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Sed0027851 (gene) of Chayote v1 genome

Gene IDSed0027851
OrganismSechium edule (Chayote v1)
DescriptionTranscription elongation factor SPT4 homolog
Genome locationLG05:37996880..38005420
RNA-Seq ExpressionSed0027851
SyntenySed0027851
Gene Ontology termsGO:0006325 - chromatin organization (biological process)
GO:0006397 - mRNA processing (biological process)
GO:0006414 - translational elongation (biological process)
GO:0032786 - positive regulation of DNA-templated transcription, elongation (biological process)
GO:0034243 - regulation of transcription elongation from RNA polymerase II promoter (biological process)
GO:0032044 - DSIF complex (cellular component)
GO:0000993 - RNA polymerase II complex binding (molecular function)
GO:0003746 - translation elongation factor activity (molecular function)
GO:0008270 - zinc ion binding (molecular function)
InterPro domainsIPR009287 - Transcription initiation Spt4
IPR022800 - Spt4/RpoE2 zinc finger
IPR029040 - RNA polymerase subunit RPABC4/transcription elongation factor Spt4
IPR038510 - Spt4 superfamily


Homology Show/hide homology
GenBank top hitse value%identityAlignment
XP_008461561.1 PREDICTED: transcription elongation factor SPT4 homolog 2 [Cucumis melo]5.0e-6297.41Show/hide
Query:  MASVPAQIPTSFGHELRACLRCRLVKTYDQFRESGCENCPFFKMDEDHERVVECTTPNFNGIISVMDPVRSWAARWLRIGRFAPGCYTLAVSEALPEDLQ
        MAS PAQIPTSFGHELRACLRCRLVKTYDQFRESGCENCPFFKMDEDHERVVECTTPNFNGIISVMDP RSWAARWLRIGRF PGCYTLAVSEALPEDLQ
Subjt:  MASVPAQIPTSFGHELRACLRCRLVKTYDQFRESGCENCPFFKMDEDHERVVECTTPNFNGIISVMDPVRSWAARWLRIGRFAPGCYTLAVSEALPEDLQ

Query:  NLCEEERVQYAPPKRV
        NLCEEERVQYAPPKRV
Subjt:  NLCEEERVQYAPPKRV

XP_022143259.1 transcription elongation factor SPT4 homolog 2 [Momordica charantia]5.0e-6297.41Show/hide
Query:  MASVPAQIPTSFGHELRACLRCRLVKTYDQFRESGCENCPFFKMDEDHERVVECTTPNFNGIISVMDPVRSWAARWLRIGRFAPGCYTLAVSEALPEDLQ
        MAS PAQIPTSFGHELRACLRCRLVKTYDQFRESGCENCPFFKMDEDHERVVECTTPNFNGIISVMDP RSWAARWLRIGRF PGCYTLAVSEALPEDLQ
Subjt:  MASVPAQIPTSFGHELRACLRCRLVKTYDQFRESGCENCPFFKMDEDHERVVECTTPNFNGIISVMDPVRSWAARWLRIGRFAPGCYTLAVSEALPEDLQ

Query:  NLCEEERVQYAPPKRV
        NLCEEERVQYAPPKRV
Subjt:  NLCEEERVQYAPPKRV

XP_022948256.1 transcription elongation factor SPT4 homolog 2 [Cucurbita moschata]2.9e-6297.41Show/hide
Query:  MASVPAQIPTSFGHELRACLRCRLVKTYDQFRESGCENCPFFKMDEDHERVVECTTPNFNGIISVMDPVRSWAARWLRIGRFAPGCYTLAVSEALPEDLQ
        MAS PAQIPTSFGHELRACLRCRLVKTYDQFRESGCENCPFFKMDEDHERVVECTTPNFNGIISVMDP RSWAARWLRIGRFAPGCYTLAVSEALPEDLQ
Subjt:  MASVPAQIPTSFGHELRACLRCRLVKTYDQFRESGCENCPFFKMDEDHERVVECTTPNFNGIISVMDPVRSWAARWLRIGRFAPGCYTLAVSEALPEDLQ

