CuGenDBv2

Gene ID	Sed0027881
Organism	Sechium edule (Chayote v1)
Description	2Fe-2S ferredoxin-type domain-containing protein
Genome location	LG07:11133381..11136269
RNA-Seq Expression	Sed0027881
Synteny	Sed0027881
Gene Ontology terms	GO:0051536 - iron-sulfur cluster binding (molecular function)
InterPro domains	IPR001041 - 2Fe-2S ferredoxin-type iron-sulfur binding domain IPR036010 - 2Fe-2S ferredoxin-like superfamily

Homology

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GenBank top hits

e value

%identity

Alignment

KAG6593474.1 Photosynthetic NDH subunit of subcomplex B 3, chloroplastic, partial [Cucurbita argyrosperma subsp. sororia]

2.7e-20

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Query:  SRFLLNCAGGGTCGTCLVE---------------------KPKNWRLACQTTVGIPDSRGMVISRSLFDNVVEQNSVIFSLVVMSLLFVFIWMQLVVQQL
        SRFLLNCAGGGTCGTC+VE                     KPKNWRLACQT VG PDSRGMV                                  VQQL
Subjt:  SRFLLNCAGGGTCGTCLVE---------------------KPKNWRLACQTTVGIPDSRGMVISRSLFDNVVEQNSVIFSLVVMSLLFVFIWMQLVVQQL

Query:  PEWKAPEWGYEKVELSGSSESSESA
        PEWKA EWGYEKVELS SSESSESA
Subjt:  PEWKAPEWGYEKVELSGSSESSESA

KAG7025817.1 Photosynthetic NDH subunit of subcomplex B 3, chloroplastic [Cucurbita argyrosperma subsp. argyrosperma]

2.7e-20

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Query:  SRFLLNCAGGGTCGTCLVE---------------------KPKNWRLACQTTVGIPDSRGMVISRSLFDNVVEQNSVIFSLVVMSLLFVFIWMQLVVQQL
        SRFLLNCAGGGTCGTC+VE                     KPKNWRLACQT VG PDSRGMV                                  VQQL
Subjt:  SRFLLNCAGGGTCGTCLVE---------------------KPKNWRLACQTTVGIPDSRGMVISRSLFDNVVEQNSVIFSLVVMSLLFVFIWMQLVVQQL

Query:  PEWKAPEWGYEKVELSGSSESSESA
        PEWKA EWGYEKVELS SSESSESA
Subjt:  PEWKAPEWGYEKVELSGSSESSESA

XP_022145222.1 photosynthetic NDH subunit of subcomplex B 3, chloroplastic [Momordica charantia]

1.9e-21

53.6

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Query:  SRFLLNCAGGGTCGTCLVE---------------------KPKNWRLACQTTVGIPDSRGMVISRSLFDNVVEQNSVIFSLVVMSLLFVFIWMQLVVQQL
        SRFLLNCAGGGTCGTC+VE                     KPKNWRLACQTTVG PDSRGM                                 LVVQQL
Subjt:  SRFLLNCAGGGTCGTCLVE---------------------KPKNWRLACQTTVGIPDSRGMVISRSLFDNVVEQNSVIFSLVVMSLLFVFIWMQLVVQQL

Query:  PEWKAPEWGYEKVELSGSSESSESA
        PEWKA EWGYEKVELS SSESSESA
Subjt:  PEWKAPEWGYEKVELSGSSESSESA

XP_022964207.1 photosynthetic NDH subunit of subcomplex B 3, chloroplastic [Cucurbita moschata]

2.7e-20

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Query:  SRFLLNCAGGGTCGTCLVE---------------------KPKNWRLACQTTVGIPDSRGMVISRSLFDNVVEQNSVIFSLVVMSLLFVFIWMQLVVQQL
        SRFLLNCAGGGTCGTC+VE                     KPKNWRLACQT VG PDSRGMV                                  VQQL
Subjt:  SRFLLNCAGGGTCGTCLVE---------------------KPKNWRLACQTTVGIPDSRGMVISRSLFDNVVEQNSVIFSLVVMSLLFVFIWMQLVVQQL

Query:  PEWKAPEWGYEKVELSGSSESSESA
        PEWKA EWGYEKVELS SSESSESA
Subjt:  PEWKAPEWGYEKVELSGSSESSESA

XP_038899995.1 photosynthetic NDH subunit of subcomplex B 3, chloroplastic [Benincasa hispida]

1.3e-19

50.82

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Query:  SRFLLNCAGGGTCGTCLVE---------------------KPKNWRLACQTTVGIPDSRGMVISRSLFDNVVEQNSVIFSLVVMSLLFVFIWMQLVVQQL
        SRFLLNCAGGGTCGTC+VE                     KPKNWRLACQTTVG PDSRGM                                 LVVQQL
Subjt:  SRFLLNCAGGGTCGTCLVE---------------------KPKNWRLACQTTVGIPDSRGMVISRSLFDNVVEQNSVIFSLVVMSLLFVFIWMQLVVQQL

