLMALSC SVYA
Subjt:  GNNMK------------------------------------------------------MRLKWRVMGEEERAATLLMALSCGSVYA

AT4G16141.1 GATA type zinc finger transcription factor family protein4.7e-1733.85Show/hide
Query:  EFKNAGKSPAAERSEFESAGKSLAAECERSVKICADCGTAKTPLWRGGPAGPKSLCNACGIRSRKKRKPVVGLNRGG-EVERKSN---------------
        E K      A + S+ ++   S +     + K C DCGT++TPLWRGGPAGPKSLCNACGI+SRKKR+  +G+ +   +++ KSN               
Subjt:  EFKNAGKSPAAERSEFESAGKSLAAECERSVKICADCGTAKTPLWRGGPAGPKSLCNACGIRSRKKRKPVVGLNRGG-EVERKSN---------------

Query:  ---------------RIING--GN---------QAKIGGNNMKMRLK-------------------------WRVMGEEERAATLLMALSCG
                       +I  G  GN         +     NN K  +K                         WR +GEEERAA LLMALSCG
Subjt:  ---------------RIING--GN---------QAKIGGNNMKMRLK-------------------------WRVMGEEERAATLLMALSCG

AT5G26930.1 GATA transcription factor 233.4e-1545.54Show/hide
Query:  SVKICADCGTAKTPLWRGGPAGPKSLCNACGIRSRKKRK-PVVGLNRGGEVERKSNRIINGGNQAKIGGNNMKMRLKWRVMGEEERAATLLMALSCGSVY
        +++ C++C T KTP+WRGGP GPKSLCNACGIR RK+R+  ++G++     +  +++ IN  + +  GG  +K R   R + EEE+AA  L+ LSC SV 
Subjt:  SVKICADCGTAKTPLWRGGPAGPKSLCNACGIRSRKKRK-PVVGLNRGGEVERKSNRIINGGNQAKIGGNNMKMRLKWRVMGEEERAATLLMALSCGSVY

Query:  A
        A
Subjt:  A

AT5G49300.1 GATA transcription factor 164.1e-2152.25Show/hide
Query:  KICADCGTAKTPLWRGGPAGPKSLCNACGIRSRKKRKPVVGLNRGGEVERKSNRIINGGNQAKIGGNNMKMRL-------------KWRVMGEEERAATL
        K CADCGT+KTPLWRGGP GPKSLCNACGIR+RKKR+       G E  +K  +  +GG   K  G ++K  L             + + +GEEE+AA L
Subjt:  KICADCGTAKTPLWRGGPAGPKSLCNACGIRSRKKRKPVVGLNRGGEVERKSNRIINGGNQAKIGGNNMKMRL-------------KWRVMGEEERAATL

Query:  LMALSCGSVYA
        LMALS GSVYA
Subjt:  LMALSCGSVYA


Sequences Show/hide sequences
CDS sequenceShow/hide CDS sequence
ATGGATCTGGTGGAGGAAAGATCGGAGTTCAAGAACGCTGGAAAATCGCCGGCGGCGGAAAGATCGGAGTTCGAGAGCGCCGGAAAATCGTTAGCGGCGGAATGTGAGCG
AAGTGTGAAGATCTGCGCCGATTGCGGCACGGCGAAGACTCCTCTCTGGCGCGGAGGTCCAGCCGGTCCTAAGTCTCTATGCAATGCGTGTGGGATCAGAAGCAGGAAGA
AGAGGAAACCAGTGGTAGGGCTAAACAGAGGCGGAGAAGTGGAGAGAAAAAGCAACAGAATCATCAATGGCGGAAATCAGGCGAAAATCGGAGGTAATAACATGAAAATG
AGGTTAAAATGGAGAGTGATGGGAGAGGAAGAACGAGCTGCAACTTTGCTTATGGCTCTTTCTTGTGGATCTGTATATGCCTGA
mRNA sequenceShow/hide mRNA sequence
CCGCGAATTTCTGTCGGTTCGATTCTCCATCTCCATCTTCTCCTCTTTCTTCGTGCCAACAACTGATCAATCTCAATCGTGATTTCATCTTTTTCCTTTTCCAAATTCGA
TCCATCTTCTCTTCCACTGTTGCAGTAATCTCTGTTCATCGCATTTTCTGATCCACTTTTGGTAATCGATTGCCTTTGTTCATCTGATCCACTTTGATCGGTGCATTTTT
CTCCGTTTTCTTCGATTGCATGACTTCAATTCGTCTCTACCTCTTCCGATCGCCGTTCTCCACTTTCCGTTGCGAGTTCCGGTTCTTATTTTCTCGATTCCTCTCAGATC
TCTGAGATTTCTTCTAAAAAACGATGGATCTGGTGGAGGAAAGATCGGAGTTCAAGAACGCTGGAAAATCGCCGGCGGCGGAAAGATCGGAGTTCGAGAGCGCCGGAAAA
TCGTTAGCGGCGGAATGTGAGCGAAGTGTGAAGATCTGCGCCGATTGCGGCACGGCGAAGACTCCTCTCTGGCGCGGAGGTCCAGCCGGTCCTAAGTCTCTATGCAATGC
GTGTGGGATCAGAAGCAGGAAGAAGAGGAAACCAGTGGTAGGGCTAAACAGAGGCGGAGAAGTGGAGAGAAAAAGCAACAGAATCATCAATGGCGGAAATCAGGCGAAAA
TCGGAGGTAATAACATGAAAATGAGGTTAAAATGGAGAGTGATGGGAGAGGAAGAACGAGCTGCAACTTTGCTTATGGCTCTTTCTTGTGGATCTGTATATGCCTGAAAT
GATTTTTTTTTTTTTTTTTTTGAGTTTTTGAGATTTATGATTTCTACAGTCTCTAACCTGTAACTGTAATGTAAGTGTATTTGCTTTCTTCAATGGATTTTGAGTCTCTT
TTGTTCTGTAATTTTTTAGGGTTTTTTTTTCTTTTTTTTGTTGGGATGGAGAAGAAGAAGAAGATTCAATTTGTTTTTTCTTTTTTTGGGATTTGTGGGATGGGAGGTGT
TGTTTTATTGATTTTAGTTAATTACTGATGGGGA
Protein sequenceShow/hide protein sequence
MDLVEERSEFKNAGKSPAAERSEFESAGKSLAAECERSVKICADCGTAKTPLWRGGPAGPKSLCNACGIRSRKKRKPVVGLNRGGEVERKSNRIINGGNQAKIGGNNMKM
RLKWRVMGEEERAATLLMALSCGSVYA