CuGenDBv2

Gene ID	Sed0027815
Organism	Sechium edule (Chayote v1)
Description	snRNA-activating protein complex subunit 4
Genome location	LG08:2356726..2358646
RNA-Seq Expression	Sed0027815
Synteny	Sed0027815
Gene Ontology terms	GO:0006355 - regulation of transcription, DNA-templated (biological process) GO:0005634 - nucleus (cellular component) GO:0000978 - RNA polymerase II proximal promoter sequence-specific DNA binding (molecular function) GO:0000981 - DNA-binding transcription factor activity, RNA polymerase II-specific (molecular function)
InterPro domains	NA

Homology

Show/hide homology

GenBank top hits

e value

%identity

Alignment

KAG6589626.1 Myb-like protein L, partial [Cucurbita argyrosperma subsp. sororia]

6.3e-48

70.3

Show/hide

Query:  AGVNPEDYIN-----SVAGD-----DPDDVDDFQLVRNIQKQFSIADDDQPLSALPP---DEEEDDFETLRRIQQRFGAYGSGTLSNKHDQSCDFDGPLE
        AGVN EDYIN       AGD     D DDVDD +L+RNIQ +FSIA D++PLS LPP   DEEEDDFETLR IQ+RF AY S  LSNK DQSCD DGPL+
Subjt:  AGVNPEDYIN-----SVAGD-----DPDDVDDFQLVRNIQKQFSIADDDQPLSALPP---DEEEDDFETLRRIQQRFGAYGSGTLSNKHDQSCDFDGPLE

Query:  MDSNST--ERSTSSKRSSMLTFEKGSMPKAALSFIDAIKKNRSQQKFICNKMIHLETRIEENKRL
        MDS++T  ER TSS+RSSM+ FEKGS+PKAAL+FIDAIKKNRSQQKFI +KMIHLE RIEENK+L
Subjt:  MDSNST--ERSTSSKRSSMLTFEKGSMPKAALSFIDAIKKNRSQQKFICNKMIHLETRIEENKRL

KAG7023314.1 Myb-like protein L [Cucurbita argyrosperma subsp. argyrosperma]

6.3e-48

70.3

Show/hide

Query:  AGVNPEDYIN-----SVAGD-----DPDDVDDFQLVRNIQKQFSIADDDQPLSALPP---DEEEDDFETLRRIQQRFGAYGSGTLSNKHDQSCDFDGPLE
        AGVN EDYIN       AGD     D DDVDD +L+RNIQ +FSIA D++PLS LPP   DEEEDDFETLR IQ+RF AY S  LSNK DQSCD DGPL+
Subjt:  AGVNPEDYIN-----SVAGD-----DPDDVDDFQLVRNIQKQFSIADDDQPLSALPP---DEEEDDFETLRRIQQRFGAYGSGTLSNKHDQSCDFDGPLE

Query:  MDSNST--ERSTSSKRSSMLTFEKGSMPKAALSFIDAIKKNRSQQKFICNKMIHLETRIEENKRL
        MDS++T  ER TSS+RSSM+ FEKGS+PKAAL+FIDAIKKNRSQQKFI +KMIHLE RIEENK+L
Subjt:  MDSNST--ERSTSSKRSSMLTFEKGSMPKAALSFIDAIKKNRSQQKFICNKMIHLETRIEENKRL

XP_022987958.1 uncharacterized protein LOC111485355 isoform X1 [Cucurbita maxima]

6.3e-48

69.7

Show/hide

Query:  AGVNPEDYIN-----SVAGD-----DPDDVDDFQLVRNIQKQFSIADDDQPLSALPP---DEEEDDFETLRRIQQRFGAYGSGTLSNKHDQSCDFDGPLE
        AGVN EDY+N       AGD     D DDVDD +L+RNIQ +FSIA D+QPLS LPP   DEEEDDFETLR IQ+RF AY S  LSNK DQSCD DGPL+
Subjt:  AGVNPEDYIN-----SVAGD-----DPDDVDDFQLVRNIQKQFSIADDDQPLSALPP---DEEEDDFETLRRIQQRFGAYGSGTLSNKHDQSCDFDGPLE

Query:  MDSNST--ERSTSSKRSSMLTFEKGSMPKAALSFIDAIKKNRSQQKFICNKMIHLETRIEENKRL
        MDS++T  ER TSS+RSSM+ FEKGS+PKAAL+FIDAIKKNRSQQKF+ +KMIHLE RIEENK+L
Subjt:  MDSNST--ERSTSSKRSSMLTFEKGSMPKAALSFIDAIKKNRSQQKFICNKMIHLETRIEENKRL

