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Sed0027954 (gene) of Chayote v1 genome

Gene IDSed0027954
OrganismSechium edule (Chayote v1)
DescriptionRNase H domain-containing protein
Genome locationLG01:42485215..42485988
RNA-Seq ExpressionSed0027954
SyntenySed0027954
Gene Ontology termsGO:0003676 - nucleic acid binding (molecular function)
GO:0004523 - RNA-DNA hybrid ribonuclease activity (molecular function)
InterPro domainsIPR002156 - Ribonuclease H domain
IPR012337 - Ribonuclease H-like superfamily
IPR036397 - Ribonuclease H superfamily
IPR044730 - Ribonuclease H-like domain, plant type


Homology Show/hide homology
GenBank top hitse value%identityAlignment
XP_023881891.1 uncharacterized protein LOC111994244 [Quercus suber]7.7e-1235.97Show/hide
Query:  SISKWIPPPPNFLKLNVDAAVPSNGNKFGGGAVVRNSLGLCCGARCIY-----------PMALLDGLKLVCEMGIAAIEIESDSKGLVNAIN----SGSL
        S  KW+ PPP   K+NVD A    G     G ++R++ G  C A C Y            +A+  GL L  E  +  I +ESD+  +V+ +N    SG L
Subjt:  SISKWIPPPPNFLKLNVDAAVPSNGNKFGGGAVVRNSLGLCCGARCIY-----------PMALLDGLKLVCEMGIAAIEIESDSKGLVNAIN----SGSL

Query:  QSSSSGV--LLKHFGCWSINYVPRVSNQVAHSIASWARI
             G+  LL  FGCW IN+V R  N+ AH +A +AR+
Subjt:  QSSSSGV--LLKHFGCWSINYVPRVSNQVAHSIASWARI

XP_023902041.1 uncharacterized protein LOC112013897 [Quercus suber]2.2e-1130.61Show/hide
Query:  IWNDRNKINCGDSIADSELKV-QWIWKYPEDLNCDDWKKSNIDEDEVGLSSRIIENPSISKWIPPPPNFLKLNVDAAVPSNGNKFGGGAVVRNSLGLCCG
        IW +RNKI     + +S  +V ++IW +          K  ++      +   I   S  KW+ PPP   K+NVD A    G     G ++R++ G  C 
Subjt:  IWNDRNKINCGDSIADSELKV-QWIWKYPEDLNCDDWKKSNIDEDEVGLSSRIIENPSISKWIPPPPNFLKLNVDAAVPSNGNKFGGGAVVRNSLGLCCG

Query:  ARCIY-----------PMALLDGLKLVCEMGIAAIEIESDSKGLVNAIN----SGSLQSSSSGV--LLKHFGCWSINYVPRVSNQVAHSIASWARI
        A C Y            +A+  GL L  E  +  I +ESD+  +V+ +N    SG L     G+  LL  F CW I +V R  N+ AH +A +AR+
Subjt:  ARCIY-----------PMALLDGLKLVCEMGIAAIEIESDSKGLVNAIN----SGSLQSSSSGV--LLKHFGCWSINYVPRVSNQVAHSIASWARI

XP_023907861.1 uncharacterized protein LOC112019574 [Quercus suber]8.5e-1132.65Show/hide
Query:  LSSRIIENPSISKWIPPPPNFLKLNVDAAVPSNGNKFGGGAVVRNSLGLCCGARC-----IYP------MALLDGLKLVCEMGIAAIEIESDSKGLVNAI
        +SS I      S W PPPP + K+NVD A   +G     G ++ +S G    A C      YP      +A+ +G+ L  E+ ++ I IE D+  +V +I
Subjt:  LSSRIIENPSISKWIPPPPNFLKLNVDAAVPSNGNKFGGGAVVRNSLGLCCGARC-----IYP------MALLDGLKLVCEMGIAAIEIESDSKGLVNAI

Query:  NSGSLQSSSSGVL------LKHFGCWSINYVPRVSNQVAHSIASWAR
        NS  L      +L      L HF CW + ++ R  N+ AH++A++AR
Subjt:  NSGSLQSSSSGVL------LKHFGCWSINYVPRVSNQVAHSIASWAR

XP_030505962.1 uncharacterized protein LOC115720894 [Cannabis sativa]5.4e-1332.02Show/hide
Query:  MLSRIHFSSVLDDFASEKSAAELEVI-----VIWNDRNKINCGDSIADSELKVQWIWKYPEDLNCDDWKKSNIDEDEVGLSSRIIENPSISKWIPPPPNF
        ML+R+ FS  L   ++ K+ +E+E +      +W DRN    G  +    L    IW       C+    S I    +  +    +    SKWI PP N 
Subjt:  MLSRIHFSSVLDDFASEKSAAELEVI-----VIWNDRNKINCGDSIADSELKVQWIWKYPEDLNCDDWKKSNIDEDEVGLSSRIIENPSISKWIPPPPNF

