; ; ; ; ; ; ; ; ; ; ; ; ; ; ; ; ; ; ; CuGenDBv2

Sed0027906 (gene) of Chayote v1 genome

Gene IDSed0027906
OrganismSechium edule (Chayote v1)
DescriptionDNA-directed RNA polymerase II subunit 1-like
Genome locationLG12:420738..421655
RNA-Seq ExpressionSed0027906
SyntenySed0027906
Gene Ontology termsNA
InterPro domainsNA


Homology Show/hide homology
GenBank top hitse value%identityAlignment
KAA0048864.1 WW domain-binding protein 11-like [Cucumis melo var. makuwa]2.7e-5450.54Show/hide
Query:  MANLPRFGRAWQRTTAGARPVPATAQAASEPEPEILPLAPTTQSLQL-EPNPPPV----------------------------ATII--------RLTSS
        MANLPR+GR WQR ++  R  PA A++  EPEPEILPLAPT Q+LQL EP PPPV                            AT+I           S 
Subjt:  MANLPRFGRAWQRTTAGARPVPATAQAASEPEPEILPLAPTTQSLQL-EPNPPPV----------------------------ATII--------RLTSS

Query:  PVSPSRKSFNRKHSISPNSYQKSVKPTTPPLSPLALPKSANVNTIKSIIQPEVERIADLYKKP---------AKPERRTAEAINLSGHNVGVIMEVKQSS
        PVSP RKS   ++SISPNSYQ+ +KPTTP LS L LPKS++V TI S I+PEVE+     KK            P    A+AINL+G N+G +M++ Q S
Subjt:  PVSPSRKSFNRKHSISPNSYQKSVKPTTPPLSPLALPKSANVNTIKSIIQPEVERIADLYKKP---------AKPERRTAEAINLSGHNVGVIMEVKQSS

Query:  DQISGGEVIKKIESETGSRHGNDDAK----TGFPMTQFMNNNFQEVNNSIVFNSSCSGRDPGLHLDFSGKTKDDGAIVD
        D+ SGGEV +KIE+ETG +  ND+ K    T FPMT   N+NFQEVNNS+V+NSSC+ RDPGLHLDFSGK KD+ A V+
Subjt:  DQISGGEVIKKIESETGSRHGNDDAK----TGFPMTQFMNNNFQEVNNSIVFNSSCSGRDPGLHLDFSGKTKDDGAIVD

XP_008437853.1 PREDICTED: WW domain-binding protein 11-like [Cucumis melo]1.4e-3949.33Show/hide
Query:  PATAQAASEPEPEILPLA--PTTQSLQLEPNPPPVATIIRLTSSPVSPSRKSFNRKHSISPNSYQKSVKPTTPPLSPLALPKSANVNTIKSIIQPEVERI
        P++      P P I P A  P  ++  +    PP+       S PVSP RKS   ++SISPNSYQ+ +KPTTP LS L LPKS++V TI S I+PEVE+ 
Subjt:  PATAQAASEPEPEILPLA--PTTQSLQLEPNPPPVATIIRLTSSPVSPSRKSFNRKHSISPNSYQKSVKPTTPPLSPLALPKSANVNTIKSIIQPEVERI

Query:  ADLYKKP---------AKPERRTAEAINLSGHNVGVIMEVKQSSDQISGGEVIKKIESETGSRHGNDDAK----TGFPMTQFMNNNFQEVNNSIVFNSSC
            KK            P    A+AINL+G N+G +M++ Q SD+ SGGEV +KIE+ETG +  ND+ K    T FPMT   N+NFQEVNNS+V+NSSC
Subjt:  ADLYKKP---------AKPERRTAEAINLSGHNVGVIMEVKQSSDQISGGEVIKKIESETGSRHGNDDAK----TGFPMTQFMNNNFQEVNNSIVFNSSC

