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Sed0027847 (gene) of Chayote v1 genome

Gene IDSed0027847
OrganismSechium edule (Chayote v1)
DescriptionTy3-gypsy retrotransposon protein
Genome locationLG08:6713662..6713919
RNA-Seq ExpressionSed0027847
SyntenySed0027847
Gene Ontology termsNA
InterPro domainsNA


Homology Show/hide homology
GenBank top hitse value%identityAlignment
XP_031735972.1 uncharacterized protein LOC116401693 [Cucumis sativus]1.3e-1160Show/hide
Query:  MSVMMAGDGGDDRMAEFERKLEQMMKTIEERDLEIAYLKNQMQSRETAESSQSPHERVNDKGKNPLREAQPQSQT
        MSVMMA    +  MAE ERK+  +MK ++ERD EIA LK QMQ+RETAESSQ+P  +V+DKGKN ++E QPQ Q+
Subjt:  MSVMMAGDGGDDRMAEFERKLEQMMKTIEERDLEIAYLKNQMQSRETAESSQSPHERVNDKGKNPLREAQPQSQT
XP_031737053.1 uncharacterized protein LOC116402138 [Cucumis sativus]1.3e-1160Show/hide
Query:  MSVMMAGDGGDDRMAEFERKLEQMMKTIEERDLEIAYLKNQMQSRETAESSQSPHERVNDKGKNPLREAQPQSQT
        MSVMMA    +  MAE ERK+  +MK ++ERD EIA LK QMQ+RETAESSQ+P  +V+DKGKN ++E QPQ Q+
Subjt:  MSVMMAGDGGDDRMAEFERKLEQMMKTIEERDLEIAYLKNQMQSRETAESSQSPHERVNDKGKNPLREAQPQSQT
XP_031739134.1 uncharacterized protein LOC116402863 [Cucumis sativus]1.3e-1160Show/hide
Query:  MSVMMAGDGGDDRMAEFERKLEQMMKTIEERDLEIAYLKNQMQSRETAESSQSPHERVNDKGKNPLREAQPQSQT
        MSVMMA    +  MAE ERK+  +MK ++ERD EIA LK QMQ+RETAESSQ+P  +V+DKGKN ++E QPQ Q+
Subjt:  MSVMMAGDGGDDRMAEFERKLEQMMKTIEERDLEIAYLKNQMQSRETAESSQSPHERVNDKGKNPLREAQPQSQT
XP_031742032.1 uncharacterized protein LOC116404025 [Cucumis sativus]1.3e-1160Show/hide
Query:  MSVMMAGDGGDDRMAEFERKLEQMMKTIEERDLEIAYLKNQMQSRETAESSQSPHERVNDKGKNPLREAQPQSQT
        MSVMMA    +  MAE ERK+  +MK ++ERD EIA LK QMQ+RETAESSQ+P  +V+DKGKN ++E QPQ Q+
Subjt:  MSVMMAGDGGDDRMAEFERKLEQMMKTIEERDLEIAYLKNQMQSRETAESSQSPHERVNDKGKNPLREAQPQSQT
XP_031742199.1 uncharacterized protein LOC105435721 [Cucumis sativus]1.3e-1160Show/hide
Query:  MSVMMAGDGGDDRMAEFERKLEQMMKTIEERDLEIAYLKNQMQSRETAESSQSPHERVNDKGKNPLREAQPQSQT
        MSVMMA    +  MAE ERK+  +MK ++ERD EIA LK QMQ+RETAESSQ+P  +V+DKGKN ++E QPQ Q+
Subjt:  MSVMMAGDGGDDRMAEFERKLEQMMKTIEERDLEIAYLKNQMQSRETAESSQSPHERVNDKGKNPLREAQPQSQT
TrEMBL top hitse value%identityAlignment
A0A5A7TYE9 Ty3-gypsy retrotransposon protein2.7e-1056Show/hide
Query:  MSVMMAGDGGDDRMAEFERKLEQMMKTIEERDLEIAYLKNQMQSRETAESSQSPHERVNDKGKNPLREAQPQSQT
        MSVMMA    +  MAE ERK+  +MK +EERD EI  L+ QM++RETAESSQ+P  +  DKGKN ++E QPQ Q+
Subjt:  MSVMMAGDGGDDRMAEFERKLEQMMKTIEERDLEIAYLKNQMQSRETAESSQSPHERVNDKGKNPLREAQPQSQT
A0A5A7UF60 Ty3-gypsy retrotransposon protein1.3e-0954.67Show/hide
Query:  MSVMMAGDGGDDRMAEFERKLEQMMKTIEERDLEIAYLKNQMQSRETAESSQSPHERVNDKGKNPLREAQPQSQT
        MSVMMA    +  MAE E+K+  +MK +EERD EI  L+ QM++RETAESSQ+P  +  DKGKN ++E QPQ Q+
Subjt:  MSVMMAGDGGDDRMAEFERKLEQMMKTIEERDLEIAYLKNQMQSRETAESSQSPHERVNDKGKNPLREAQPQSQT
A0A5A7VDN4 Ty3-gypsy retrotransposon protein7.8e-1054.67Show/hide
Query:  MSVMMAGDGGDDRMAEFERKLEQMMKTIEERDLEIAYLKNQMQSRETAESSQSPHERVNDKGKNPLREAQPQSQT
        MSVMMA    +  MAE ERK+  +MK +EERD EI  L+ QM++RETAESSQ+P  +  DKGKN +++ QPQ Q+
Subjt:  MSVMMAGDGGDDRMAEFERKLEQMMKTIEERDLEIAYLKNQMQSRETAESSQSPHERVNDKGKNPLREAQPQSQT
A0A5D3BY54 Ty3-gypsy retrotransposon protein6.0e-1056Show/hide
Query:  MSVMMAGDGGDDRMAEFERKLEQMMKTIEERDLEIAYLKNQMQSRETAESSQSPHERVNDKGKNPLREAQPQSQT
        MSVMMA    +  MAE ERK+  +MK +EERD EI  L+ QM++RETAESSQ+P  +  DKGKN ++E QPQ Q+
Subjt:  MSVMMAGDGGDDRMAEFERKLEQMMKTIEERDLEIAYLKNQMQSRETAESSQSPHERVNDKGKNPLREAQPQSQT
A0A5D3DH20 Ty3-gypsy retrotransposon protein1.3e-0954.67Show/hide
Query:  MSVMMAGDGGDDRMAEFERKLEQMMKTIEERDLEIAYLKNQMQSRETAESSQSPHERVNDKGKNPLREAQPQSQT
        MSVMMA    +  MAE +RK+  +MK +EERD EI  L+ QM++RETAESSQ+P  +  DKGKN ++E QPQ Q+
Subjt:  MSVMMAGDGGDDRMAEFERKLEQMMKTIEERDLEIAYLKNQMQSRETAESSQSPHERVNDKGKNPLREAQPQSQT
SwissProt top hitse value%identityAlignment
No hits found
Arabidopsis top hitse value%identityAlignment
No hits found

