CuGenDBv2

Gene ID	Sed0027904
Organism	Sechium edule (Chayote v1)
Description	IGR domain-containing protein
Genome location	LG04:2992654..3005262
RNA-Seq Expression	Sed0027904
Synteny	Sed0027904
Gene Ontology terms	NA
InterPro domains	NA

Homology

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GenBank top hits

e value

%identity

Alignment

KAG6590496.1 hypothetical protein SDJN03_15919, partial [Cucurbita argyrosperma subsp. sororia]

5.8e-52

88.43

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Query:  LMGLLFT---AKRMAWRQIISNHRSILQPYSAPLFARFFSKSIPYVVKVGIPEFLNGVGHGVESHVAKLESEIGDFQKLLVTRTLKLKKLGIPIKHRKLI
        ++ LLF+   A+RMAWRQI SNHRSILQPYS PLFARFFSKSIPYVVKVGIPEFLNGVGHGVESHVAKLESEIGDFQKLLVTRTLKLKKLGIP KHRKLI
Subjt:  LMGLLFT---AKRMAWRQIISNHRSILQPYSAPLFARFFSKSIPYVVKVGIPEFLNGVGHGVESHVAKLESEIGDFQKLLVTRTLKLKKLGIPIKHRKLI

Query:  LKYTHKYRLGLWRPRADLVKA
        LKYTHKYRLGLWRPR+D +KA
Subjt:  LKYTHKYRLGLWRPRADLVKA

KAG7024029.1 hypothetical protein SDJN02_15058 [Cucurbita argyrosperma subsp. argyrosperma]

2.4e-50

94.44

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Query:  MAWRQIISNHRSILQPYSAPLFARFFSKSIPYVVKVGIPEFLNGVGHGVESHVAKLESEIGDFQKLLVTRTLKLKKLGIPIKHRKLILKYTHKYRLGLWR
        MAWRQI SNHRSILQPYS PLFARFFSKSIPYVVKVGIPEFLNGVGHGVESHVAKLESEIGDFQKLLVTRTLKLKKLGIP KHRKLILKYTHKYRLGLWR
Subjt:  MAWRQIISNHRSILQPYSAPLFARFFSKSIPYVVKVGIPEFLNGVGHGVESHVAKLESEIGDFQKLLVTRTLKLKKLGIPIKHRKLILKYTHKYRLGLWR

Query:  PRADLVKA
        PR+D +KA
Subjt:  PRADLVKA

XP_022961412.1 uncharacterized protein LOC111461991 [Cucurbita moschata]

1.9e-50

95.37

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Query:  MAWRQIISNHRSILQPYSAPLFARFFSKSIPYVVKVGIPEFLNGVGHGVESHVAKLESEIGDFQKLLVTRTLKLKKLGIPIKHRKLILKYTHKYRLGLWR
        MAWRQIISNHRS LQPYSAPLFARFFSKSIPYVVKVGIPEFLNGVGHGVESHVAKLESEIGDFQKLLVTRTLKLKKLGIP KHRKLILKYTHKYRLGLWR
Subjt:  MAWRQIISNHRSILQPYSAPLFARFFSKSIPYVVKVGIPEFLNGVGHGVESHVAKLESEIGDFQKLLVTRTLKLKKLGIPIKHRKLILKYTHKYRLGLWR

Query:  PRADLVKA
        PR+D +KA
Subjt:  PRADLVKA

XP_022968823.1 uncharacterized protein LOC111467943 [Cucurbita maxima]

3.2e-50

95.33

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Query:  MAWRQIISNHRSILQPYSAPLFARFFSKSIPYVVKVGIPEFLNGVGHGVESHVAKLESEIGDFQKLLVTRTLKLKKLGIPIKHRKLILKYTHKYRLGLWR
        MAWRQIISNHRSILQPYSAPLFARFFSKS PYVVKVGIPEFLNGVGHGVESHVAKLESEIGDFQKLLVTRTLKLKKLGIP KHRKLILKYTHKYRLGLWR
Subjt:  MAWRQIISNHRSILQPYSAPLFARFFSKSIPYVVKVGIPEFLNGVGHGVESHVAKLESEIGDFQKLLVTRTLKLKKLGIPIKHRKLILKYTHKYRLGLWR