Query:  LKLNVDAAVPSNGNKFGGGAVVRNSLGLCCGA-----------RCIYPMALLDGLKLVCEMGIAAIEIESDSKGLVNAINSGSLQSSSSGVL-------L
        LK+NVDAA   + NK G G +VRNS G    A           + +   ALL GL       +    +ESDS  LVN+INS S   SS G L       L
Subjt:  LKLNVDAAVPSNGNKFGGGAVVRNSLGLCCGA-----------RCIYPMALLDGLKLVCEMGIAAIEIESDSKGLVNAINSGSLQSSSSGVL-------L

Query:  KHFGCWSINYVPRVSNQVAHSIASWARI
         +     +++V R +NQ AH +A  A +
Subjt:  KHFGCWSINYVPRVSNQVAHSIASWARI

XP_030934661.1 uncharacterized protein LOC115960098 [Quercus lobata]3.8e-1126.8Show/hide
Query:  IWNDRNKINCGDSIADSELKVQWIWKYPEDLNCDDWKKSNIDEDEVGLSSRIIENPSISKWIPPPPNFLKLNVDAAVPSNGNKFGGGAVVRNSLGLCCGA
        IW  RNK+  GD++A   +  Q         +  ++++S+++        +   +P ++KW+PPPPN++K+N D A   + +  G GA++RN +GL   A
Subjt:  IWNDRNKINCGDSIADSELKVQWIWKYPEDLNCDDWKKSNIDEDEVGLSSRIIENPSISKWIPPPPNFLKLNVDAAVPSNGNKFGGGAVVRNSLGLCCGA

Query:  -----------RCIYPMALLDGLKLVCEMGIAAIEIESDSKGLVNAINSGSLQSSSSGVLLK-------HFGCWSINYVPRVSNQVAHSIASWA
                     +  +A    L    ++G   + +E DS+ ++ A++S  L +SS G +L+         G    N+  R  N+VAH +A  A
Subjt:  -----------RCIYPMALLDGLKLVCEMGIAAIEIESDSKGLVNAINSGSLQSSSSGVLLK-------HFGCWSINYVPRVSNQVAHSIASWA

TrEMBL top hitse value%identityAlignment
A0A200QJ57 Ribonuclease H domain1.0e-0932.32Show/hide
Query:  ISKWIPPPPNFLKLNVDAAVPSNGNKFGGGAVVRNSLGLCCGARCIY----------PMALLDGLKLVCEMGIAAIEIESDSKGLVNAINSGSLQSS-SS
        +S W PP   + K+N D A   N +K G G V R+S GL   A  ++            A+   +K   E  I A+EIESD+K +V  +   +   + ++
Subjt:  ISKWIPPPPNFLKLNVDAAVPSNGNKFGGGAVVRNSLGLCCGARCIY----------PMALLDGLKLVCEMGIAAIEIESDSKGLVNAINSGSLQSS-SS

Query:  GVLLKHFGCWSI-------NYVPRVSNQVAHSIASWARID-------FHPKWLCRLLDRDISVC
          LLK    WS+       NYVPRV N+VAH +A W +           P WL  +L  D  +C
Subjt:  GVLLKHFGCWSI-------NYVPRVSNQVAHSIASWARID-------FHPKWLCRLLDRDISVC

A0A200RA93 Ribonuclease H domain1.0e-0932.32Show/hide
Query:  ISKWIPPPPNFLKLNVDAAVPSNGNKFGGGAVVRNSLGLCCGARCIY----------PMALLDGLKLVCEMGIAAIEIESDSKGLVNAINSGSLQSS-SS
        +S W PP   + K+N D A   N +K G G V R+S GL   A  ++            A+   +K   E  I A+EIESD+K +V  +   +   + ++
Subjt:  ISKWIPPPPNFLKLNVDAAVPSNGNKFGGGAVVRNSLGLCCGARCIY----------PMALLDGLKLVCEMGIAAIEIESDSKGLVNAINSGSLQSS-SS

Query:  GVLLKHFGCWSI-------NYVPRVSNQVAHSIASWARID-------FHPKWLCRLLDRDISVC
          LLK    WS+       NYVPRV N+VAH +A W +           P WL  +L  D  +C
Subjt:  GVLLKHFGCWSI-------NYVPRVSNQVAHSIASWARID-------FHPKWLCRLLDRDISVC

A0A2P6QT88 Putative ribonuclease H-like domain, reverse transcriptase zinc-binding domain-containing protein7.8e-1028.64Show/hide
Query:  IWNDRNK-INCGDSIADSELKVQWIWKYPEDLNCDDWK---KSNIDEDEVGLSSRIIENPSISKWIPPPPNFLKLNVDAAVPSNGNKFGGGAVVRNSLGL
        IW DRN  I+   S+  SEL             C DW+   K   ++ +    +   +N    KW  PPP + KLN D A  +NG   G GAV+RN LG 
Subjt:  IWNDRNK-INCGDSIADSELKVQWIWKYPEDLNCDDWK---KSNIDEDEVGLSSRIIENPSISKWIPPPPNFLKLNVDAAVPSNGNKFGGGAVVRNSLGL

