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Sed0027684 (gene) of Chayote v1 genome

Gene IDSed0027684
OrganismSechium edule (Chayote v1)
DescriptionRNase H domain-containing protein
Genome locationLG03:41092839..41093288
RNA-Seq ExpressionSed0027684
SyntenySed0027684
Gene Ontology termsGO:0003676 - nucleic acid binding (molecular function)
GO:0004523 - RNA-DNA hybrid ribonuclease activity (molecular function)
InterPro domainsIPR002156 - Ribonuclease H domain
IPR012337 - Ribonuclease H-like superfamily
IPR036397 - Ribonuclease H superfamily
IPR044730 - Ribonuclease H-like domain, plant type


Homology Show/hide homology
GenBank top hitse value%identityAlignment
XP_023879227.1 uncharacterized protein LOC111991659 [Quercus suber]7.0e-1636.92Show/hide
Query:  MGAVVRNDRGEVMAAVAKPIQQVLQVEVGEALAIRDGIQWAMELGFRRLEVETDAEIVVKKLANNVIDRSDLGAVLMDIQELATNLECCIFSWCDRRANS
        +GA++RND G VMAA+ + I     VE  E LA R  + +A ELGF  + +E D++I ++ +  +    +  G +L DI+ L++N    +F+   +R N 
Subjt:  MGAVVRNDRGEVMAAVAKPIQQVLQVEVGEALAIRDGIQWAMELGFRRLEVETDAEIVVKKLANNVIDRSDLGAVLMDIQELATNLECCIFSWCDRRANS

Query:  VAHGLTRRALEYEDFRCWIEDLPEAAYACY
        VAH L R A  +     WIED+PEA+   Y
Subjt:  VAHGLTRRALEYEDFRCWIEDLPEAAYACY

XP_023887146.1 uncharacterized protein LOC111999255 [Quercus suber]3.7e-1741.54Show/hide
Query:  MGAVVRNDRGEVMAAVAKPIQQVLQVEVGEALAIRDGIQWAMELGFRRLEVETDAEIVVKKLANNVIDRSDLGAVLMDIQELATNLECCIFSWCDRRANS
        +GA++RND G VMAA    I     VE+ E LA R  + +A ELGF  + VE D+EIV+K L+ N    S +G ++ D++ LA++L    F+   R+ N 
Subjt:  MGAVVRNDRGEVMAAVAKPIQQVLQVEVGEALAIRDGIQWAMELGFRRLEVETDAEIVVKKLANNVIDRSDLGAVLMDIQELATNLECCIFSWCDRRANS

Query:  VAHGLTRRALEYEDFRCWIEDLPEAAYACY
        VAHGL R A  +  F+ W+ED+P A    Y
Subjt:  VAHGLTRRALEYEDFRCWIEDLPEAAYACY

XP_023889222.1 LOW QUALITY PROTEIN: uncharacterized protein LOC112001275 [Quercus suber]7.0e-1641.6Show/hide
Query:  MGAVVRNDRGEVMAAVAKPIQQVLQVEVGEALAIRDGIQWAMELGFRRLEVETDAEIVVKKLANNVIDRSDLGAVLMDIQELATNLECCIFSWCDRRANS
        +GA++RND G VMAA    I     VE+ E LA R  + +A ELGF  + VE D+EIV+K L+ N    S +G ++ D++ LA++L    F+   R+ N 
Subjt:  MGAVVRNDRGEVMAAVAKPIQQVLQVEVGEALAIRDGIQWAMELGFRRLEVETDAEIVVKKLANNVIDRSDLGAVLMDIQELATNLECCIFSWCDRRANS

Query:  VAHGLTRRALEYEDFRCWIEDLPEA
        VAHGL R A  +  F+ W+E +P A
Subjt:  VAHGLTRRALEYEDFRCWIEDLPEA

XP_023918538.1 uncharacterized protein LOC112030088 [Quercus suber]5.3e-1633.58Show/hide
Query:  MGAVVRNDRGEVMAAVAKPIQQVLQVEVGEALAIRDGIQWAMELGFRRLEVETDAEIVVKKLANNVIDRSDLGAVLMDIQELATNLECCIFSWCDRRANS
        +G+++RNDRG VMA + + I     VE+ E LA R  + +A ELGF ++ +E D+EI ++ + ++    +  G ++ DI+ L+++  C IF    R+ N 
Subjt:  MGAVVRNDRGEVMAAVAKPIQQVLQVEVGEALAIRDGIQWAMELGFRRLEVETDAEIVVKKLANNVIDRSDLGAVLMDIQELATNLECCIFSWCDRRANS