Query:  PEWKAPEWGYEKVELSGSSESS
        PEWKA EWGYEKVE+S SSES+
Subjt:  PEWKAPEWGYEKVELSGSSESS

TrEMBL top hits

e value

%identity

Alignment

A0A0A0KC78 2Fe-2S ferredoxin-type domain-containing protein

8.4e-20

50.82

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Query:  SRFLLNCAGGGTCGTCLVE---------------------KPKNWRLACQTTVGIPDSRGMVISRSLFDNVVEQNSVIFSLVVMSLLFVFIWMQLVVQQL
        SRFLLNCAGGGTCGTC+VE                     KPKNWRLACQTTVG PDSRGM                                 LVVQQL
Subjt:  SRFLLNCAGGGTCGTCLVE---------------------KPKNWRLACQTTVGIPDSRGMVISRSLFDNVVEQNSVIFSLVVMSLLFVFIWMQLVVQQL

Query:  PEWKAPEWGYEKVELSGSSESS
        PEWKA EWGYE+VELS SSES+
Subjt:  PEWKAPEWGYEKVELSGSSESS

A0A5A7UW39 Photosynthetic NDH subunit of subcomplex B 3

1.2e-18

49.18

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Query:  SRFLLNCAGGGTCGTCLVE---------------------KPKNWRLACQTTVGIPDSRGMVISRSLFDNVVEQNSVIFSLVVMSLLFVFIWMQLVVQQL
        SRFLLNCAGGGTCGTC+VE                     KPKNWRLACQTTVG PDSRGM                                 LVVQQL
Subjt:  SRFLLNCAGGGTCGTCLVE---------------------KPKNWRLACQTTVGIPDSRGMVISRSLFDNVVEQNSVIFSLVVMSLLFVFIWMQLVVQQL

Query:  PEWKAPEWGYEKVELSGSSESS
        PEWKA EWGYE+V+LS  SES+
Subjt:  PEWKAPEWGYEKVELSGSSESS

A0A6J1CVZ7 photosynthetic NDH subunit of subcomplex B 3, chloroplastic

9.0e-22

53.6

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Query:  SRFLLNCAGGGTCGTCLVE---------------------KPKNWRLACQTTVGIPDSRGMVISRSLFDNVVEQNSVIFSLVVMSLLFVFIWMQLVVQQL
        SRFLLNCAGGGTCGTC+VE                     KPKNWRLACQTTVG PDSRGM                                 LVVQQL
Subjt:  SRFLLNCAGGGTCGTCLVE---------------------KPKNWRLACQTTVGIPDSRGMVISRSLFDNVVEQNSVIFSLVVMSLLFVFIWMQLVVQQL

Query:  PEWKAPEWGYEKVELSGSSESSESA
        PEWKA EWGYEKVELS SSESSESA
Subjt:  PEWKAPEWGYEKVELSGSSESSESA

A0A6J1HH80 photosynthetic NDH subunit of subcomplex B 3, chloroplastic

1.3e-20

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Query:  SRFLLNCAGGGTCGTCLVE---------------------KPKNWRLACQTTVGIPDSRGMVISRSLFDNVVEQNSVIFSLVVMSLLFVFIWMQLVVQQL
        SRFLLNCAGGGTCGTC+VE                     KPKNWRLACQT VG PDSRGMV                                  VQQL
Subjt:  SRFLLNCAGGGTCGTCLVE---------------------KPKNWRLACQTTVGIPDSRGMVISRSLFDNVVEQNSVIFSLVVMSLLFVFIWMQLVVQQL

Query:  PEWKAPEWGYEKVELSGSSESSESA
        PEWKA EWGYEKVELS SSESSESA
Subjt:  PEWKAPEWGYEKVELSGSSESSESA

A0A6J1KDJ1 photosynthetic NDH subunit of subcomplex B 3, chloroplastic

1.3e-20

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Query:  SRFLLNCAGGGTCGTCLVE---------------------KPKNWRLACQTTVGIPDSRGMVISRSLFDNVVEQNSVIFSLVVMSLLFVFIWMQLVVQQL
        SRFLLNCAGGGTCGTC+VE                     KPKNWRLACQT VG PDSRGMV                                  VQQL
Subjt:  SRFLLNCAGGGTCGTCLVE---------------------KPKNWRLACQTTVGIPDSRGMVISRSLFDNVVEQNSVIFSLVVMSLLFVFIWMQLVVQQL

Query:  PEWKAPEWGYEKVELSGSSESSESA
        PEWKA EWGYEKVELS SSESSESA
Subjt:  PEWKAPEWGYEKVELSGSSESSESA

SwissProt top hits

e value

%identity

Alignment

Q9LU21 Photosynthetic NDH subunit of subcomplex B 3, chloroplastic

3.1e-11

38.39

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Query:  SRFLLNCAGGGTCGTCLVE---------------------KPKNWRLACQTTVGIPDSRGMVISRSLFDNVVEQNSVIFSLVVMSLLFVFIWMQLVVQQL
        S+ L NCAG GTC TC+VE                     KPKNWRLACQT VG PDS G+V                                 V+QQL
Subjt:  SRFLLNCAGGGTCGTCLVE---------------------KPKNWRLACQTTVGIPDSRGMVISRSLFDNVVEQNSVIFSLVVMSLLFVFIWMQLVVQQL