Query:  PRADLVK
        PR+D +K
Subjt:  PRADLVK

XP_023516779.1 uncharacterized protein LOC111780577 [Cucurbita pepo subsp. pepo]

2.9e-51

96.3

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Query:  MAWRQIISNHRSILQPYSAPLFARFFSKSIPYVVKVGIPEFLNGVGHGVESHVAKLESEIGDFQKLLVTRTLKLKKLGIPIKHRKLILKYTHKYRLGLWR
        MAWRQIISNHRSILQPYSAPLFARFFSKSIPYVVKVGIPEFLNGVGHGVESHVAKLESEIGDFQKLLVTRTLKLKKLGIP KHRKLILKYTHKYRLGLWR
Subjt:  MAWRQIISNHRSILQPYSAPLFARFFSKSIPYVVKVGIPEFLNGVGHGVESHVAKLESEIGDFQKLLVTRTLKLKKLGIPIKHRKLILKYTHKYRLGLWR

Query:  PRADLVKA
        PR+D +KA
Subjt:  PRADLVKA

TrEMBL top hits

e value

%identity

Alignment

A0A0A0M1A4 IGR domain-containing protein

8.5e-49

90.74

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Query:  MAWRQIISNHRSILQPYSAPLFARFFSKSIPYVVKVGIPEFLNGVGHGVESHVAKLESEIGDFQKLLVTRTLKLKKLGIPIKHRKLILKYTHKYRLGLWR
        MAWR I+SNHRSILQPYSAPLFARFFSKS PY+VKVGIPEFL G+GHGVESHVAKLESEIGDFQKLLVTRTLKLKKLGIP KHRKLILKYTHKYRLGLWR
Subjt:  MAWRQIISNHRSILQPYSAPLFARFFSKSIPYVVKVGIPEFLNGVGHGVESHVAKLESEIGDFQKLLVTRTLKLKKLGIPIKHRKLILKYTHKYRLGLWR

Query:  PRADLVKA
        PR D +KA
Subjt:  PRADLVKA

A0A1S3BPD9 uncharacterized protein LOC103492108

5.5e-48

89.81

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Query:  MAWRQIISNHRSILQPYSAPLFARFFSKSIPYVVKVGIPEFLNGVGHGVESHVAKLESEIGDFQKLLVTRTLKLKKLGIPIKHRKLILKYTHKYRLGLWR
        MAW+ IISNHRSILQPYSA LFARFFSKS PY+VKVGIPEFLNG+GHGVESHVAKLESEIGDFQKLLVTRTLKLKKLGIP KHRKLILKYTHKYRLGLWR
Subjt:  MAWRQIISNHRSILQPYSAPLFARFFSKSIPYVVKVGIPEFLNGVGHGVESHVAKLESEIGDFQKLLVTRTLKLKKLGIPIKHRKLILKYTHKYRLGLWR

Query:  PRADLVKA
        PR D +K+
Subjt:  PRADLVKA

A0A6J1DML5 uncharacterized protein LOC111021823

1.1e-48

92.59

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Query:  MAWRQIISNHRSILQPYSAPLFARFFSKSIPYVVKVGIPEFLNGVGHGVESHVAKLESEIGDFQKLLVTRTLKLKKLGIPIKHRKLILKYTHKYRLGLWR
        MAWRQI SN+RSILQPYSAPLFARFFSKS PYVVKVGIPEFLNGVGHGVESHV KLESEIGDFQKLLVTRTLKLKKLGIP KHRKLILKY HKYRLGLWR
Subjt:  MAWRQIISNHRSILQPYSAPLFARFFSKSIPYVVKVGIPEFLNGVGHGVESHVAKLESEIGDFQKLLVTRTLKLKKLGIPIKHRKLILKYTHKYRLGLWR