Query:  VAHGLTRRALEYEDFRCWIEDLPEAAYACYERDKLSV
        VAH L R A  +  F  W+E++P +++A Y  + +++
Subjt:  VAHGLTRRALEYEDFRCWIEDLPEAAYACYERDKLSV

XP_030934661.1 uncharacterized protein LOC115960098 [Quercus lobata]3.3e-1839.23Show/hide
Query:  MGAVVRNDRGEVMAAVAKPIQQVLQVEVGEALAIRDGIQWAMELGFRRLEVETDAEIVVKKLANNVIDRSDLGAVLMDIQELATNLECCIFSWCDRRANS
        +GA++RND G VMAA  + I     VE+ E LA R  + +A +LGF ++ VE D+EI++K L++N +  S  G +L DI+ ++++L   +F+   R+ N 
Subjt:  MGAVVRNDRGEVMAAVAKPIQQVLQVEVGEALAIRDGIQWAMELGFRRLEVETDAEIVVKKLANNVIDRSDLGAVLMDIQELATNLECCIFSWCDRRANS

Query:  VAHGLTRRALEYEDFRCWIEDLPEAAYACY
        VAHGL R A  + +F+ W+ED+P      Y
Subjt:  VAHGLTRRALEYEDFRCWIEDLPEAAYACY

TrEMBL top hitse value%identityAlignment
A0A2N9FY90 RNase H domain-containing protein4.9e-1534.59Show/hide
Query:  MGAVVRNDRGEVMAAVAKPIQQVLQVEVGEALAIRDGIQWAMELGFRRLEVETDAEIVVKKLANNVIDRSDLGAVLMDIQELATNLECCIFSWCDRRANS
        +G ++RN+ G  M A+++ I       V EALA+R  +  A+E+GF+ + +E D+E+VV++ +      S  G ++ D+Q+LA  ++ C+FS   R+AN 
Subjt:  MGAVVRNDRGEVMAAVAKPIQQVLQVEVGEALAIRDGIQWAMELGFRRLEVETDAEIVVKKLANNVIDRSDLGAVLMDIQELATNLECCIFSWCDRRANS

Query:  VAHGLTRRALEYEDFRCWIEDLPEAAYACYERD
        VAH L RRA    D+  W+E +P   ++  + D
Subjt:  VAHGLTRRALEYEDFRCWIEDLPEAAYACYERD

A0A3B6MST5 RNase H domain-containing protein2.7e-1335.48Show/hide
Query:  MGAVVRNDRGEVMAAVAKPIQQVLQVEVGEALAIRDGIQWAMELGFRRLEVETDAEIVVKKLANNVIDRSDLGAVLMDIQELATNLECCIFSWCDRRANS
        +G V+RN  G V+AA  + + Q +  E+ EA+A+R  +++A E GF+ + V +D E +V K+ N  +DRS +GA+  DI+  A+    C+F+  +R  N 
Subjt:  MGAVVRNDRGEVMAAVAKPIQQVLQVEVGEALAIRDGIQWAMELGFRRLEVETDAEIVVKKLANNVIDRSDLGAVLMDIQELATNLECCIFSWCDRRANS

Query:  VAHGLTRRALEYEDFRCWIEDLPE
         AH L R + E++   CW   +P+
Subjt:  VAHGLTRRALEYEDFRCWIEDLPE

A0A3B6PTX4 RNase H domain-containing protein3.2e-1436.59Show/hide
Query:  MGAVVRNDRGEVMAAVAKPIQQVLQVEVGEALAIRDGIQWAMELGFRRLEVETDAEIVVKKLANNVIDRSDLGAVLMDIQELATNLECCIFSWCDRRANS
        +G V+RN  G V+AA  + + Q +  E+ EA+A+R  +++A E GF+ + V +D E +V K+ N  +DRS +GA+  DI+  A+N   C+F+  +R  N 
Subjt:  MGAVVRNDRGEVMAAVAKPIQQVLQVEVGEALAIRDGIQWAMELGFRRLEVETDAEIVVKKLANNVIDRSDLGAVLMDIQELATNLECCIFSWCDRRANS