Query:  PEWKAPEWGYEK
        PEWKA EW   K
Subjt:  PEWKAPEWGYEK

Arabidopsis top hits

e value

%identity

Alignment

AT3G16250.1 NDH-dependent cyclic electron flow 1

2.2e-12

38.39

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Query:  SRFLLNCAGGGTCGTCLVE---------------------KPKNWRLACQTTVGIPDSRGMVISRSLFDNVVEQNSVIFSLVVMSLLFVFIWMQLVVQQL
        S+ L NCAG GTC TC+VE                     KPKNWRLACQT VG PDS G+V                                 V+QQL
Subjt:  SRFLLNCAGGGTCGTCLVE---------------------KPKNWRLACQTTVGIPDSRGMVISRSLFDNVVEQNSVIFSLVVMSLLFVFIWMQLVVQQL

Query:  PEWKAPEWGYEK
        PEWKA EW   K
Subjt:  PEWKAPEWGYEK

AT4G32590.1 2Fe-2S ferredoxin-like superfamily protein

3.6e-07

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Query:  LLNCAGGGTCGTCLVE---------------------KPKNWRLACQTTVGIPDSRGMVI
        ++NC GGG+CGTC+VE                     KP++WRLACQT VG  ++ G V+
Subjt:  LLNCAGGGTCGTCLVE---------------------KPKNWRLACQTTVGIPDSRGMVI

AT4G32590.3 2Fe-2S ferredoxin-like superfamily protein

1.4e-06

40.35

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Query:  LLNCAGGGTCGTCLVE---------------------KPKNWRLACQTTVGIPDSRG
        ++NC GGG+CGTC+VE                     KP++WRLACQT VG  ++ G
Subjt:  LLNCAGGGTCGTCLVE---------------------KPKNWRLACQTTVGIPDSRG

Sequences

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CDS sequence

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ATGGTTGATTTTGCTTTCGTTAATTCGAGGTTTCTGTTGAACTGTGCGGGTGGAGGAACTTGTGGGACTTGTTTGGTGGAGAAACCAAAAAACTGGAGACTAGCTTGCCA
AACCACTGTTGGGATACCAGATTCCAGAGGGATGGTAATCAGTAGAAGTTTGTTTGATAATGTTGTTGAACAGAACAGCGTTATCTTTTCTCTAGTTGTGATGAGTTTAT
TGTTTGTTTTTATTTGGATGCAGCTTGTTGTTCAACAGTTGCCTGAGTGGAAAGCTCCTGAATGGGGTTATGAAAAAGTAGAGCTTTCTGGATCATCTGAATCTTCAGAA
TCTGCATGA

mRNA sequence

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ACACAAATATGATCCATTTTTCACTCAACACTTCATTTCTTCAATACCCAATTCCCCAAAATGGAGACTCTCTCAATCTTGGCTCATACAGTTGATCATCTTCATCTTTC
TTTCACTCCTTCAACCACATTACAAATTCAACCCATAACCTTAATCGATTTCGGCCCCTAAGTTGTCGCAGAGGCAAAATCAGAGCTGTTGGCACTGACCCACAAGGCCA
ATTCCAAACTAGTGACCATGTTGAGCCTCCCATGGTTGATTTTGCTTTCGTTAATTCGAGGTTTCTGTTGAACTGTGCGGGTGGAGGAACTTGTGGGACTTGTTTGGTGG
AGAAACCAAAAAACTGGAGACTAGCTTGCCAAACCACTGTTGGGATACCAGATTCCAGAGGGATGGTAATCAGTAGAAGTTTGTTTGATAATGTTGTTGAACAGAACAGC
GTTATCTTTTCTCTAGTTGTGATGAGTTTATTGTTTGTTTTTATTTGGATGCAGCTTGTTGTTCAACAGTTGCCTGAGTGGAAAGCTCCTGAATGGGGTTATGAAAAAGT
AGAGCTTTCTGGATCATCTGAATCTTCAGAATCTGCATGAGTTAACTTGTTTTTTGACCCATCAGAGCTGAGTTAGCTGAGAAGATTAAGCTATGGACATTAACTCATCC
ACTTTGGAGCCTACAAAGGGGTGATTGGATTTTGGGATTGAGGAGAGGAGAGAAAGTGGAAGAGGAAGAGAAAGTGAAGTAATTTAATGATACGAAGTACTTGTTTGAAT
ATTGGTGTTTTGGAGGGAAGATGTTGTAAAAGTATTTATTTTATATTATTTTTTTAATGTAAACAATGC

Protein sequence

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MVDFAFVNSRFLLNCAGGGTCGTCLVEKPKNWRLACQTTVGIPDSRGMVISRSLFDNVVEQNSVIFSLVVMSLLFVFIWMQLVVQQLPEWKAPEWGYEKVELSGSSESSE
SA

Sed0027881 (gene) of Chayote v1 genome