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Sed0027749 (gene) of Chayote v1 genome

Gene IDSed0027749
OrganismSechium edule (Chayote v1)
DescriptionTumor necrosis factor receptor family protein
Genome locationLG05:4638806..4642888
RNA-Seq ExpressionSed0027749
SyntenySed0027749
Gene Ontology termsGO:0016020 - membrane (cellular component)
InterPro domainsNA


Homology Show/hide homology
GenBank top hitse value%identityAlignment
KAG7035535.1 hypothetical protein SDJN02_02332 [Cucurbita argyrosperma subsp. argyrosperma]8.8e-6279.22Show/hide
Query:  WLRSFQRIGNADGGGGSAAGLVFNTFARYFSRKRAENVRKINPRLTPQAASLVAQDIYGLVKEHGPLTISNAWIKTQESGVSGLSSKTHMKLLLKWMRGR
        WLR  Q I NADGGGGS AGLVF+TFARYFSR RAEN+RKINP+LTPQ ASLVAQD+YG+VK+HGPLT+SNAWIK QESGV GL+SKTHMKLLLKWMRGR
Subjt:  WLRSFQRIGNADGGGGSAAGLVFNTFARYFSRKRAENVRKINPRLTPQAASLVAQDIYGLVKEHGPLTISNAWIKTQESGVSGLSSKTHMKLLLKWMRGR

Query:  KMLKLFCNQIGSNKKFFISTPDDPRADELKNASEPAVQRQKKKKAQIRKKKPSK
        KML+LFCNQ+GSNKKF ++TP+DPR +ELK+ASEP VQR+KK+KAQIR++K SK
Subjt:  KMLKLFCNQIGSNKKFFISTPDDPRADELKNASEPAVQRQKKKKAQIRKKKPSK

XP_022958708.1 uncharacterized protein LOC111459852 [Cucurbita moschata]2.3e-6279.87Show/hide
Query:  WLRSFQRIGNADGGGGSAAGLVFNTFARYFSRKRAENVRKINPRLTPQAASLVAQDIYGLVKEHGPLTISNAWIKTQESGVSGLSSKTHMKLLLKWMRGR
        WLR  Q I NADGGGGS AGLVF+TF RYFSR RAEN+RKINP+LTPQ ASLVAQD+YG+VK+HGPLT+SNAWIK QESGV GL+SKTHMKLLLKWMRGR
Subjt:  WLRSFQRIGNADGGGGSAAGLVFNTFARYFSRKRAENVRKINPRLTPQAASLVAQDIYGLVKEHGPLTISNAWIKTQESGVSGLSSKTHMKLLLKWMRGR

Query:  KMLKLFCNQIGSNKKFFISTPDDPRADELKNASEPAVQRQKKKKAQIRKKKPSK
        KML+LFCNQ+GSNKKF ++TPDDPRA+ELK+ASEP VQR+KK+KAQIR++K SK
Subjt:  KMLKLFCNQIGSNKKFFISTPDDPRADELKNASEPAVQRQKKKKAQIRKKKPSK

XP_022996189.1 uncharacterized protein LOC111491495 [Cucurbita maxima]4.0e-6279.87Show/hide
Query:  WLRSFQRIGNADGGGGSAAGLVFNTFARYFSRKRAENVRKINPRLTPQAASLVAQDIYGLVKEHGPLTISNAWIKTQESGVSGLSSKTHMKLLLKWMRGR
        WLR  Q I NADGGGGS AGLVF+TFARYFSR RAEN+RKINP+LTPQ ASLVAQD+YG+VK+HGPLT+SNAWIK QESGV GL+SKTHMKLLLKWMRGR
Subjt:  WLRSFQRIGNADGGGGSAAGLVFNTFARYFSRKRAENVRKINPRLTPQAASLVAQDIYGLVKEHGPLTISNAWIKTQESGVSGLSSKTHMKLLLKWMRGR

