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Sed0027639 (gene) of Chayote v1 genome

Gene IDSed0027639
OrganismSechium edule (Chayote v1)
DescriptionReverse transcriptase domain-containing protein
Genome locationLG08:26736830..26737842
RNA-Seq ExpressionSed0027639
SyntenySed0027639
Gene Ontology termsNA
InterPro domainsIPR036691 - Endonuclease/exonuclease/phosphatase superfamily


Homology Show/hide homology
GenBank top hitse value%identityAlignment
KAG0523282.1 hypothetical protein BDA96_07G110100 [Sorghum bicolor]5.9e-1938.56Show/hide
Query:  GLRGGLGLFWSDDIDLRILSSSQNHIDCDISMNNGN-WRFTGIYGFPVNHLKALTWKLLNDLS--------------LNVGLWSSEKKGGSKEISLCMEE
        G  GGL + W   +D+ + S S+NHID ++S   GN WRFTGIYG P   +K  TW+LL DL+               N  L+  EK+GG       M+ 
Subjt:  GLRGGLGLFWSDDIDLRILSSSQNHIDCDISMNNGN-WRFTGIYGFPVNHLKALTWKLLNDLS--------------LNVGLWSSEKKGGSKEISLCMEE

Query:  FREATEDIGLQDLGLVGEIFTWRNRWTNG-APIFKRLDRFLENLKSFGQMSLL
        F++A E   L DLG  G +FTWRN+ + G + I +RLDR + N +   +  L+
Subjt:  FREATEDIGLQDLGLVGEIFTWRNRWTNG-APIFKRLDRFLENLKSFGQMSLL

XP_023886153.1 uncharacterized protein LOC111998282 [Quercus suber]1.8e-2041.61Show/hide
Query:  GGLGLFWSDDIDLRILSSSQNHIDCDISM-NNGNWRFTGIYGFPVNHLKALTWKLLNDLSLNVGL-W-----------SSEKKGGSKEISLCMEEFREAT
        GGL LFW ++IDL + +SS+NHID  +     G WRFTG YG PV H +  +W LL +L+  + L W            SEK GGS      M+ FR+A 
Subjt:  GGLGLFWSDDIDLRILSSSQNHIDCDISM-NNGNWRFTGIYGFPVNHLKALTWKLLNDLSLNVGL-W-----------SSEKKGGSKEISLCMEEFREAT

Query:  EDIGLQDLGLVGEIFTWRNRWTNGAPIFKRLDRFLEN
        ++ G  DLG  G  FTW+  + +G  +++RLDR L N
Subjt:  EDIGLQDLGLVGEIFTWRNRWTNGAPIFKRLDRFLEN

XP_030924932.1 uncharacterized protein LOC115951959 [Quercus lobata]5.9e-1940.58Show/hide
Query:  GGLGLFWSDDIDLRILSSSQNHIDCDISMNNGN-WRFTGIYGFPVNHLKALTWKLLNDLS------------LNVGLWSSEKKGGSKEISLCMEEFREAT
        GGL LFW  D+DL+++SSS NHID  ++  N N WRFTG YG P   L+  +W LL DL+             N  L + EK GG       M++FRE  
Subjt:  GGLGLFWSDDIDLRILSSSQNHIDCDISMNNGN-WRFTGIYGFPVNHLKALTWKLLNDLS------------LNVGLWSSEKKGGSKEISLCMEEFREAT

Query:  EDIGLQDLGLVGEIFTWRNRWTNGAPIFKRLDRFLENL
        ++ GL DLG  G  FTW  ++ +G  +++RLDR + ++
Subjt:  EDIGLQDLGLVGEIFTWRNRWTNGAPIFKRLDRFLENL

XP_030936690.1 uncharacterized protein LOC115961942 [Quercus lobata]2.4e-2037.65Show/hide
Query:  KRKLELDEVNTVVGKRSRINEMSHLSLVVAGLRGGLGLFWSDDIDLRILSSSQNHIDCDISM-NNGNWRFTGIYGFPVNHLKALTWKLLNDLSLNVGL-W
        KR L  D ++ V     RIN             GGL LFW D +DL + +SS+NHID  +     G WR TG YG PV H +  +W LL +L+  + L W
Subjt:  KRKLELDEVNTVVGKRSRINEMSHLSLVVAGLRGGLGLFWSDDIDLRILSSSQNHIDCDISM-NNGNWRFTGIYGFPVNHLKALTWKLLNDLSLNVGL-W

Query:  -----------SSEKKGGSKEISLCMEEFREATEDIGLQDLGLVGEIFTWRNRWTNGAPIFKRLDRFLEN
                    SEK GGS      M+ FREA ++ G  DLG  G  FTW+  + +G  +++RLDR + N
Subjt:  -----------SSEKKGGSKEISLCMEEFREATEDIGLQDLGLVGEIFTWRNRWTNGAPIFKRLDRFLEN