Query:  SGRDPGLHLDFSGKTKDDGAIVD
        + RDPGLHLDFSGK KD+ A V+
Subjt:  SGRDPGLHLDFSGKTKDDGAIVD

XP_011650663.1 gibberellin-regulated protein 14 [Cucumis sativus]4.0e-5851.24Show/hide
Query:  MANLPRFGRAWQRTTAGARPVPATAQAASEPEPEILPLAPTTQSLQ-LEPNPPPV-------------------------ATIIR--------LTSSPVS
        MANLPR+GR W+ +T  +R  P   Q+  EPEPEILPLAPT Q+LQ  EP PP                           AT+IR          S PVS
Subjt:  MANLPRFGRAWQRTTAGARPVPATAQAASEPEPEILPLAPTTQSLQ-LEPNPPPV-------------------------ATIIR--------LTSSPVS

Query:  PSRKSFNRKHSISPNSYQKSVKPTTPPLSPLALPKSANVNTIKSIIQPEVERIADLYKKPAK---------PERRTAEAINLSGHNVGVIMEVKQSSDQI
        P RKS + +HSISPNSYQ+ +KPT P LS LALPKSA+V T+ S I+PEVE+  D +KK  +         P    A+AINL+G N+G +M++ Q SD+I
Subjt:  PSRKSFNRKHSISPNSYQKSVKPTTPPLSPLALPKSANVNTIKSIIQPEVERIADLYKKPAK---------PERRTAEAINLSGHNVGVIMEVKQSSDQI

Query:  SGGEVIKKIESETGSRHGNDDAK----TGFPMTQFMNNNFQEVNNSIVFNSSCSGRDPGLHLDFSGKTKDDGAIVDGGEKSKY
        SGGEV +KIE++TG +  ND  K    T FPMT   N+NFQEVNNS+++NSSCSGRDPGLHLDFSG+ KD+ A VDG +KSKY
Subjt:  SGGEVIKKIESETGSRHGNDDAK----TGFPMTQFMNNNFQEVNNSIVFNSSCSGRDPGLHLDFSGKTKDDGAIVDGGEKSKY

XP_022147458.1 vegetative cell wall protein gp1-like [Momordica charantia]8.3e-4045.17Show/hide
Query:  MANLPRFGRAWQRTTAGARPVPATAQAASEPEPEILPLAPTTQSLQ-LEPNPPPVAT------------------------IIRLTSS--------PVSP
        MANLPRFGR WQR    A P PA           + P  PTTQ+LQ  EPN PP A+                          R+ SS        P SP
Subjt:  MANLPRFGRAWQRTTAGARPVPATAQAASEPEPEILPLAPTTQSLQ-LEPNPPPVAT------------------------IIRLTSS--------PVSP

Query:  SRKSFNRKH--SISPNSYQKSVKPTTPPLSPLALPKSANVNTIKSIIQPEVERIADLY----KKPAKPERRT---------AEAINLSGHNVGVIMEVKQ
        + K  +R H  +  P S  KS +  TPPLSPLALP++AN   + S + PEVE+ + LY    +KPAK  R +         AE INL+GHNVG +ME+ Q
Subjt:  SRKSFNRKH--SISPNSYQKSVKPTTPPLSPLALPKSANVNTIKSIIQPEVERIADLY----KKPAKPERRT---------AEAINLSGHNVGVIMEVKQ

Query:  SSDQISGGEVIKKIESET---GSRHGNDDAKTG----FPMTQFMNNNFQEVNNSIVFNSSCSGRDPGLHLDFSGKTK-DDGAIVDGGEKS
        SS + S GE+IKK ESET   G+ HGND+ KTG     P T FMN+NFQ VNNS++++SSCS RDPGLHL FS       GAIVDG  K+
Subjt:  SSDQISGGEVIKKIESET---GSRHGNDDAKTG----FPMTQFMNNNFQEVNNSIVFNSSCSGRDPGLHLDFSGKTK-DDGAIVDGGEKS

XP_022974816.1 wiskott-Aldrich syndrome protein family member 2-like [Cucurbita maxima]7.5e-3339.93Show/hide
Query:  MANLPRFGRAWQRTTAGARPVPATAQAASEPEPEILPLAPTTQSLQ-------------------LEPNPPPVATIIRLTSSPVSPSRKSFNRKHSISP-
        M+N PRFGR  QR +  A PV  T   A+E +PE LP   T+Q+LQ                   L P+PPP    +   S PVSP++K  +R    SP 
Subjt:  MANLPRFGRAWQRTTAGARPVPATAQAASEPEPEILPLAPTTQSLQ-------------------LEPNPPPVATIIRLTSSPVSPSRKSFNRKHSISP-