Query:  NLCEEERVQYAPPKRV
        N+CEEERVQYAPPKRV
Subjt:  NLCEEERVQYAPPKRV

XP_031282363.1 transcription elongation factor SPT4 homolog 2 [Pistacia vera]2.8e-6093.1Show/hide
Query:  MASVPAQIPTSFGHELRACLRCRLVKTYDQFRESGCENCPFFKMDEDHERVVECTTPNFNGIISVMDPVRSWAARWLRIGRFAPGCYTLAVSEALPEDLQ
        M S PAQIPTSFGHELRACLRCRLVKTYDQFRESGCENCPFFKMDEDHERVV+CTTPNFNGIISVMDP RSWAARWLRIGRF PGCYTLAVSEALPEDLQ
Subjt:  MASVPAQIPTSFGHELRACLRCRLVKTYDQFRESGCENCPFFKMDEDHERVVECTTPNFNGIISVMDPVRSWAARWLRIGRFAPGCYTLAVSEALPEDLQ

Query:  NLCEEERVQYAPPKRV
        NLCE+ER+QY PPKRV
Subjt:  NLCEEERVQYAPPKRV

XP_038881174.1 transcription elongation factor SPT4 homolog 2 [Benincasa hispida]1.7e-6298.28Show/hide
Query:  MASVPAQIPTSFGHELRACLRCRLVKTYDQFRESGCENCPFFKMDEDHERVVECTTPNFNGIISVMDPVRSWAARWLRIGRFAPGCYTLAVSEALPEDLQ
        MASVPAQIPTSFGHELRACLRCRLVKTYDQFRESGCENCPFFKMDEDHERVVECTTPNFNGIISVMDP RSWAARWLRIGRF PGCYTLAVSEALPEDLQ
Subjt:  MASVPAQIPTSFGHELRACLRCRLVKTYDQFRESGCENCPFFKMDEDHERVVECTTPNFNGIISVMDPVRSWAARWLRIGRFAPGCYTLAVSEALPEDLQ

Query:  NLCEEERVQYAPPKRV
        NLCEEERVQYAPPKRV
Subjt:  NLCEEERVQYAPPKRV

TrEMBL top hitse value%identityAlignment
A0A0A0L9Q3 Transcription elongation factor SPT4 homolog2.4e-6297.41Show/hide
Query:  MASVPAQIPTSFGHELRACLRCRLVKTYDQFRESGCENCPFFKMDEDHERVVECTTPNFNGIISVMDPVRSWAARWLRIGRFAPGCYTLAVSEALPEDLQ
        MAS PAQIPTSFGHELRACLRCRLVKTYDQFRESGCENCPFFKMDEDHERVVECTTPNFNGIISVMDP RSWAARWLRIGRF PGCYTLAVSEALPEDLQ
Subjt:  MASVPAQIPTSFGHELRACLRCRLVKTYDQFRESGCENCPFFKMDEDHERVVECTTPNFNGIISVMDPVRSWAARWLRIGRFAPGCYTLAVSEALPEDLQ

Query:  NLCEEERVQYAPPKRV
        NLCEEERVQYAPPKRV
Subjt:  NLCEEERVQYAPPKRV

A0A1S3CFH1 Transcription elongation factor SPT4 homolog2.4e-6297.41Show/hide
Query:  MASVPAQIPTSFGHELRACLRCRLVKTYDQFRESGCENCPFFKMDEDHERVVECTTPNFNGIISVMDPVRSWAARWLRIGRFAPGCYTLAVSEALPEDLQ
        MAS PAQIPTSFGHELRACLRCRLVKTYDQFRESGCENCPFFKMDEDHERVVECTTPNFNGIISVMDP RSWAARWLRIGRF PGCYTLAVSEALPEDLQ
Subjt:  MASVPAQIPTSFGHELRACLRCRLVKTYDQFRESGCENCPFFKMDEDHERVVECTTPNFNGIISVMDPVRSWAARWLRIGRFAPGCYTLAVSEALPEDLQ

Query:  NLCEEERVQYAPPKRV
        NLCEEERVQYAPPKRV
Subjt:  NLCEEERVQYAPPKRV

A0A6J1CNB4 Transcription elongation factor SPT4 homolog2.4e-6297.41Show/hide
Query:  MASVPAQIPTSFGHELRACLRCRLVKTYDQFRESGCENCPFFKMDEDHERVVECTTPNFNGIISVMDPVRSWAARWLRIGRFAPGCYTLAVSEALPEDLQ
        MAS PAQIPTSFGHELRACLRCRLVKTYDQFRESGCENCPFFKMDEDHERVVECTTPNFNGIISVMDP RSWAARWLRIGRF PGCYTLAVSEALPEDLQ
Subjt:  MASVPAQIPTSFGHELRACLRCRLVKTYDQFRESGCENCPFFKMDEDHERVVECTTPNFNGIISVMDPVRSWAARWLRIGRFAPGCYTLAVSEALPEDLQ