Query:  PRADLVKA
        PRAD +KA
Subjt:  PRADLVKA

A0A6J1HA49 uncharacterized protein LOC111461991

9.0e-51

95.37

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Query:  MAWRQIISNHRSILQPYSAPLFARFFSKSIPYVVKVGIPEFLNGVGHGVESHVAKLESEIGDFQKLLVTRTLKLKKLGIPIKHRKLILKYTHKYRLGLWR
        MAWRQIISNHRS LQPYSAPLFARFFSKSIPYVVKVGIPEFLNGVGHGVESHVAKLESEIGDFQKLLVTRTLKLKKLGIP KHRKLILKYTHKYRLGLWR
Subjt:  MAWRQIISNHRSILQPYSAPLFARFFSKSIPYVVKVGIPEFLNGVGHGVESHVAKLESEIGDFQKLLVTRTLKLKKLGIPIKHRKLILKYTHKYRLGLWR

Query:  PRADLVKA
        PR+D +KA
Subjt:  PRADLVKA

A0A6J1HZ75 uncharacterized protein LOC111467943

1.5e-50

95.33

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Query:  MAWRQIISNHRSILQPYSAPLFARFFSKSIPYVVKVGIPEFLNGVGHGVESHVAKLESEIGDFQKLLVTRTLKLKKLGIPIKHRKLILKYTHKYRLGLWR
        MAWRQIISNHRSILQPYSAPLFARFFSKS PYVVKVGIPEFLNGVGHGVESHVAKLESEIGDFQKLLVTRTLKLKKLGIP KHRKLILKYTHKYRLGLWR
Subjt:  MAWRQIISNHRSILQPYSAPLFARFFSKSIPYVVKVGIPEFLNGVGHGVESHVAKLESEIGDFQKLLVTRTLKLKKLGIPIKHRKLILKYTHKYRLGLWR

Query:  PRADLVK
        PR+D +K
Subjt:  PRADLVK

SwissProt top hits	e value	%identity	Alignment
No hits found

Arabidopsis top hits

e value

%identity

Alignment

AT3G05810.1 FUNCTIONS IN: molecular_function unknown

4.2e-32

63.39

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Query:  MAWRQIISNHRSIL---QPYSAPLFARFF-SKSIPYVVKVGIPEFLNGVGHGVESHVAKLESEIGDFQKLLVTRTLKLKKLGIPIKHRKLILKYTHKYRL
        MAW ++I + R+ L   Q  S     RF  SK   Y VKVGIPEFL G+G G E+H+AK+E+EIGD  KLLVTRTL+LKKLGIP KHRKLILKY  KYRL
Subjt:  MAWRQIISNHRSIL---QPYSAPLFARFF-SKSIPYVVKVGIPEFLNGVGHGVESHVAKLESEIGDFQKLLVTRTLKLKKLGIPIKHRKLILKYTHKYRL

Query:  GLWRPRADLVKA
        GLW+PRAD +KA
Subjt:  GLWRPRADLVKA

AT5G26800.1 FUNCTIONS IN: molecular_function unknown

1.6e-36

68.75

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Query:  MAWRQIISNHRSIL--QPYSAPL-FARFFSKS-IPYVVKVGIPEFLNGVGHGVESHVAKLESEIGDFQKLLVTRTLKLKKLGIPIKHRKLILKYTHKYRL
        MAW ++I + RS+L   P S+ L F RF+SKS  PY VKVGIPEFL+G+G GVE+H+AKLE+E+GD  KLLVTRTL+LKK GIP KHRKLILKY+HKYRL
Subjt:  MAWRQIISNHRSIL--QPYSAPL-FARFFSKS-IPYVVKVGIPEFLNGVGHGVESHVAKLESEIGDFQKLLVTRTLKLKKLGIPIKHRKLILKYTHKYRL