Query:  NSYQKSVKPTTPPLSPLALP----KSANVNTIKSIIQPEVERIADLY----KKPAKPER-------------RTAEAINLSGHNVGVIMEV-KQSSDQIS
         S  +S++ + PP  PLALP     + + NT +  IQ EVE+ + +Y    +KP K +R             +TAE+INL+GHNVG +ME+ K S+    
Subjt:  NSYQKSVKPTTPPLSPLALP----KSANVNTIKSIIQPEVERIADLY----KKPAKPER-------------RTAEAINLSGHNVGVIMEV-KQSSDQIS

Query:  GGEVIKKIESE--TGSRHGN---------DDAKTGFPMTQFMNNNFQEVNNSIVFNSSCSGRDPGLHLDFSGKTKDDGAIVDGGEKSK
        GGE ++K ++E   G R GN         D  K   PMT FMN+NFQ VNNS++++SSC+ RDPGLHL F+     DGA VDG +  K
Subjt:  GGEVIKKIESE--TGSRHGN---------DDAKTGFPMTQFMNNNFQEVNNSIVFNSSCSGRDPGLHLDFSGKTKDDGAIVDGGEKSK

TrEMBL top hitse value%identityAlignment
A0A0A0L8G8 Uncharacterized protein1.9e-5851.24Show/hide
Query:  MANLPRFGRAWQRTTAGARPVPATAQAASEPEPEILPLAPTTQSLQ-LEPNPPPV-------------------------ATIIR--------LTSSPVS
        MANLPR+GR W+ +T  +R  P   Q+  EPEPEILPLAPT Q+LQ  EP PP                           AT+IR          S PVS
Subjt:  MANLPRFGRAWQRTTAGARPVPATAQAASEPEPEILPLAPTTQSLQ-LEPNPPPV-------------------------ATIIR--------LTSSPVS

Query:  PSRKSFNRKHSISPNSYQKSVKPTTPPLSPLALPKSANVNTIKSIIQPEVERIADLYKKPAK---------PERRTAEAINLSGHNVGVIMEVKQSSDQI
        P RKS + +HSISPNSYQ+ +KPT P LS LALPKSA+V T+ S I+PEVE+  D +KK  +         P    A+AINL+G N+G +M++ Q SD+I
Subjt:  PSRKSFNRKHSISPNSYQKSVKPTTPPLSPLALPKSANVNTIKSIIQPEVERIADLYKKPAK---------PERRTAEAINLSGHNVGVIMEVKQSSDQI

Query:  SGGEVIKKIESETGSRHGNDDAK----TGFPMTQFMNNNFQEVNNSIVFNSSCSGRDPGLHLDFSGKTKDDGAIVDGGEKSKY
        SGGEV +KIE++TG +  ND  K    T FPMT   N+NFQEVNNS+++NSSCSGRDPGLHLDFSG+ KD+ A VDG +KSKY
Subjt:  SGGEVIKKIESETGSRHGNDDAK----TGFPMTQFMNNNFQEVNNSIVFNSSCSGRDPGLHLDFSGKTKDDGAIVDGGEKSKY

A0A1S3AVL7 WW domain-binding protein 11-like6.9e-4049.33Show/hide
Query:  PATAQAASEPEPEILPLA--PTTQSLQLEPNPPPVATIIRLTSSPVSPSRKSFNRKHSISPNSYQKSVKPTTPPLSPLALPKSANVNTIKSIIQPEVERI
        P++      P P I P A  P  ++  +    PP+       S PVSP RKS   ++SISPNSYQ+ +KPTTP LS L LPKS++V TI S I+PEVE+ 
Subjt:  PATAQAASEPEPEILPLA--PTTQSLQLEPNPPPVATIIRLTSSPVSPSRKSFNRKHSISPNSYQKSVKPTTPPLSPLALPKSANVNTIKSIIQPEVERI

Query:  ADLYKKP---------AKPERRTAEAINLSGHNVGVIMEVKQSSDQISGGEVIKKIESETGSRHGNDDAK----TGFPMTQFMNNNFQEVNNSIVFNSSC
            KK            P    A+AINL+G N+G +M++ Q SD+ SGGEV +KIE+ETG +  ND+ K    T FPMT   N+NFQEVNNS+V+NSSC
Subjt:  ADLYKKP---------AKPERRTAEAINLSGHNVGVIMEVKQSSDQISGGEVIKKIESETGSRHGNDDAK----TGFPMTQFMNNNFQEVNNSIVFNSSC