Sequences Show/hide sequences
CDS sequenceShow/hide CDS sequence
ATGTCTGTTATGATGGCTGGTGATGGAGGCGATGATCGAATGGCGGAGTTTGAAAGAAAGCTCGAGCAGATGATGAAAACAATTGAGGAAAGAGACTTAGAGATCGCTTA
CCTCAAAAATCAAATGCAGAGCCGAGAGACGGCTGAATCAAGCCAGAGTCCACATGAGAGAGTCAATGATAAAGGAAAGAACCCTCTCCGTGAGGCACAACCACAATCGC
AGACTCGGCCTCGCCGCTTCCTTATCTCTGTCCAATGA
mRNA sequenceShow/hide mRNA sequence
ATGTCTGTTATGATGGCTGGTGATGGAGGCGATGATCGAATGGCGGAGTTTGAAAGAAAGCTCGAGCAGATGATGAAAACAATTGAGGAAAGAGACTTAGAGATCGCTTA
CCTCAAAAATCAAATGCAGAGCCGAGAGACGGCTGAATCAAGCCAGAGTCCACATGAGAGAGTCAATGATAAAGGAAAGAACCCTCTCCGTGAGGCACAACCACAATCGC
AGACTCGGCCTCGCCGCTTCCTTATCTCTGTCCAATGA
Protein sequenceShow/hide protein sequence
MSVMMAGDGGDDRMAEFERKLEQMMKTIEERDLEIAYLKNQMQSRETAESSQSPHERVNDKGKNPLREAQPQSQTRPRRFLISVQ