XP_030939909.1 uncharacterized protein LOC115964800 [Quercus lobata]3.5e-1940.99Show/hide
Query:  LDEVNTVVGKRSRINEMSHLSLVVAGLRGGLGLFWSDDIDLRILSSSQNHIDCDISMNNGN-WRFTGIYGFPVNHLKALTWKLLNDLS------------
        LDEV  + G R  +    H  +      GGL LFW  D DL+++SSS NHID  I+    N WRFTG YG P   L+  +W LL DL+            
Subjt:  LDEVNTVVGKRSRINEMSHLSLVVAGLRGGLGLFWSDDIDLRILSSSQNHIDCDISMNNGN-WRFTGIYGFPVNHLKALTWKLLNDLS------------

Query:  LNVGLWSSEKKGGSKEISLCMEEFREATEDIGLQDLGLVGEIFTWRNRWTNGAPIFKRLDR
         N  L S EK GG       M +FREA ++ GL DLG VG  FTW   + +G  +++RLDR
Subjt:  LNVGLWSSEKKGGSKEISLCMEEFREATEDIGLQDLGLVGEIFTWRNRWTNGAPIFKRLDR

TrEMBL top hitse value%identityAlignment
A0A1R3GNW3 Reverse transcriptase7.1e-1836.84Show/hide
Query:  RSRINEMSHLSLVVAGLRGGLGLFWSDDIDLRILSSSQNHIDCDISMNN--GNWRFTGIYGFPVNHLKALTWKLLNDLSL------------NVGLWSSE
        R R    +   +   G  GGL +FW D +DL+++S SQ+HID  +  N     WR TG YG      + L+W LL    L            N  LW +E
Subjt:  RSRINEMSHLSLVVAGLRGGLGLFWSDDIDLRILSSSQNHIDCDISMNN--GNWRFTGIYGFPVNHLKALTWKLLNDLSL------------NVGLWSSE

Query:  KKGGSKEISLCMEEFREATEDIGLQDLGLVGEIFTWRNRWTNGAPIFKRLDR
        K GG +     M  FREA +D GL D+G  G +FTW+    N   I +RLDR
Subjt:  KKGGSKEISLCMEEFREATEDIGLQDLGLVGEIFTWRNRWTNGAPIFKRLDR

A0A2N9EH45 Reverse transcriptase domain-containing protein1.6e-1737.58Show/hide
Query:  GLRGGLGLFWSDDIDLRILSSSQNHIDCDISMNNG-NWRFTGIYGFPVNHLKALTWKLLNDLS-------LNVG----LWSSEKKGGSKEISLC-MEEFR
        G  GGL L W+D   + + + SQNHID  + ++NG  WRFTG YGFP  H K  +W L++ L        L++G    + S E++ G   +S+  + EF 
Subjt:  GLRGGLGLFWSDDIDLRILSSSQNHIDCDISMNNG-NWRFTGIYGFPVNHLKALTWKLLNDLS-------LNVG----LWSSEKKGGSKEISLC-MEEFR

Query:  EATEDIGLQDLGLVGEIFTWRNRWTNGAPIFKRLDRFLENLKSFGQMSL
        +      L DLG  G  FTW NR   GA + KRLDR + N++     +L
Subjt:  EATEDIGLQDLGLVGEIFTWRNRWTNGAPIFKRLDRFLENLKSFGQMSL

A0A7N2KQ83 Uncharacterized protein4.6e-1742.11Show/hide
Query:  GGLGLFWSDDIDLRILSSSQNHIDCDISMNNGN-WRFTGIYGFPVNHLKALTWKLLNDLS------------LNVGLWSSEKKGGSKEISLCMEEFREAT
        GGL LFW  D DL+++SSS NHID  ++    N WRFTG YG     L+  +W LL DL+             N  L S EK GG       M +F EA 
Subjt:  GGLGLFWSDDIDLRILSSSQNHIDCDISMNNGN-WRFTGIYGFPVNHLKALTWKLLNDLS------------LNVGLWSSEKKGGSKEISLCMEEFREAT

Query:  EDIGLQDLGLVGEIFTWRNRWTNGAPIFKRLDR
        ++ GL DLG VG  FTW     +G  +++RLDR
Subjt:  EDIGLQDLGLVGEIFTWRNRWTNGAPIFKRLDR

B8BD62 Uncharacterized protein4.6e-1740.43Show/hide
Query:  GLRGGLGLFWSDDIDLRILSSSQNHIDCDISMNNG-NWRFTGIYGFPVNHLKALTWKLLNDL------------SLNVGLWSSEKKGGSKEISLCMEEFR
        G  G L LFW  ++DL + S S NHID  +   +G  WR+TG+YG P    +  TW+LL  L            + N  L+S EK GGS+     M  FR
Subjt:  GLRGGLGLFWSDDIDLRILSSSQNHIDCDISMNNG-NWRFTGIYGFPVNHLKALTWKLLNDL------------SLNVGLWSSEKKGGSKEISLCMEEFR