Query:  SGRDPGLHLDFSGKTKDDGAIVD
        + RDPGLHLDFSGK KD+ A V+
Subjt:  SGRDPGLHLDFSGKTKDDGAIVD

A0A5D3DB96 WW domain-binding protein 11-like1.3e-5450.54Show/hide
Query:  MANLPRFGRAWQRTTAGARPVPATAQAASEPEPEILPLAPTTQSLQL-EPNPPPV----------------------------ATII--------RLTSS
        MANLPR+GR WQR ++  R  PA A++  EPEPEILPLAPT Q+LQL EP PPPV                            AT+I           S 
Subjt:  MANLPRFGRAWQRTTAGARPVPATAQAASEPEPEILPLAPTTQSLQL-EPNPPPV----------------------------ATII--------RLTSS

Query:  PVSPSRKSFNRKHSISPNSYQKSVKPTTPPLSPLALPKSANVNTIKSIIQPEVERIADLYKKP---------AKPERRTAEAINLSGHNVGVIMEVKQSS
        PVSP RKS   ++SISPNSYQ+ +KPTTP LS L LPKS++V TI S I+PEVE+     KK            P    A+AINL+G N+G +M++ Q S
Subjt:  PVSPSRKSFNRKHSISPNSYQKSVKPTTPPLSPLALPKSANVNTIKSIIQPEVERIADLYKKP---------AKPERRTAEAINLSGHNVGVIMEVKQSS

Query:  DQISGGEVIKKIESETGSRHGNDDAK----TGFPMTQFMNNNFQEVNNSIVFNSSCSGRDPGLHLDFSGKTKDDGAIVD
        D+ SGGEV +KIE+ETG +  ND+ K    T FPMT   N+NFQEVNNS+V+NSSC+ RDPGLHLDFSGK KD+ A V+
Subjt:  DQISGGEVIKKIESETGSRHGNDDAK----TGFPMTQFMNNNFQEVNNSIVFNSSCSGRDPGLHLDFSGKTKDDGAIVD

A0A6J1D1D2 vegetative cell wall protein gp1-like4.0e-4045.17Show/hide
Query:  MANLPRFGRAWQRTTAGARPVPATAQAASEPEPEILPLAPTTQSLQ-LEPNPPPVAT------------------------IIRLTSS--------PVSP
        MANLPRFGR WQR    A P PA           + P  PTTQ+LQ  EPN PP A+                          R+ SS        P SP
Subjt:  MANLPRFGRAWQRTTAGARPVPATAQAASEPEPEILPLAPTTQSLQ-LEPNPPPVAT------------------------IIRLTSS--------PVSP

Query:  SRKSFNRKH--SISPNSYQKSVKPTTPPLSPLALPKSANVNTIKSIIQPEVERIADLY----KKPAKPERRT---------AEAINLSGHNVGVIMEVKQ
        + K  +R H  +  P S  KS +  TPPLSPLALP++AN   + S + PEVE+ + LY    +KPAK  R +         AE INL+GHNVG +ME+ Q
Subjt:  SRKSFNRKH--SISPNSYQKSVKPTTPPLSPLALPKSANVNTIKSIIQPEVERIADLY----KKPAKPERRT---------AEAINLSGHNVGVIMEVKQ

Query:  SSDQISGGEVIKKIESET---GSRHGNDDAKTG----FPMTQFMNNNFQEVNNSIVFNSSCSGRDPGLHLDFSGKTK-DDGAIVDGGEKS
        SS + S GE+IKK ESET   G+ HGND+ KTG     P T FMN+NFQ VNNS++++SSCS RDPGLHL FS       GAIVDG  K+
Subjt:  SSDQISGGEVIKKIESET---GSRHGNDDAKTG----FPMTQFMNNNFQEVNNSIVFNSSCSGRDPGLHLDFSGKTK-DDGAIVDGGEKS