Query:  NLCEEERVQYAPPKRV
        NLCEEERVQYAPPKRV
Subjt:  NLCEEERVQYAPPKRV

A0A6J1G8V8 Transcription elongation factor SPT4 homolog1.4e-6297.41Show/hide
Query:  MASVPAQIPTSFGHELRACLRCRLVKTYDQFRESGCENCPFFKMDEDHERVVECTTPNFNGIISVMDPVRSWAARWLRIGRFAPGCYTLAVSEALPEDLQ
        MAS PAQIPTSFGHELRACLRCRLVKTYDQFRESGCENCPFFKMDEDHERVVECTTPNFNGIISVMDP RSWAARWLRIGRFAPGCYTLAVSEALPEDLQ
Subjt:  MASVPAQIPTSFGHELRACLRCRLVKTYDQFRESGCENCPFFKMDEDHERVVECTTPNFNGIISVMDPVRSWAARWLRIGRFAPGCYTLAVSEALPEDLQ

Query:  NLCEEERVQYAPPKRV
        N+CEEERVQYAPPKRV
Subjt:  NLCEEERVQYAPPKRV

A0A6J1K6X8 Transcription elongation factor SPT4 homolog1.4e-6297.41Show/hide
Query:  MASVPAQIPTSFGHELRACLRCRLVKTYDQFRESGCENCPFFKMDEDHERVVECTTPNFNGIISVMDPVRSWAARWLRIGRFAPGCYTLAVSEALPEDLQ
        MAS PAQIPTSFGHELRACLRCRLVKTYDQFRESGCENCPFFKMDEDHERVVECTTPNFNGIISVMDP RSWAARWLRIGRFAPGCYTLAVSEALPEDLQ
Subjt:  MASVPAQIPTSFGHELRACLRCRLVKTYDQFRESGCENCPFFKMDEDHERVVECTTPNFNGIISVMDPVRSWAARWLRIGRFAPGCYTLAVSEALPEDLQ

Query:  NLCEEERVQYAPPKRV
        N+CEEERVQYAPPKRV
Subjt:  NLCEEERVQYAPPKRV

SwissProt top hitse value%identityAlignment
P63271 Transcription elongation factor SPT4-A3.2e-1941.35Show/hide
Query:  IPTSFGHELRACLRCRLVKTYDQFRESGCENC-PFFKMDEDHERVVECTTPNFNGIISVMDPVRSWAARWLRIGRFAPGCYTLAVSEALPEDLQNLCEEE
        +P    H LRACL C LVKT DQF   GC+NC  + +M  + E V +CT+ +F+GII++M P  SW ++W R+  F PG Y ++V+  LP+ +    +  
Subjt:  IPTSFGHELRACLRCRLVKTYDQFRESGCENC-PFFKMDEDHERVVECTTPNFNGIISVMDPVRSWAARWLRIGRFAPGCYTLAVSEALPEDLQNLCEEE

Query:  RVQY
         V Y
Subjt:  RVQY

Q3SYX6 Transcription elongation factor SPT43.2e-1941.35Show/hide
Query:  IPTSFGHELRACLRCRLVKTYDQFRESGCENC-PFFKMDEDHERVVECTTPNFNGIISVMDPVRSWAARWLRIGRFAPGCYTLAVSEALPEDLQNLCEEE
        +P    H LRACL C LVKT DQF   GC+NC  + +M  + E V +CT+ +F+GII++M P  SW ++W R+  F PG Y ++V+  LP+ +    +  
Subjt:  IPTSFGHELRACLRCRLVKTYDQFRESGCENC-PFFKMDEDHERVVECTTPNFNGIISVMDPVRSWAARWLRIGRFAPGCYTLAVSEALPEDLQNLCEEE

Query:  RVQY
         V Y
Subjt:  RVQY

Q6DGQ0 Transcription elongation factor SPT48.4e-2048.89Show/hide
Query:  IPTSFGHELRACLRCRLVKTYDQFRESGCENC-PFFKMDEDHERVVECTTPNFNGIISVMDPVRSWAARWLRIGRFAPGCYTLAVSEALP
        +P    H LRACL C LVKT DQF   GC+NC  + +M  + E V ECT+ +F+G+I++M P  SW A+W RIG F PG Y + V+  LP
Subjt:  IPTSFGHELRACLRCRLVKTYDQFRESGCENC-PFFKMDEDHERVVECTTPNFNGIISVMDPVRSWAARWLRIGRFAPGCYTLAVSEALP