Query:  KMLKLFCNQIGSNKKFFISTPDDPRADELKNASEPAVQRQKKKKAQIRKKKPSK
        KML+LFCNQ+GSNKKF ++TP+DPRA+ELK+ASEP VQR+KK+KA+IR+KK SK
Subjt:  KMLKLFCNQIGSNKKFFISTPDDPRADELKNASEPAVQRQKKKKAQIRKKKPSK

XP_023534502.1 uncharacterized protein LOC111796041 [Cucurbita pepo subsp. pepo]6.7e-6278.71Show/hide
Query:  WLRSFQRIGNAD-GGGGSAAGLVFNTFARYFSRKRAENVRKINPRLTPQAASLVAQDIYGLVKEHGPLTISNAWIKTQESGVSGLSSKTHMKLLLKWMRG
        WLR  Q I NAD GGGG +AGLVF+TFARYFSR RAEN+RKINP+LTP  ASLVAQD+YG+VK+HGPLT+SNAWIK QESGV GL+SKTHMKLLLKWMRG
Subjt:  WLRSFQRIGNAD-GGGGSAAGLVFNTFARYFSRKRAENVRKINPRLTPQAASLVAQDIYGLVKEHGPLTISNAWIKTQESGVSGLSSKTHMKLLLKWMRG

Query:  RKMLKLFCNQIGSNKKFFISTPDDPRADELKNASEPAVQRQKKKKAQIRKKKPSK
        RKML+LFCNQ+GSNKKF ++TPDDPRA+ELK+ASEP VQR+KK+KAQIR++K SK
Subjt:  RKMLKLFCNQIGSNKKFFISTPDDPRADELKNASEPAVQRQKKKKAQIRKKKPSK

XP_038876162.1 uncharacterized protein LOC120068455 [Benincasa hispida]4.0e-6278.06Show/hide
Query:  MWLRSFQRIGNADGGGGSAAGLVFNTFARYFSRKRAENVRKINPRLTPQAASLVAQDIYGLVKEHGPLTISNAWIKTQESGVSGLSSKTHMKLLLKWMRG
        MWLRS QRIGNADGGGGS AGLVF+TFARYFSRKRAEN+RKINP+LTPQ ASLVAQD+YG+VK+HGPLT+SNAWIK QESGV+GL+SKTHMKLLLKWMRG
Subjt:  MWLRSFQRIGNADGGGGSAAGLVFNTFARYFSRKRAENVRKINPRLTPQAASLVAQDIYGLVKEHGPLTISNAWIKTQESGVSGLSSKTHMKLLLKWMRG

Query:  RKMLKLFCNQIGSNKKFFISTPDDPRADELKNASEPAVQRQKKKKAQIRKKKPSK
        RKML LFCNQ+GSNKKF + TPDDPRA++LK++SE  VQR+K+ K+ ++++K SK
Subjt:  RKMLKLFCNQIGSNKKFFISTPDDPRADELKNASEPAVQRQKKKKAQIRKKKPSK

TrEMBL top hitse value%identityAlignment
A0A0A0KK52 Uncharacterized protein2.0e-5976.13Show/hide
Query:  MWLRSFQRIGNADGGGGSAAGLVFNTFARYFSRKRAENVRKINPRLTPQAASLVAQDIYGLVKEHGPLTISNAWIKTQESGVSGLSSKTHMKLLLKWMRG
        MW RS QRIGNADGGGG  AGLVFNTFAR+FSRKRAEN+RKINP+LTPQ ASLVAQD+YG+V++HGPLTISNAWIK QESGV+GL+SKTHMKLLLKWMRG
Subjt:  MWLRSFQRIGNADGGGGSAAGLVFNTFARYFSRKRAENVRKINPRLTPQAASLVAQDIYGLVKEHGPLTISNAWIKTQESGVSGLSSKTHMKLLLKWMRG