Query:  VAHGLTRRALEYEDFRCWIEDLP
         AH L R + E++   CW   +P
Subjt:  VAHGLTRRALEYEDFRCWIEDLP

A0A446KQ86 RNase H domain-containing protein3.5e-1337.1Show/hide
Query:  MGAVVRNDRGEVMAAVAKPIQQVLQVEVGEALAIRDGIQWAMELGFRRLEVETDAEIVVKKLANNVIDRSDLGAVLMDIQELATNLECCIFSWCDRRANS
        +G V+RN  G V+AA    I  V   E+GEA+A+R  + +A + GF+++ VETD+  ++ K+ + + DRS  GAV+ DI+  A+    C F+   R  N 
Subjt:  MGAVVRNDRGEVMAAVAKPIQQVLQVEVGEALAIRDGIQWAMELGFRRLEVETDAEIVVKKLANNVIDRSDLGAVLMDIQELATNLECCIFSWCDRRANS

Query:  VAHGLTRRALEYEDFRCWIEDLPE
         AH L + A E+++  CW    PE
Subjt:  VAHGLTRRALEYEDFRCWIEDLPE

A0A7J9IBE0 RNase H domain-containing protein7.0e-1432.33Show/hide
Query:  GAVVRNDRGEVMAAVAKPIQQVLQVEVGEALAIRDGIQWAMELGFRRLEVETDAEIVVKKLANNVIDRSDLGAVLMDIQELATNLECCIFSWCDRRANSV
        G V+RN+ G VM +       V      EALA    I +A ++GFR++ VE D+  ++ K+   V+DRS +G  + +I+ +A N +   F   DR +N V
Subjt:  GAVVRNDRGEVMAAVAKPIQQVLQVEVGEALAIRDGIQWAMELGFRRLEVETDAEIVVKKLANNVIDRSDLGAVLMDIQELATNLECCIFSWCDRRANSV

Query:  AHGLTRRALEYEDFRCWIEDLPEAAYACYERDK
        AH + +   +  + +CW+E++P    A  E+D+
Subjt:  AHGLTRRALEYEDFRCWIEDLPEAAYACYERDK

SwissProt top hitse value%identityAlignment
No hits found
Arabidopsis top hitse value%identityAlignment
No hits found

Sequences Show/hide sequences
CDS sequenceShow/hide CDS sequence
ATGGGAGCGGTCGTTCGAAATGATCGCGGAGAAGTTATGGCTGCAGTGGCGAAGCCTATACAACAGGTGCTCCAAGTTGAAGTTGGAGAAGCTTTAGCCATTCGTGATGG
GATACAATGGGCTATGGAGCTAGGATTTCGAAGACTAGAGGTGGAAACCGATGCCGAAATTGTGGTTAAAAAACTTGCAAATAATGTAATCGACCGCTCAGACTTAGGTG
CGGTGTTGATGGATATTCAAGAACTTGCAACCAACCTTGAATGTTGCATTTTCTCTTGGTGTGATCGTCGAGCAAACTCTGTGGCACATGGCCTTACGAGAAGAGCATTG
GAGTACGAAGATTTTCGATGCTGGATTGAAGACCTTCCAGAAGCTGCTTATGCTTGTTACGAAAGAGACAAACTCTCGGTGGCTATTCAACAGCCACTAATTTCAACTTT
ATCTAATTAG
mRNA sequenceShow/hide mRNA sequence
ATGGGAGCGGTCGTTCGAAATGATCGCGGAGAAGTTATGGCTGCAGTGGCGAAGCCTATACAACAGGTGCTCCAAGTTGAAGTTGGAGAAGCTTTAGCCATTCGTGATGG
GATACAATGGGCTATGGAGCTAGGATTTCGAAGACTAGAGGTGGAAACCGATGCCGAAATTGTGGTTAAAAAACTTGCAAATAATGTAATCGACCGCTCAGACTTAGGTG
CGGTGTTGATGGATATTCAAGAACTTGCAACCAACCTTGAATGTTGCATTTTCTCTTGGTGTGATCGTCGAGCAAACTCTGTGGCACATGGCCTTACGAGAAGAGCATTG
GAGTACGAAGATTTTCGATGCTGGATTGAAGACCTTCCAGAAGCTGCTTATGCTTGTTACGAAAGAGACAAACTCTCGGTGGCTATTCAACAGCCACTAATTTCAACTTT
ATCTAATTAG
Protein sequenceShow/hide protein sequence
MGAVVRNDRGEVMAAVAKPIQQVLQVEVGEALAIRDGIQWAMELGFRRLEVETDAEIVVKKLANNVIDRSDLGAVLMDIQELATNLECCIFSWCDRRANSVAHGLTRRAL
EYEDFRCWIEDLPEAAYACYERDKLSVAIQQPLISTLSN