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Sed0027801 (gene) of Chayote v1 genome

Gene IDSed0027801
OrganismSechium edule (Chayote v1)
Descriptionleucine-rich repeat extensin-like protein 3
Genome locationLG06:46196310..46196956
RNA-Seq ExpressionSed0027801
SyntenySed0027801
Gene Ontology termsNA
InterPro domainsNA


Homology Show/hide homology
GenBank top hitse value%identityAlignment
XP_008463997.1 PREDICTED: leucine-rich repeat extensin-like protein 3 [Cucumis melo]4.6e-1850.66Show/hide
Query:  MKRPLSTLILVISWFAFSIFWILVDSKTPHGASPS-----PSPHYRSPRSSPRPQPPPSPPPAPPLVV-----WPRPPRLSPTQRPRGH-----PPPPL-
        M+RPL+TLI VIS FAFS+  +LV+S+TP  A+P+     PSP   SP   P P PPP PPP PP  +      P PP  SP+  P  H     PPPPL 
Subjt:  MKRPLSTLILVISWFAFSIFWILVDSKTPHGASPS-----PSPHYRSPRSSPRPQPPPSPPPAPPLVV-----WPRPPRLSPTQRPRGH-----PPPPL-

Query:  ----------PEPRTNIKNKQVSKIGLNMGETVGLFFVGIAAFLQICVVGFL
                  P P  NI   Q SK  LN G+ VGLFFVGIAA LQICVVGFL
Subjt:  ----------PEPRTNIKNKQVSKIGLNMGETVGLFFVGIAAFLQICVVGFL

XP_011651738.2 LOW QUALITY PROTEIN: basic proline-rich protein [Cucumis sativus]3.5e-1850Show/hide
Query:  MKRPLSTLILVISWFAFSIFWILVDSKTPHGASPS-----PSPHYRSPRSSPRPQPPPSPPPAPPLVVWPRPPRLS----------PTQRPRGHPPPPL-
        M+RPL+TLI VI+ FAFS+  +LV+S+TP GA+P+     PS    SP   P P PPP PPP PP  + P PP  S          P  R R +PPPPL 
Subjt:  MKRPLSTLILVISWFAFSIFWILVDSKTPHGASPS-----PSPHYRSPRSSPRPQPPPSPPPAPPLVVWPRPPRLS----------PTQRPRGHPPPPL-

Query:  ----------PEPRTNIKNKQVSKIGLNMGETVGLFFVGIAAFLQICVVGFL
                  P P  NI   Q SK  LN G+ VGLFFVGIAA LQICVVGFL
Subjt:  ----------PEPRTNIKNKQVSKIGLNMGETVGLFFVGIAAFLQICVVGFL

XP_022948467.1 leucine-rich repeat extensin-like protein 3 [Cucurbita moschata]6.8e-1444.31Show/hide
Query:  MKRPLSTLILVISWFAFSIFWILVDSKTPHGASPSPS-PHYRSPRSSPRPQPPPSPPPAPPL----------------------------VVWPRPPRLS
        M+RP STLI VIS FAFSI  +LV+S+   GA PS S P    P S P P PPP PPP PPL                             ++P PP L 
Subjt:  MKRPLSTLILVISWFAFSIFWILVDSKTPHGASPSPS-PHYRSPRSSPRPQPPPSPPPAPPL----------------------------VVWPRPPRLS

Query:  PTQRPRGHPPPPLP------------EPRTNIKNKQVSKIGLNMGETVGLFFVGIAAFLQICVVGFL
          Q     PPPP+P                N  N + SK  LNMG+ VGLFFVGIAA LQICVVGFL
Subjt:  PTQRPRGHPPPPLP------------EPRTNIKNKQVSKIGLNMGETVGLFFVGIAAFLQICVVGFL

XP_023523257.1 leucine-rich repeat extensin-like protein 3 [Cucurbita pepo subsp. pepo]4.9e-1243.6Show/hide
Query:  MKRPLSTLILVISWFAFSIFWILVDSKTPHGA----SPSPSPHYRSPRSSPRPQPPPSP---------------PPAPPLVVWPRPPRLS----------
        M+RP STLI VIS FAFSI  +LV+S+   GA    SP P P    P S P P PPP P               PP PP  V P PP  S          
Subjt:  MKRPLSTLILVISWFAFSIFWILVDSKTPHGA----SPSPSPHYRSPRSSPRPQPPPSP---------------PPAPPLVVWPRPPRLS----------

Query:  ---PTQRPRGHPPPPLPEPRTNIKNK--------------QVSKIGLNMGETVGLFFVGIAAFLQICVVGFL
           P+ + R  PPP  P P ++  NK              + SK  LNMG+ VGLFFVGIAA LQICVVGFL
Subjt:  ---PTQRPRGHPPPPLPEPRTNIKNK--------------QVSKIGLNMGETVGLFFVGIAAFLQICVVGFL