Query:  GLWRPRADLVKA
        GLW+PRAD +KA
Subjt:  GLWRPRADLVKA

Sequences

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CDS sequence

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mRNA sequence

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ATGCCCAAGAGTGCATTGTGGACATACATCGACTTGTCACTACCGTGCTTCGTCATCGCCAAAGCCCTACATGAAAGAGCCTTCAAAGGCCTTGCAAGCTTGAGAAATCC
ACCGTCTTCTGCTGCAATCTCTCGCTGCCGCGCCATCCACCGTCGTCTACCACAGTCGCTTCAAATCTCATTCGATCGCCGTCGAGATGATTTGAGACTCATGGGTTTGT
TGTTCACAGCAAAAAGGATGGCGTGGAGGCAGATTATCTCCAACCATAGGTCTATACTGCAACCATACTCGGCTCCTCTATTTGCTAGATTCTTTTCTAAATCTATCCCG
TATGTCGTAAAGGTCGGAATACCAGAATTTTTAAATGGTGTTGGGCATGGGGTTGAGTCACATGTGGCTAAACTTGAGTCAGAGATTGGTGACTTCCAGAAGCTGCTTGT
TACTCGCACGCTTAAGCTGAAAAAACTTGGAATACCTATCAAACATAGGAAGCTGATATTGAAGTACACTCACAAGTACAGGCTTGGACTATGGAGGCCCCGAGCTGATC
TTGTGAAGGCCTGATGGTTTTTCCTAGGTTTACGAGGTGAATGGAATCGTTTACTGATCCTGGACCTTAGTTTGTAAAACTTTCGAGGATAGTTTTCGTTTACTAAATCT
AAAGCATATCCTCATTTTACTGCTTTTTAATTGTTTCTATTCATTCACCAACTATATACTTATTCAGTTCATTTAAGACCTTGCATGAAGCTCAAATTTAATCAAAGTGC
AAGTTCCAATTTATATCATGCTGCATGACAGGACACAAAGGATTCTGGTAAGTAGGGGTCTGCTCTCTCCAGAAATAATGCTTTATAGATTCAGTCAAAACCATAACACC
AAGCCTTTCTGTAGGAGTTACATATTCAGAGAACTAGAAGCAATGGGCCTATAATAGATAAAGTTTGTGAACCCATTAAAAAACTCAACCTAGGACCAGTCACTTTTTTT
GATATCTCTAGTGTCTAGGCTTGCTTACGGGCACATCAATTATTCTCAAGGGATAAATTGACCAACCCTACAATTTTTTTTCTTCTTCTAAAACCGGGTAATTAAAGTTT
CGCTCCATTATACCTGAGGTAATTGGCTAGGCACCGACAGACATTGAAGGAATGGAAACATGGGAGGTGTCTAAAAATTAATGTGACAACTAAGTCTCGAACTTGAGACC
TTTAGAAGAGCACACCTTCAAAACTCAAGTCTTCGATCACTGAGCCACCCTTTGAGAACAACCGACCCTACAATATTTGTCTGTAAGTAAATTTGTAAAAGAAATTAATT
CTTAGTAAGATGAGTACTATGGATTAGACCCATAACCTTAAGCACATCGGTTTAAGAATCTTTTGCTCGTATATGAAACAGTGAAAAAGAAGAAGGGCCTACTATTGATA
GTGGTCATTTTCCTTGTCACAGCAAAGCCACGTGTGAGGCAATGA

Protein sequence

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MPKSALWTYIDLSLPCFVIAKALHERAFKGLASLRNPPSSAAISRCRAIHRRLPQSLQISFDRRRDDLRLMGLLFTAKRMAWRQIISNHRSILQPYSAPLFARFFSKSIP
YVVKVGIPEFLNGVGHGVESHVAKLESEIGDFQKLLVTRTLKLKKLGIPIKHRKLILKYTHKYRLGLWRPRADLVKA

Sed0027904 (gene) of Chayote v1 genome