Q8LCQ3 Transcription elongation factor SPT4 homolog 13.3e-5681.03Show/hide
Query:  MASVPAQIPTSFGHELRACLRCRLVKTYDQFRESGCENCPFFKMDEDHERVVECTTPNFNGIISVMDPVRSWAARWLRIGRFAPGCYTLAVSEALPEDLQ
        M   PAQIPTSFGHELRACLRCRLVKTYDQFR+SGCENCPFFK+++DHER+V+ TTPNFNGIIS+MDP RSWAARWLRIG+FAPGCYTLAVSEALPE++Q
Subjt:  MASVPAQIPTSFGHELRACLRCRLVKTYDQFRESGCENCPFFKMDEDHERVVECTTPNFNGIISVMDPVRSWAARWLRIGRFAPGCYTLAVSEALPEDLQ

Query:  NLCEEERVQYAPPKRV
         +C++ RVQY PPKR+
Subjt:  NLCEEERVQYAPPKRV

Q94C60 Transcription elongation factor SPT4 homolog 21.0e-5785.34Show/hide
Query:  MASVPAQIPTSFGHELRACLRCRLVKTYDQFRESGCENCPFFKMDEDHERVVECTTPNFNGIISVMDPVRSWAARWLRIGRFAPGCYTLAVSEALPEDLQ
        M S PAQIPTSFGHELRACLRCRLVKTYDQFR++GCENCPFFKM+EDHER+VE TTPNFNGIISVMDP RSWAARWLRIG+FAPGCYTLAVSE LPE++Q
Subjt:  MASVPAQIPTSFGHELRACLRCRLVKTYDQFRESGCENCPFFKMDEDHERVVECTTPNFNGIISVMDPVRSWAARWLRIGRFAPGCYTLAVSEALPEDLQ

Query:  NLCEEERVQYAPPKRV
        +LC+EERVQY  PKR+
Subjt:  NLCEEERVQYAPPKRV

Arabidopsis top hitse value%identityAlignment
AT5G08565.1 Transcription initiation Spt4-like protein2.3e-5781.03Show/hide
Query:  MASVPAQIPTSFGHELRACLRCRLVKTYDQFRESGCENCPFFKMDEDHERVVECTTPNFNGIISVMDPVRSWAARWLRIGRFAPGCYTLAVSEALPEDLQ
        M   PAQIPTSFGHELRACLRCRLVKTYDQFR+SGCENCPFFK+++DHER+V+ TTPNFNGIIS+MDP RSWAARWLRIG+FAPGCYTLAVSEALPE++Q
Subjt:  MASVPAQIPTSFGHELRACLRCRLVKTYDQFRESGCENCPFFKMDEDHERVVECTTPNFNGIISVMDPVRSWAARWLRIGRFAPGCYTLAVSEALPEDLQ

Query:  NLCEEERVQYAPPKRV
         +C++ RVQY PPKR+
Subjt:  NLCEEERVQYAPPKRV

AT5G08565.2 Transcription initiation Spt4-like protein1.4e-4668.97Show/hide
Query:  MASVPAQIPTSFGHELRACLRCRLVKTYDQFRESGCENCPFFKMDEDHERVVECTTPNFNGIISVMDPVRSWAARWLRIGRFAPGCYTLAVSEALPEDLQ
        M   PAQIPTSFGHELRACLRCRLVKTYDQFR+SGCENCPFFK+++DHER+V+ TTPNFNG +S    +       L  G+FAPGCYTLAVSEALPE++Q
Subjt:  MASVPAQIPTSFGHELRACLRCRLVKTYDQFRESGCENCPFFKMDEDHERVVECTTPNFNGIISVMDPVRSWAARWLRIGRFAPGCYTLAVSEALPEDLQ