Query:  RKMLKLFCNQIGSNKKFFISTPDDPRADELKNASEPAVQRQKKKKAQIRKKKPSK
        RKML LFC+ +GSNKKF + TPDDPRA+ELKN+SE   QR+K+ K+  +++K SK
Subjt:  RKMLKLFCNQIGSNKKFFISTPDDPRADELKNASEPAVQRQKKKKAQIRKKKPSK

A0A1S3ATS9 uncharacterized protein LOC1034828881.4e-5772.9Show/hide
Query:  MWLRSFQRIGNADGGGGSAAGLVFNTFARYFSRKRAENVRKINPRLTPQAASLVAQDIYGLVKEHGPLTISNAWIKTQESGVSGLSSKTHMKLLLKWMRG
        MW RS QRIGN DGGGG   GLVFNTFAR+FSRKRAEN+RKINP+LTPQ ASLVAQD+YG++++HGPLT+SNAWIK QESGV+GL+SKTHMKLLLKWMRG
Subjt:  MWLRSFQRIGNADGGGGSAAGLVFNTFARYFSRKRAENVRKINPRLTPQAASLVAQDIYGLVKEHGPLTISNAWIKTQESGVSGLSSKTHMKLLLKWMRG

Query:  RKMLKLFCNQIGSNKKFFISTPDDPRADELKNASEPAVQRQKKKKAQIRKKKPSK
        R+ML LFC+ +GSNKKF + TPDDPRA+ELKN SE   QR+K+ K+  +++K SK
Subjt:  RKMLKLFCNQIGSNKKFFISTPDDPRADELKNASEPAVQRQKKKKAQIRKKKPSK

A0A6J1E538 uncharacterized protein LOC1110261271.1e-6078.21Show/hide
Query:  MWLRSFQRIGNADGGGGSAAGLVFNTFARYFSRKRAENVRKINPRLTPQAASLVAQDIYGLVKEHGPLTISNAWIKTQESGVSGLSSKTHMKLLLKWMRG
        MWLR FQRIG+ADGGGGS AGLVF+TFARYFSRKRAEN+RKINP+LTPQ ASLVAQD+YG+VK+HGPL+ISNAWIK QE GVSGL+SKTHMKL+LKWMRG
Subjt:  MWLRSFQRIGNADGGGGSAAGLVFNTFARYFSRKRAENVRKINPRLTPQAASLVAQDIYGLVKEHGPLTISNAWIKTQESGVSGLSSKTHMKLLLKWMRG

Query:  RKMLKLFCNQIGSNKKFFIST-PDDPRADELKNASEPAVQRQKKKKAQIRKKKPSK
        RKMLKL CNQ+GSNKKF +ST PDDP+AD+LK++SE  VQR+K+ K   R++KPSK
Subjt:  RKMLKLFCNQIGSNKKFFIST-PDDPRADELKNASEPAVQRQKKKKAQIRKKKPSK

A0A6J1H3U5 uncharacterized protein LOC1114598521.1e-6279.87Show/hide
Query:  WLRSFQRIGNADGGGGSAAGLVFNTFARYFSRKRAENVRKINPRLTPQAASLVAQDIYGLVKEHGPLTISNAWIKTQESGVSGLSSKTHMKLLLKWMRGR
        WLR  Q I NADGGGGS AGLVF+TF RYFSR RAEN+RKINP+LTPQ ASLVAQD+YG+VK+HGPLT+SNAWIK QESGV GL+SKTHMKLLLKWMRGR
Subjt:  WLRSFQRIGNADGGGGSAAGLVFNTFARYFSRKRAENVRKINPRLTPQAASLVAQDIYGLVKEHGPLTISNAWIKTQESGVSGLSSKTHMKLLLKWMRGR

Query:  KMLKLFCNQIGSNKKFFISTPDDPRADELKNASEPAVQRQKKKKAQIRKKKPSK
        KML+LFCNQ+GSNKKF ++TPDDPRA+ELK+ASEP VQR+KK+KAQIR++K SK
Subjt:  KMLKLFCNQIGSNKKFFISTPDDPRADELKNASEPAVQRQKKKKAQIRKKKPSK