Query:  EATEDIGLQDLGLVGEIFTWRNRWTNGAPIFK-RLDRFLEN
        +A E+  L DLG VG+ FTWRN   +     K RLDR + N
Subjt:  EATEDIGLQDLGLVGEIFTWRNRWTNGAPIFK-RLDRFLEN

F4NCI4 Reverse transcriptase domain-containing protein4.6e-1741.3Show/hide
Query:  RGGLGLFWSDDIDLRILSSSQNHIDCDISMN-NGNWRFTGIYGFPVNHLKALTWKLLNDLS------------LNVGLWSSEKKGGSKEISLCMEEFREA
        RGGL + W  +I ++++S S NHID  +     G WRFTGIYG+P    K  T  LL+ L+             N+ L +SEKKGG    S   + FR A
Subjt:  RGGLGLFWSDDIDLRILSSSQNHIDCDISMN-NGNWRFTGIYGFPVNHLKALTWKLLNDLS------------LNVGLWSSEKKGGSKEISLCMEEFREA

Query:  TEDIGLQDLGLVGEIFTWRNRWTNGAPIFKRLDRFLEN
         E+    DLG VG  FTW N     A I +RLDRF+ N
Subjt:  TEDIGLQDLGLVGEIFTWRNRWTNGAPIFKRLDRFLEN

SwissProt top hitse value%identityAlignment
No hits found
Arabidopsis top hitse value%identityAlignment
No hits found

Sequences Show/hide sequences
CDS sequenceShow/hide CDS sequence
ATGGAGGAGGTAGAAGCTGCTGGGGAAGATCTAAATGGAAATAAAATGGTAAATGATTCTGTTGATGGCAAGGAAGTTAAAGCCAGGAAGTTCAGGAGATTTAAACATCC
TGATGAAAGGGAGGGGAATAGTCATCTTGCCATGGATATTGTTAAAGGCAAAAGGAAACTTGAACTAGATGAAGTGAATACTGTGGTAGGAAAGAGGTCCCGAATCAACG
AGATGAGTCATTTGAGTTTGGTGGTGGCTGGCTTGAGGGGAGGCCTCGGTTTATTCTGGTCAGATGATATTGATTTGCGGATCCTTTCTTCCTCTCAAAATCATATTGAT
TGTGATATTTCAATGAATAATGGTAATTGGCGGTTTACTGGCATATATGGCTTCCCGGTTAATCACTTAAAGGCATTGACTTGGAAATTATTGAACGACTTGTCTTTGAA
TGTTGGGCTTTGGAGTTCTGAGAAGAAAGGTGGATCCAAAGAGATATCTCTTTGTATGGAGGAGTTTCGTGAGGCTACTGAGGATATTGGCCTTCAGGATCTAGGTTTGG
TTGGTGAAATCTTTACTTGGCGCAACAGATGGACAAACGGTGCTCCTATATTCAAACGGCTGGATAGATTTTTGGAAAATTTGAAAAGTTTTGGACAGATGAGCCTTCTT
GTATTGATTTAG
mRNA sequenceShow/hide mRNA sequence
ATGGAGGAGGTAGAAGCTGCTGGGGAAGATCTAAATGGAAATAAAATGGTAAATGATTCTGTTGATGGCAAGGAAGTTAAAGCCAGGAAGTTCAGGAGATTTAAACATCC
TGATGAAAGGGAGGGGAATAGTCATCTTGCCATGGATATTGTTAAAGGCAAAAGGAAACTTGAACTAGATGAAGTGAATACTGTGGTAGGAAAGAGGTCCCGAATCAACG
AGATGAGTCATTTGAGTTTGGTGGTGGCTGGCTTGAGGGGAGGCCTCGGTTTATTCTGGTCAGATGATATTGATTTGCGGATCCTTTCTTCCTCTCAAAATCATATTGAT
TGTGATATTTCAATGAATAATGGTAATTGGCGGTTTACTGGCATATATGGCTTCCCGGTTAATCACTTAAAGGCATTGACTTGGAAATTATTGAACGACTTGTCTTTGAA
TGTTGGGCTTTGGAGTTCTGAGAAGAAAGGTGGATCCAAAGAGATATCTCTTTGTATGGAGGAGTTTCGTGAGGCTACTGAGGATATTGGCCTTCAGGATCTAGGTTTGG
TTGGTGAAATCTTTACTTGGCGCAACAGATGGACAAACGGTGCTCCTATATTCAAACGGCTGGATAGATTTTTGGAAAATTTGAAAAGTTTTGGACAGATGAGCCTTCTT
GTATTGATTTAG
Protein sequenceShow/hide protein sequence
MEEVEAAGEDLNGNKMVNDSVDGKEVKARKFRRFKHPDEREGNSHLAMDIVKGKRKLELDEVNTVVGKRSRINEMSHLSLVVAGLRGGLGLFWSDDIDLRILSSSQNHID
CDISMNNGNWRFTGIYGFPVNHLKALTWKLLNDLSLNVGLWSSEKKGGSKEISLCMEEFREATEDIGLQDLGLVGEIFTWRNRWTNGAPIFKRLDRFLENLKSFGQMSLL
VLI