XP_022987959.1 uncharacterized protein LOC111485355 isoform X2 [Cucurbita maxima]

6.3e-48

69.7

Show/hide

Query:  AGVNPEDYIN-----SVAGD-----DPDDVDDFQLVRNIQKQFSIADDDQPLSALPP---DEEEDDFETLRRIQQRFGAYGSGTLSNKHDQSCDFDGPLE
        AGVN EDY+N       AGD     D DDVDD +L+RNIQ +FSIA D+QPLS LPP   DEEEDDFETLR IQ+RF AY S  LSNK DQSCD DGPL+
Subjt:  AGVNPEDYIN-----SVAGD-----DPDDVDDFQLVRNIQKQFSIADDDQPLSALPP---DEEEDDFETLRRIQQRFGAYGSGTLSNKHDQSCDFDGPLE

Query:  MDSNST--ERSTSSKRSSMLTFEKGSMPKAALSFIDAIKKNRSQQKFICNKMIHLETRIEENKRL
        MDS++T  ER TSS+RSSM+ FEKGS+PKAAL+FIDAIKKNRSQQKF+ +KMIHLE RIEENK+L
Subjt:  MDSNST--ERSTSSKRSSMLTFEKGSMPKAALSFIDAIKKNRSQQKFICNKMIHLETRIEENKRL

XP_023515735.1 uncharacterized protein LOC111779809 isoform X1 [Cucurbita pepo subsp. pepo]

1.4e-47

70.3

Show/hide

Query:  AGVNPEDYIN-----SVAGD-----DPDDVDDFQLVRNIQKQFSIADDDQPLSALPP---DEEEDDFETLRRIQQRFGAYGSGTLSNKHDQSCDFDGPLE
        AGVN EDYIN       AGD     D DDVDD +L+RNIQ +FSIA D+QPLS LPP   DEEEDDFE LR IQ+RF AY S  LSNK DQSCD DGPL+
Subjt:  AGVNPEDYIN-----SVAGD-----DPDDVDDFQLVRNIQKQFSIADDDQPLSALPP---DEEEDDFETLRRIQQRFGAYGSGTLSNKHDQSCDFDGPLE

Query:  MDSNST--ERSTSSKRSSMLTFEKGSMPKAALSFIDAIKKNRSQQKFICNKMIHLETRIEENKRL
        MDS +T  ER TSS+RSSM+ FEKGS+PKAAL+FIDAIKKNRSQQKFI +KMIHLE RIEENK+L
Subjt:  MDSNST--ERSTSSKRSSMLTFEKGSMPKAALSFIDAIKKNRSQQKFICNKMIHLETRIEENKRL

TrEMBL top hits

e value

%identity

Alignment

A0A6J1C075 uncharacterized protein LOC111007172 isoform X2

2.0e-44

Show/hide

Query:  GVNPEDYIN--------------SVAGDDPDDVDDFQLVRNIQKQFSIADDDQ-------PLSALP---PDEEEDDFETLRRIQQRFGAYGSGTLSNKHD
        G NPE+Y N              S  G D DDVDD +LVRNI+ +FSIA DD+       PLS LP   PDEEEDDFETLR IQ+RF AY S  LSN  D
Subjt:  GVNPEDYIN--------------SVAGDDPDDVDDFQLVRNIQKQFSIADDDQ-------PLSALP---PDEEEDDFETLRRIQQRFGAYGSGTLSNKHD

Query:  QSCDFDGPLEMDSNSTE--RSTSSKRSSMLTFEKGSMPKAALSFIDAIKKNRSQQKFICNKMIHLETRIEENKRL
        QSCDF GPLEMDSN T+  R TSS RSSML  EKG++PKAAL+FIDAIKKNRSQQKFI +KMIHLE RIEENK+L
Subjt:  QSCDFDGPLEMDSNSTE--RSTSSKRSSMLTFEKGSMPKAALSFIDAIKKNRSQQKFICNKMIHLETRIEENKRL

A0A6J1E2J4 uncharacterized protein LOC111430000 isoform X2

9.8e-47

69.09

Show/hide

Query:  AGVNPEDYIN-----SVAGD-----DPDDVDDFQLVRNIQKQFSIADDDQPLSALPP---DEEEDDFETLRRIQQRFGAYGSGTLSNKHDQSCDFDGPLE
        AGVN ED IN       AGD     D DDVDD +L+RNIQ +FS A D+QPLS LPP   DEEEDDFETLR IQ+RF AY S  LSNK DQSCD DGPL+
Subjt:  AGVNPEDYIN-----SVAGD-----DPDDVDDFQLVRNIQKQFSIADDDQPLSALPP---DEEEDDFETLRRIQQRFGAYGSGTLSNKHDQSCDFDGPLE