XP_038900729.1 proline-rich receptor-like protein kinase PERK2 [Benincasa hispida]1.9e-1649.68Show/hide
Query:  MKRPLSTLILVISWFAFSIFWILVDSKTPHGASPS-----PSPHYRSPRSSP---RPQPPPSPPPAPPLVVWPRPPRLSPTQRPRGHPPP---PLPE---
        M+RPL+TLI VIS FAFS+  +LV+S+T  GA+P+     PSP   SP   P    P PPP PPP PP ++ P PP LSP+  P   PPP   PLP    
Subjt:  MKRPLSTLILVISWFAFSIFWILVDSKTPHGASPS-----PSPHYRSPRSSP---RPQPPPSPPPAPPLVVWPRPPRLSPTQRPRGHPPP---PLPE---

Query:  ----------------PRTNIKN-KQVSKIGLNMGETVGLFFVGIAAFLQICVVGFL
                        P  NI N  Q SK  LN G+ VGLFFVGIAA LQICVVGFL
Subjt:  ----------------PRTNIKN-KQVSKIGLNMGETVGLFFVGIAAFLQICVVGFL

TrEMBL top hitse value%identityAlignment
A0A0A0LC75 Uncharacterized protein1.7e-1850Show/hide
Query:  MKRPLSTLILVISWFAFSIFWILVDSKTPHGASPS-----PSPHYRSPRSSPRPQPPPSPPPAPPLVVWPRPPRLS----------PTQRPRGHPPPPL-
        M+RPL+TLI VI+ FAFS+  +LV+S+TP GA+P+     PS    SP   P P PPP PPP PP  + P PP  S          P  R R +PPPPL 
Subjt:  MKRPLSTLILVISWFAFSIFWILVDSKTPHGASPS-----PSPHYRSPRSSPRPQPPPSPPPAPPLVVWPRPPRLS----------PTQRPRGHPPPPL-

Query:  ----------PEPRTNIKNKQVSKIGLNMGETVGLFFVGIAAFLQICVVGFL
                  P P  NI   Q SK  LN G+ VGLFFVGIAA LQICVVGFL
Subjt:  ----------PEPRTNIKNKQVSKIGLNMGETVGLFFVGIAAFLQICVVGFL

A0A1S3CKG6 leucine-rich repeat extensin-like protein 32.2e-1850.66Show/hide
Query:  MKRPLSTLILVISWFAFSIFWILVDSKTPHGASPS-----PSPHYRSPRSSPRPQPPPSPPPAPPLVV-----WPRPPRLSPTQRPRGH-----PPPPL-
        M+RPL+TLI VIS FAFS+  +LV+S+TP  A+P+     PSP   SP   P P PPP PPP PP  +      P PP  SP+  P  H     PPPPL 
Subjt:  MKRPLSTLILVISWFAFSIFWILVDSKTPHGASPS-----PSPHYRSPRSSPRPQPPPSPPPAPPLVV-----WPRPPRLSPTQRPRGH-----PPPPL-

Query:  ----------PEPRTNIKNKQVSKIGLNMGETVGLFFVGIAAFLQICVVGFL
                  P P  NI   Q SK  LN G+ VGLFFVGIAA LQICVVGFL
Subjt:  ----------PEPRTNIKNKQVSKIGLNMGETVGLFFVGIAAFLQICVVGFL

A0A6J1DGD7 proline-rich receptor-like protein kinase PERK97.1e-0943.92Show/hide
Query:  MKRPLSTLILVISWFAFSIFWILVDSK------TPHGASPS--PSPHYRSPRSSPRPQPPPSPPPAPPLVVWPRPPRLSPTQRPRGHPPPPL--------
        M+RPL+T I VIS FAFSI  +LV+ +      +P   SP   PSP  RSP S P P PP  P P+P     P P    P +R R   PPP         
Subjt:  MKRPLSTLILVISWFAFSIFWILVDSK------TPHGASPS--PSPHYRSPRSSPRPQPPPSPPPAPPLVVWPRPPRLSPTQRPRGHPPPPL--------

Query:  ------PEPRTNIKNKQVSKIGLNMGETVGLFFVGIAAFLQICVVGFL
                 + N KN+   +  LN G+ VGLFFVGIAA LQ+CVVGFL
Subjt:  ------PEPRTNIKNKQVSKIGLNMGETVGLFFVGIAAFLQICVVGFL

A0A6J1G9A4 leucine-rich repeat extensin-like protein 33.3e-1444.31Show/hide
Query:  MKRPLSTLILVISWFAFSIFWILVDSKTPHGASPSPS-PHYRSPRSSPRPQPPPSPPPAPPL----------------------------VVWPRPPRLS
        M+RP STLI VIS FAFSI  +LV+S+   GA PS S P    P S P P PPP PPP PPL                             ++P PP L 
Subjt:  MKRPLSTLILVISWFAFSIFWILVDSKTPHGASPSPS-PHYRSPRSSPRPQPPPSPPPAPPL----------------------------VVWPRPPRLS

Query:  PTQRPRGHPPPPLP------------EPRTNIKNKQVSKIGLNMGETVGLFFVGIAAFLQICVVGFL
          Q     PPPP+P                N  N + SK  LNMG+ VGLFFVGIAA LQICVVGFL
Subjt:  PTQRPRGHPPPPLP------------EPRTNIKNKQVSKIGLNMGETVGLFFVGIAAFLQICVVGFL