Query:  NLCEEERVQYAPPKRV
         +C++ RVQY PPKR+
Subjt:  NLCEEERVQYAPPKRV

AT5G63670.1 SPT4 homolog 27.2e-5985.34Show/hide
Query:  MASVPAQIPTSFGHELRACLRCRLVKTYDQFRESGCENCPFFKMDEDHERVVECTTPNFNGIISVMDPVRSWAARWLRIGRFAPGCYTLAVSEALPEDLQ
        M S PAQIPTSFGHELRACLRCRLVKTYDQFR++GCENCPFFKM+EDHER+VE TTPNFNGIISVMDP RSWAARWLRIG+FAPGCYTLAVSE LPE++Q
Subjt:  MASVPAQIPTSFGHELRACLRCRLVKTYDQFRESGCENCPFFKMDEDHERVVECTTPNFNGIISVMDPVRSWAARWLRIGRFAPGCYTLAVSEALPEDLQ

Query:  NLCEEERVQYAPPKRV
        +LC+EERVQY  PKR+
Subjt:  NLCEEERVQYAPPKRV

AT5G63670.2 SPT4 homolog 23.4e-4089.87Show/hide
Query:  MASVPAQIPTSFGHELRACLRCRLVKTYDQFRESGCENCPFFKMDEDHERVVECTTPNFNGIISVMDPVRSWAARWLRI
        M S PAQIPTSFGHELRACLRCRLVKTYDQFR++GCENCPFFKM+EDHER+VE TTPNFNGIISVMDP RSWAARWLRI
Subjt:  MASVPAQIPTSFGHELRACLRCRLVKTYDQFRESGCENCPFFKMDEDHERVVECTTPNFNGIISVMDPVRSWAARWLRI


Sequences Show/hide sequences
CDS sequenceShow/hide CDS sequence
ATGGCAAGCGTACCTGCTCAAATTCCCACCAGTTTCGGCCACGAGCTCAGAGCTTGTCTTCGTTGTCGTCTCGTCAAAACTTACGATCAGTTTCGAGAATCGGGCTGTGA
GAATTGCCCCTTCTTCAAGATGGACGAGGACCACGAGCGTGTTGTAGAGTGTACTACTCCTAATTTTAATGGGATAATTTCAGTTATGGATCCTGTCAGAAGTTGGGCTG
CTAGATGGCTGCGAATTGGAAGATTTGCCCCAGGTTGCTACACTCTTGCAGTCTCAGAGGCCCTCCCTGAAGATTTGCAGAATCTATGCGAAGAGGAGCGTGTGCAATAC
GCACCACCAAAACGTGTTTGA
mRNA sequenceShow/hide mRNA sequence
ACCCTTTGTCCCATAATTTTCTTCTTTATTTTGAAGCCCGAATATCGTTTCCAGCTTCTTCCTCCTCCTCCATCAGCCTTTTTGTCCCCTAGTTTTCTTTTACGGCCGAT
GCAGTGCAGCAGACCTCATTGACGCCGCCCACCGGACGTTACCGCCGCCACCGCCGCTGACCGTACATCTAAAGTAATCAGCAAACGAACACGAAGGGATCAGATCAAAT
GGCAAGCGTACCTGCTCAAATTCCCACCAGTTTCGGCCACGAGCTCAGAGCTTGTCTTCGTTGTCGTCTCGTCAAAACTTACGATCAGTTTCGAGAATCGGGCTGTGAGA
ATTGCCCCTTCTTCAAGATGGACGAGGACCACGAGCGTGTTGTAGAGTGTACTACTCCTAATTTTAATGGGATAATTTCAGTTATGGATCCTGTCAGAAGTTGGGCTGCT
AGATGGCTGCGAATTGGAAGATTTGCCCCAGGTTGCTACACTCTTGCAGTCTCAGAGGCCCTCCCTGAAGATTTGCAGAATCTATGCGAAGAGGAGCGTGTGCAATACGC
ACCACCAAAACGTGTTTGAATGTATGTTAATCTCTAGCTTGCTTATTCTGATTTGAAATAATTCCTTCTTGTTGATTCTCTAGTAACTTGTTGAAAGTATAGTTAAAATA
CCTTGCATTGTACATCTTAATTTGCTCCCCTTGTGCTTCCTTATTGCTATTATACATACTCACTAGTGGAAGAGGTTGAATTTGAGTTGCTTAGAACATTAGGTACATTC
ATGCAAAACAAGCACAATCTAAATATTACCGTGGTATTCATAAAAAAAAAATTATATAACATAAACTTGGTGATCT
Protein sequenceShow/hide protein sequence
MASVPAQIPTSFGHELRACLRCRLVKTYDQFRESGCENCPFFKMDEDHERVVECTTPNFNGIISVMDPVRSWAARWLRIGRFAPGCYTLAVSEALPEDLQNLCEEERVQY
APPKRV