Query:  MDSNSTE--RSTSSKRSSMLTFEKGSMPKAALSFIDAIKKNRSQQKFICNKMIHLETRIEENKRL
        MDS++T+  R TSS+RSSM+ FEKGS+PKAAL+FIDAIKKNRSQQKFI +KMIHLE RIEENK+L
Subjt:  MDSNSTE--RSTSSKRSSMLTFEKGSMPKAALSFIDAIKKNRSQQKFICNKMIHLETRIEENKRL

A0A6J1E6Z7 uncharacterized protein LOC111430000 isoform X1

9.8e-47

69.09

Show/hide

Query:  AGVNPEDYIN-----SVAGD-----DPDDVDDFQLVRNIQKQFSIADDDQPLSALPP---DEEEDDFETLRRIQQRFGAYGSGTLSNKHDQSCDFDGPLE
        AGVN ED IN       AGD     D DDVDD +L+RNIQ +FS A D+QPLS LPP   DEEEDDFETLR IQ+RF AY S  LSNK DQSCD DGPL+
Subjt:  AGVNPEDYIN-----SVAGD-----DPDDVDDFQLVRNIQKQFSIADDDQPLSALPP---DEEEDDFETLRRIQQRFGAYGSGTLSNKHDQSCDFDGPLE

Query:  MDSNSTE--RSTSSKRSSMLTFEKGSMPKAALSFIDAIKKNRSQQKFICNKMIHLETRIEENKRL
        MDS++T+  R TSS+RSSM+ FEKGS+PKAAL+FIDAIKKNRSQQKFI +KMIHLE RIEENK+L
Subjt:  MDSNSTE--RSTSSKRSSMLTFEKGSMPKAALSFIDAIKKNRSQQKFICNKMIHLETRIEENKRL

A0A6J1JK98 uncharacterized protein LOC111485355 isoform X2

3.0e-48

69.7

Show/hide

Query:  AGVNPEDYIN-----SVAGD-----DPDDVDDFQLVRNIQKQFSIADDDQPLSALPP---DEEEDDFETLRRIQQRFGAYGSGTLSNKHDQSCDFDGPLE
        AGVN EDY+N       AGD     D DDVDD +L+RNIQ +FSIA D+QPLS LPP   DEEEDDFETLR IQ+RF AY S  LSNK DQSCD DGPL+
Subjt:  AGVNPEDYIN-----SVAGD-----DPDDVDDFQLVRNIQKQFSIADDDQPLSALPP---DEEEDDFETLRRIQQRFGAYGSGTLSNKHDQSCDFDGPLE

Query:  MDSNST--ERSTSSKRSSMLTFEKGSMPKAALSFIDAIKKNRSQQKFICNKMIHLETRIEENKRL
        MDS++T  ER TSS+RSSM+ FEKGS+PKAAL+FIDAIKKNRSQQKF+ +KMIHLE RIEENK+L
Subjt:  MDSNST--ERSTSSKRSSMLTFEKGSMPKAALSFIDAIKKNRSQQKFICNKMIHLETRIEENKRL

A0A6J1JKV7 uncharacterized protein LOC111485355 isoform X1

3.0e-48

69.7

Show/hide

Query:  AGVNPEDYIN-----SVAGD-----DPDDVDDFQLVRNIQKQFSIADDDQPLSALPP---DEEEDDFETLRRIQQRFGAYGSGTLSNKHDQSCDFDGPLE
        AGVN EDY+N       AGD     D DDVDD +L+RNIQ +FSIA D+QPLS LPP   DEEEDDFETLR IQ+RF AY S  LSNK DQSCD DGPL+
Subjt:  AGVNPEDYIN-----SVAGD-----DPDDVDDFQLVRNIQKQFSIADDDQPLSALPP---DEEEDDFETLRRIQQRFGAYGSGTLSNKHDQSCDFDGPLE

Query:  MDSNST--ERSTSSKRSSMLTFEKGSMPKAALSFIDAIKKNRSQQKFICNKMIHLETRIEENKRL
        MDS++T  ER TSS+RSSM+ FEKGS+PKAAL+FIDAIKKNRSQQKF+ +KMIHLE RIEENK+L
Subjt:  MDSNST--ERSTSSKRSSMLTFEKGSMPKAALSFIDAIKKNRSQQKFICNKMIHLETRIEENKRL