A0A6J1KAI1 leucine-rich repeat extensin-like protein 34.0e-1241.53Show/hide
Query:  MKRPLSTLILVISWFAFSIFWILVDSKTPHGA----SPSPSPHYRSPRSSPRPQPPPSPPPAPPL--------------------------VVWPRPPRL
        M+RPLST I VIS FAFSI  +LV+S+   GA    SP P P    P S P P PP SPP +PPL                          +  P PP  
Subjt:  MKRPLSTLILVISWFAFSIFWILVDSKTPHGA----SPSPSPHYRSPRSSPRPQPPPSPPPAPPL--------------------------VVWPRPPRL

Query:  SPTQRPRGHPPP-----------PLPEP----------------RTNIKNKQVSKIGLNMGETVGLFFVGIAAFLQICVVGFL
        SP+  P   PPP           PLP P                  N  N + SK  LNMG+ VGLFFVGIAA LQICVVGFL
Subjt:  SPTQRPRGHPPP-----------PLPEP----------------RTNIKNKQVSKIGLNMGETVGLFFVGIAAFLQICVVGFL

SwissProt top hitse value%identityAlignment
No hits found
Arabidopsis top hitse value%identityAlignment
AT1G54215.1 proline-rich family protein8.6e-0735.62Show/hide
Query:  STLILVISWFAFSIFWILVDSKTPHGASPSPSPHYRSPRSSPRPQPPPSPPPAPPLV-------VWPRPPRLSPTQRPRGHPPPPLPEPRTNIKNKQVSK
        S  + +++ F     ++LV S+ P     SP P    P   P P PPP PPP PP V       + P PP ++   +P   PPPP P PR+    K   K
Subjt:  STLILVISWFAFSIFWILVDSKTPHGASPSPSPHYRSPRSSPRPQPPPSPPPAPPLV-------VWPRPPRLSPTQRPRGHPPPPLPEPRTNIKNKQVSK

Query:  ------------------IGLNMGETVGLFFVGIAAFLQICVVGFL
                           GLN G+TVGL FVG+ A LQ+ VV FL
Subjt:  ------------------IGLNMGETVGLFFVGIAAFLQICVVGFL


Sequences Show/hide sequences
CDS sequenceShow/hide CDS sequence
ATGAAACGGCCATTGTCTACATTGATCTTAGTGATTTCCTGGTTTGCTTTCAGTATTTTTTGGATTCTTGTTGATTCCAAGACTCCTCATGGAGCTAGTCCTTCTCCCTC
GCCACATTATAGGTCGCCGCGTTCGTCTCCCCGTCCGCAACCACCTCCATCTCCTCCCCCAGCCCCGCCCCTGGTCGTCTGGCCGCGTCCGCCTCGATTATCCCCAACGC
AACGTCCCCGTGGCCATCCGCCGCCGCCGCTTCCCGAGCCTCGGACTAACATTAAGAACAAACAAGTGTCGAAGATAGGTCTCAACATGGGGGAGACAGTTGGGCTGTTC
TTTGTAGGTATTGCAGCATTTCTTCAAATTTGTGTGGTGGGATTTTTGTCTTTGGGATTGGGAAGATGCACAAAGCTTGTTGTTGAATTTGTAAGAGGCTGCACAGAAGA
AGATGAAACACAGCAGGCAGCAGGCAGATAA
mRNA sequenceShow/hide mRNA sequence
ATGAAACGGCCATTGTCTACATTGATCTTAGTGATTTCCTGGTTTGCTTTCAGTATTTTTTGGATTCTTGTTGATTCCAAGACTCCTCATGGAGCTAGTCCTTCTCCCTC
GCCACATTATAGGTCGCCGCGTTCGTCTCCCCGTCCGCAACCACCTCCATCTCCTCCCCCAGCCCCGCCCCTGGTCGTCTGGCCGCGTCCGCCTCGATTATCCCCAACGC
AACGTCCCCGTGGCCATCCGCCGCCGCCGCTTCCCGAGCCTCGGACTAACATTAAGAACAAACAAGTGTCGAAGATAGGTCTCAACATGGGGGAGACAGTTGGGCTGTTC
TTTGTAGGTATTGCAGCATTTCTTCAAATTTGTGTGGTGGGATTTTTGTCTTTGGGATTGGGAAGATGCACAAAGCTTGTTGTTGAATTTGTAAGAGGCTGCACAGAAGA
AGATGAAACACAGCAGGCAGCAGGCAGATAA
Protein sequenceShow/hide protein sequence
MKRPLSTLILVISWFAFSIFWILVDSKTPHGASPSPSPHYRSPRSSPRPQPPPSPPPAPPLVVWPRPPRLSPTQRPRGHPPPPLPEPRTNIKNKQVSKIGLNMGETVGLF
FVGIAAFLQICVVGFLSLGLGRCTKLVVEFVRGCTEEDETQQAAGR