A0A6J1K817 uncharacterized protein LOC1114914951.9e-6279.87Show/hide
Query:  WLRSFQRIGNADGGGGSAAGLVFNTFARYFSRKRAENVRKINPRLTPQAASLVAQDIYGLVKEHGPLTISNAWIKTQESGVSGLSSKTHMKLLLKWMRGR
        WLR  Q I NADGGGGS AGLVF+TFARYFSR RAEN+RKINP+LTPQ ASLVAQD+YG+VK+HGPLT+SNAWIK QESGV GL+SKTHMKLLLKWMRGR
Subjt:  WLRSFQRIGNADGGGGSAAGLVFNTFARYFSRKRAENVRKINPRLTPQAASLVAQDIYGLVKEHGPLTISNAWIKTQESGVSGLSSKTHMKLLLKWMRGR

Query:  KMLKLFCNQIGSNKKFFISTPDDPRADELKNASEPAVQRQKKKKAQIRKKKPSK
        KML+LFCNQ+GSNKKF ++TP+DPRA+ELK+ASEP VQR+KK+KA+IR+KK SK
Subjt:  KMLKLFCNQIGSNKKFFISTPDDPRADELKNASEPAVQRQKKKKAQIRKKKPSK

SwissProt top hitse value%identityAlignment
No hits found
Arabidopsis top hitse value%identityAlignment
AT1G73940.1 unknown protein2.3e-3150.64Show/hide
Query:  ADGGGG----SAAGLVFNT-------FARYFSRKRAENVRKINPRLTPQAASLVAQDIYGLVKEHGPLTISNAWIKTQESGVSGLSSKTHMKLLLKWMRG
        A GGGG      A  +F+          RY SR+RA NVRKINP++  Q A  ++  +Y L K HGPL++ N W++ QE+GVSGL+SKTHMKLLLKWMRG
Subjt:  ADGGGG----SAAGLVFNT-------FARYFSRKRAENVRKINPRLTPQAASLVAQDIYGLVKEHGPLTISNAWIKTQESGVSGLSSKTHMKLLLKWMRG

Query:  RKMLKLFCNQIGSNKKFFIST-PDDPRADELKNASEPAVQRQKKKKAQIRKKKPSK
        +KMLKL CNQ+GS+KKFF +  P+DP  +      +PA   + KK+A   KKK SK
Subjt:  RKMLKLFCNQIGSNKKFFIST-PDDPRADELKNASEPAVQRQKKKKAQIRKKKPSK

AT5G49410.1 unknown protein1.3e-1838.38Show/hide
Query:  VFNTFARYFSRKRAENVRKINPRLTPQAASLVAQDIYGLVKEHGPLTISNAWIKTQESGVSGLSSKTHMKLLLKWMRGRKMLKLFCNQIGSNKKFFIST
        V     R+F+ K    ++ I     P+    + + I+ ++K+HGPLTI+  W + +E G+ GL+SK HMK++L+WMR R+ LKL CN +G +K+F  +T
Subjt:  VFNTFARYFSRKRAENVRKINPRLTPQAASLVAQDIYGLVKEHGPLTISNAWIKTQESGVSGLSSKTHMKLLLKWMRGRKMLKLFCNQIGSNKKFFIST

AT5G49410.2 unknown protein1.3e-1838.38Show/hide
Query:  VFNTFARYFSRKRAENVRKINPRLTPQAASLVAQDIYGLVKEHGPLTISNAWIKTQESGVSGLSSKTHMKLLLKWMRGRKMLKLFCNQIGSNKKFFIST
        V     R+F+ K    ++ I     P+    + + I+ ++K+HGPLTI+  W + +E G+ GL+SK HMK++L+WMR R+ LKL CN +G +K+F  +T
Subjt:  VFNTFARYFSRKRAENVRKINPRLTPQAASLVAQDIYGLVKEHGPLTISNAWIKTQESGVSGLSSKTHMKLLLKWMRGRKMLKLFCNQIGSNKKFFIST