SwissProt top hits	e value	%identity	Alignment
No hits found

Arabidopsis top hits

e value

%identity

Alignment

AT3G18100.1 myb domain protein 4r1

1.0e-11

29.53

Show/hide

Query:  TIRSPPARKTTTWKSSEEPAGVNPEDYINSVAGDDPDDVDDFQLVRNIQKQFSIA-DDDQPLSALPPDEEEDDFETLRRIQQRFGAY------------G
        TI+S  A      +SS  P G++           D +  DDF+++R+I+ Q S++ D   P   L  DEE+D FETLR I++RF AY             
Subjt:  TIRSPPARKTTTWKSSEEPAGVNPEDYINSVAGDDPDDVDDFQLVRNIQKQFSIA-DDDQPLSALPPDEEEDDFETLRRIQQRFGAY------------G

Query:  SGTLSNKHDQSCDFDGPLEMDSNSTERSTSSKRSSM------------LTFEKGSMPKAALSFIDAIKKNRSQQKFICNKMIHLETRIEENKR
         G     H+   +    +   SN+ E      +S +            +     S P+AA +F+DAI++NR+ QKF+  K+  +E  IE+N++
Subjt:  SGTLSNKHDQSCDFDGPLEMDSNSTERSTSSKRSSM------------LTFEKGSMPKAALSFIDAIKKNRSQQKFICNKMIHLETRIEENKR

AT3G18100.2 myb domain protein 4r1

3.5e-04

46.15

Show/hide

Query:  SMPKAALSFIDAIKKNRSQQKFICNKMIHLETRIEENKR
        S P+AA +F+DAI++NR+ QKF+  K+  +E  IE+N++
Subjt:  SMPKAALSFIDAIKKNRSQQKFICNKMIHLETRIEENKR

AT3G18100.3 myb domain protein 4r1

1.1e-05

37.93

Show/hide

Query:  TIRSPPARKTTTWKSSEEPAGVNPEDYINSVAGDDPDDVDDFQLVRNIQKQFSIA-DDDQPLSALPPDEEEDDFETLRRIQQRFGAY
        TI+S  A      +SS  P G++           D +  DDF+++R+I+ Q S++ D   P   L  DEE+D FETLR I++RF AY
Subjt:  TIRSPPARKTTTWKSSEEPAGVNPEDYINSVAGDDPDDVDDFQLVRNIQKQFSIA-DDDQPLSALPPDEEEDDFETLRRIQQRFGAY

Sequences

Show/hide sequences

CDS sequence

Show/hide CDS sequence

ATGACGGCGGCGGCGGCGGCGGCGACGATTCGCTCACCGCCGGCGAGGAAGACGACGACATGGAAGTCCTCAGAGGAGCCTGCCGGCGTTAATCCTGAGGATTACATTAA
TTCTGTCGCCGGAGATGATCCAGATGATGTTGATGATTTTCAACTTGTTCGGAATATTCAGAAACAGTTCTCGATTGCCGACGATGATCAGCCGTTGAGTGCTCTCCCAC
CGGACGAGGAGGAAGACGATTTCGAGACGCTTCGTCGGATTCAGCAGCGCTTTGGTGCGTATGGAAGCGGTACTTTGAGCAATAAACATGATCAGTCTTGTGACTTTGAT
GGGCCTCTCGAGATGGATTCTAACAGCACAGAGAGATCGACATCCTCAAAAAGGTCATCTATGCTAACCTTTGAAAAGGGAAGCATGCCAAAGGCTGCATTGTCATTTAT
CGATGCTATCAAGAAGAATAGGTCACAACAGAAGTTTATATGTAATAAGATGATTCATCTTGAAACTAGAATTGAGGAGAACAAAAGGCTCTGA

mRNA sequence

Show/hide mRNA sequence

Protein sequence

Show/hide protein sequence

MTAAAAAATIRSPPARKTTTWKSSEEPAGVNPEDYINSVAGDDPDDVDDFQLVRNIQKQFSIADDDQPLSALPPDEEEDDFETLRRIQQRFGAYGSGTLSNKHDQSCDFD
GPLEMDSNSTERSTSSKRSSMLTFEKGSMPKAALSFIDAIKKNRSQQKFICNKMIHLETRIEENKRL

Sed0027815 (gene) of Chayote v1 genome