A0A6J1ICG8 wiskott-Aldrich syndrome protein family member 2-like3.7e-3339.93Show/hide
Query:  MANLPRFGRAWQRTTAGARPVPATAQAASEPEPEILPLAPTTQSLQ-------------------LEPNPPPVATIIRLTSSPVSPSRKSFNRKHSISP-
        M+N PRFGR  QR +  A PV  T   A+E +PE LP   T+Q+LQ                   L P+PPP    +   S PVSP++K  +R    SP 
Subjt:  MANLPRFGRAWQRTTAGARPVPATAQAASEPEPEILPLAPTTQSLQ-------------------LEPNPPPVATIIRLTSSPVSPSRKSFNRKHSISP-

Query:  NSYQKSVKPTTPPLSPLALP----KSANVNTIKSIIQPEVERIADLY----KKPAKPER-------------RTAEAINLSGHNVGVIMEV-KQSSDQIS
         S  +S++ + PP  PLALP     + + NT +  IQ EVE+ + +Y    +KP K +R             +TAE+INL+GHNVG +ME+ K S+    
Subjt:  NSYQKSVKPTTPPLSPLALP----KSANVNTIKSIIQPEVERIADLY----KKPAKPER-------------RTAEAINLSGHNVGVIMEV-KQSSDQIS

Query:  GGEVIKKIESE--TGSRHGN---------DDAKTGFPMTQFMNNNFQEVNNSIVFNSSCSGRDPGLHLDFSGKTKDDGAIVDGGEKSK
        GGE ++K ++E   G R GN         D  K   PMT FMN+NFQ VNNS++++SSC+ RDPGLHL F+     DGA VDG +  K
Subjt:  GGEVIKKIESE--TGSRHGN---------DDAKTGFPMTQFMNNNFQEVNNSIVFNSSCSGRDPGLHLDFSGKTKDDGAIVDGGEKSK

SwissProt top hitse value%identityAlignment
No hits found
Arabidopsis top hitse value%identityAlignment
AT1G63310.1 unknown protein6.4e-0634.94Show/hide
Query:  INLSGHNVGVIMEVKQSSDQISGGEVIKKIESETGSRHGNDDAKTGFPMTQFMNNNFQEVNNSIVFNSSCSGRDPGLHLDFSG
        I LSG N+G  M+               ++++  G R  N D +  F ++ ++N+NFQ VNNSI+  +     DPG+HLD SG
Subjt:  INLSGHNVGVIMEVKQSSDQISGGEVIKKIESETGSRHGNDDAKTGFPMTQFMNNNFQEVNNSIVFNSSCSGRDPGLHLDFSG

AT2G46630.1 unknown protein1.2e-0728.08Show/hide
Query:  LYKKPAKPERR---TAEAINLSGHNVGVIMEVKQS------------SDQIS--GGEVIKKIESETGSRHGNDDAK------------TGFPMTQFMNNN
        ++++P+  +     +   I ++G N G +ME+ +S            S ++S   GE  ++++S + S     + K            +  PM  FMN+N
Subjt:  LYKKPAKPERR---TAEAINLSGHNVGVIMEVKQS------------SDQIS--GGEVIKKIESETGSRHGNDDAK------------TGFPMTQFMNNN

Query:  FQEVNNSIVFNSSCSGRDPGLHLDFSGKTKDDGA--IVDGGEKSKY
         Q +NNSIV+NS+ S  DPG+HL  S K   D    + D G    Y
Subjt:  FQEVNNSIVFNSSCSGRDPGLHLDFSGKTKDDGA--IVDGGEKSKY