Sequences Show/hide sequences
CDS sequenceShow/hide CDS sequence
ATGTGGCTTCGCAGTTTCCAAAGAATCGGAAATGCAGACGGAGGTGGAGGCTCAGCTGCTGGACTCGTTTTCAACACATTCGCGAGGTATTTCTCGAGGAAGCGAGCTGA
GAATGTTCGGAAGATCAATCCCAGATTGACCCCTCAAGCAGCTTCCTTGGTTGCTCAAGATATCTATGGCCTCGTCAAGGAACATGGGCCTCTCACCATTTCCAATGCTT
GGATTAAAACCCAGGAATCTGGTGTGAGTGGATTGAGCAGCAAAACACACATGAAGCTATTGCTGAAATGGATGAGGGGAAGGAAGATGCTGAAGCTTTTCTGCAACCAA
ATTGGTTCCAACAAGAAATTTTTTATTTCTACTCCGGACGATCCTCGGGCAGACGAGTTGAAGAATGCTTCGGAACCAGCCGTCCAGAGACAGAAGAAAAAGAAGGCACA
AATAAGGAAAAAAAAGCCATCCAAAAAATAG
mRNA sequenceShow/hide mRNA sequence
TTCAGATCCAGCCCTAAACCAACCGAACTGGTTGCGGCTCCATTTTCAATCTCAGTCTTGGCGGCACAAGTGCGATCACCGCGCAGTAGCGATCAATACCGCAGAGTTTG
ATTCGATTCGATATGTGGCTTCGCAGTTTCCAAAGAATCGGAAATGCAGACGGAGGTGGAGGCTCAGCTGCTGGACTCGTTTTCAACACATTCGCGAGGTATTTCTCGAG
GAAGCGAGCTGAGAATGTTCGGAAGATCAATCCCAGATTGACCCCTCAAGCAGCTTCCTTGGTTGCTCAAGATATCTATGGCCTCGTCAAGGAACATGGGCCTCTCACCA
TTTCCAATGCTTGGATTAAAACCCAGGAATCTGGTGTGAGTGGATTGAGCAGCAAAACACACATGAAGCTATTGCTGAAATGGATGAGGGGAAGGAAGATGCTGAAGCTT
TTCTGCAACCAAATTGGTTCCAACAAGAAATTTTTTATTTCTACTCCGGACGATCCTCGGGCAGACGAGTTGAAGAATGCTTCGGAACCAGCCGTCCAGAGACAGAAGAA
AAAGAAGGCACAAATAAGGAAAAAAAAGCCATCCAAAAAATAGATCTTTGCTGACTTCTGTTAGTTGATCATGCAGTTTGTGGGCTATCCTCTGGTTTGTTTGTACTGAT
GCAGGCTCACGATCACGGCGTATGATGAATTTGTGAGTTTCTGCAATCTCTATTTTTGCCCAAATTTCAACTATATTTGGTTACATGCAAGTTTTTTTTTGTTGATGAAT
ATTTCACATTGACTTATTTCCATGCATTGACTGATAAACCATGCGTTTTAAATCCATGGTTGATAAGCATGGATTAGGATGTCCCAGTGGAACAAGGAAAAAGAGGCAAG
ATCTTGAGAAATATACGAAAATAGTCTAGC
Protein sequenceShow/hide protein sequence
MWLRSFQRIGNADGGGGSAAGLVFNTFARYFSRKRAENVRKINPRLTPQAASLVAQDIYGLVKEHGPLTISNAWIKTQESGVSGLSSKTHMKLLLKWMRGRKMLKLFCNQ
IGSNKKFFISTPDDPRADELKNASEPAVQRQKKKKAQIRKKKPSKK