Sequences Show/hide sequences
CDS sequenceShow/hide CDS sequence
ATGTTTGTGTTTATGTTCTTTTACCATGATTGGTTTCTTGTTTCCATTCATTTAGAATCTCTTCACCTTCTCTTTGAATTCTTCATCATATTCAACCTTACGCTTTCTCT
TTCAAATCCCCATTGGTTTAAAGTTCCAATTATAAATAATTGCTTCCATTATCACTGTCATCTCATTCTCTGTGTTTTCAAATTTCTGTTATTCATAATGGCTAATCTTC
CTCGCTTTGGTCGGGCATGGCAGCGTACTACAGCAGGCGCCCGCCCTGTTCCGGCCACCGCACAGGCCGCCTCAGAACCAGAGCCTGAGATTCTGCCATTAGCTCCGACC
ACCCAATCTCTACAACTCGAGCCCAACCCGCCACCGGTGGCTACCATCATACGTCTGACTAGCTCGCCGGTCTCCCCTTCACGCAAATCTTTCAACCGGAAACATTCAAT
TAGCCCTAATTCATATCAGAAATCCGTTAAACCAACTACTCCCCCACTTTCCCCTCTGGCATTGCCCAAATCTGCAAATGTGAACACGATCAAATCCATAATCCAGCCGG
AGGTGGAGCGGATAGCCGATCTGTACAAGAAGCCGGCGAAGCCTGAACGGCGGACGGCGGAGGCTATAAACCTCAGCGGACATAACGTAGGTGTGATCATGGAAGTAAAG
CAATCATCCGATCAAATTTCAGGCGGAGAGGTGATTAAGAAGATCGAATCAGAAACCGGCAGCCGCCATGGAAACGACGACGCGAAAACCGGATTTCCGATGACGCAATT
CATGAACAACAATTTTCAAGAAGTGAACAATTCCATTGTGTTTAATTCGTCGTGCAGTGGCCGTGATCCGGGCCTGCATCTCGATTTCTCCGGCAAGACGAAGGATGATG
GAGCCATTGTCGACGGCGGCGAGAAATCTAAGTATTGA
mRNA sequenceShow/hide mRNA sequence
ATGTTTGTGTTTATGTTCTTTTACCATGATTGGTTTCTTGTTTCCATTCATTTAGAATCTCTTCACCTTCTCTTTGAATTCTTCATCATATTCAACCTTACGCTTTCTCT
TTCAAATCCCCATTGGTTTAAAGTTCCAATTATAAATAATTGCTTCCATTATCACTGTCATCTCATTCTCTGTGTTTTCAAATTTCTGTTATTCATAATGGCTAATCTTC
CTCGCTTTGGTCGGGCATGGCAGCGTACTACAGCAGGCGCCCGCCCTGTTCCGGCCACCGCACAGGCCGCCTCAGAACCAGAGCCTGAGATTCTGCCATTAGCTCCGACC
ACCCAATCTCTACAACTCGAGCCCAACCCGCCACCGGTGGCTACCATCATACGTCTGACTAGCTCGCCGGTCTCCCCTTCACGCAAATCTTTCAACCGGAAACATTCAAT
TAGCCCTAATTCATATCAGAAATCCGTTAAACCAACTACTCCCCCACTTTCCCCTCTGGCATTGCCCAAATCTGCAAATGTGAACACGATCAAATCCATAATCCAGCCGG
AGGTGGAGCGGATAGCCGATCTGTACAAGAAGCCGGCGAAGCCTGAACGGCGGACGGCGGAGGCTATAAACCTCAGCGGACATAACGTAGGTGTGATCATGGAAGTAAAG
CAATCATCCGATCAAATTTCAGGCGGAGAGGTGATTAAGAAGATCGAATCAGAAACCGGCAGCCGCCATGGAAACGACGACGCGAAAACCGGATTTCCGATGACGCAATT
CATGAACAACAATTTTCAAGAAGTGAACAATTCCATTGTGTTTAATTCGTCGTGCAGTGGCCGTGATCCGGGCCTGCATCTCGATTTCTCCGGCAAGACGAAGGATGATG
GAGCCATTGTCGACGGCGGCGAGAAATCTAAGTATTGA
Protein sequenceShow/hide protein sequence
MFVFMFFYHDWFLVSIHLESLHLLFEFFIIFNLTLSLSNPHWFKVPIINNCFHYHCHLILCVFKFLLFIMANLPRFGRAWQRTTAGARPVPATAQAASEPEPEILPLAPT
TQSLQLEPNPPPVATIIRLTSSPVSPSRKSFNRKHSISPNSYQKSVKPTTPPLSPLALPKSANVNTIKSIIQPEVERIADLYKKPAKPERRTAEAINLSGHNVGVIMEVK
QSSDQISGGEVIKKIESETGSRHGNDDAKTGFPMTQFMNNNFQEVNNSIVFNSSCSGRDPGLHLDFSGKTKDDGAIVDGGEKSKY