Query:  CCGA-----------RCIYPMALLDGLKLVCEMGIAAIEIESDSKGLVNAINSGSLQSSSSG-------VLLKHFGCWSINYVPRVSNQVAHSIASWARI
          GA             +  +AL +GL+    +GI  +E+E D+  ++N+++      +  G       +LL+ F   +  +V + +NQVAH +A  A  
Subjt:  CCGA-----------RCIYPMALLDGLKLVCEMGIAAIEIESDSKGLVNAINSGSLQSSSSG-------VLLKHFGCWSINYVPRVSNQVAHSIASWARI

Query:  DFH--------PKWLCRLLD
                   P WL  L++
Subjt:  DFH--------PKWLCRLLD

A0A803NGI9 Uncharacterized protein6.0e-1029.69Show/hide
Query:  MLSRIHFSSVLDDFASEKSAAELEVIV-----IWNDRNKINCGDSIADSELKVQWIWKYPEDLNCDDWKKSNIDE---DEVGLSSRIIENPSISKWIPPP
        ++SR+ F+  L   ++ KS +E+E ++     +WNDRN    G       L    +W       C+  ++S   +   D  G +++         WI PP
Subjt:  MLSRIHFSSVLDDFASEKSAAELEVIV-----IWNDRNKINCGDSIADSELKVQWIWKYPEDLNCDDWKKSNIDE---DEVGLSSRIIENPSISKWIPPP

Query:  PNFLKLNVDAAVPSNGNKFGGGAVVRNSLGLCCGA-----------RCIYPMALLDGLKLVCEMGIAAIEIESDSKGLVNAINSGSLQSSSSGVL-----
         + LK+NVDAA   + NK G G ++RNS G    A           + +   ALL G+       ++    ESDS  LVN+INS S   SS G L     
Subjt:  PNFLKLNVDAAVPSNGNKFGGGAVVRNSLGLCCGA-----------RCIYPMALLDGLKLVCEMGIAAIEIESDSKGLVNAINSGSLQSSSSGVL-----

Query:  --LKHFGCWSINYVPRVSNQVAHSIASWA
          L +     +++V R +NQ AH +A  A
Subjt:  --LKHFGCWSINYVPRVSNQVAHSIASWA

A0A803NI87 Uncharacterized protein2.6e-1332.02Show/hide
Query:  MLSRIHFSSVLDDFASEKSAAELEVI-----VIWNDRNKINCGDSIADSELKVQWIWKYPEDLNCDDWKKSNIDEDEVGLSSRIIENPSISKWIPPPPNF
        ML+R+ FS  L   ++ K+ +E+E +      +W DRN    G  +    L    IW       C+    S I    +  +    +    SKWI PP N 
Subjt:  MLSRIHFSSVLDDFASEKSAAELEVI-----VIWNDRNKINCGDSIADSELKVQWIWKYPEDLNCDDWKKSNIDEDEVGLSSRIIENPSISKWIPPPPNF

Query:  LKLNVDAAVPSNGNKFGGGAVVRNSLGLCCGA-----------RCIYPMALLDGLKLVCEMGIAAIEIESDSKGLVNAINSGSLQSSSSGVL-------L
        LK+NVDAA   + NK G G +VRNS G    A           + +   ALL GL       +    +ESDS  LVN+INS S   SS G L       L
Subjt:  LKLNVDAAVPSNGNKFGGGAVVRNSLGLCCGA-----------RCIYPMALLDGLKLVCEMGIAAIEIESDSKGLVNAINSGSLQSSSSGVL-------L

Query:  KHFGCWSINYVPRVSNQVAHSIASWARI
         +     +++V R +NQ AH +A  A +
Subjt:  KHFGCWSINYVPRVSNQVAHSIASWARI

SwissProt top hitse value%identityAlignment
No hits found
Arabidopsis top hitse value%identityAlignment
AT2G02650.1 Ribonuclease H-like superfamily protein7.5e-0528.36Show/hide
Query:  SKWIPPPPNFLKLNVDAAVPSNGNKFGGGAVVRNSLG---LCCGARC--------IYPMALLDGLKLVCEMGIAAIEIESDSKGLVNAINSGSLQSSSSG
        S+W PPP  ++K N D+           G  +R   G   LC  A+            +  L  L+++   G+  +  ESDSK LV  IN+G    S  G
Subjt:  SKWIPPPPNFLKLNVDAAVPSNGNKFGGGAVVRNSLG---LCCGARC--------IYPMALLDGLKLVCEMGIAAIEIESDSKGLVNAINSGSLQSSSSG

Query:  VLLKHFGCW-------SINYVPRVSNQVAHSIAS
         L+     W       S+ +V R  N  A ++AS
Subjt:  VLLKHFGCW-------SINYVPRVSNQVAHSIAS


Sequences Show/hide sequences
CDS sequenceShow/hide CDS sequence
ATGCTCTCTAGAATTCATTTCTCATCGGTTCTGGATGATTTTGCTAGTGAAAAATCAGCTGCAGAGCTTGAAGTTATAGTAATCTGGAATGATAGGAACAAGATTAATTG
TGGTGATTCAATTGCTGATAGTGAGCTAAAAGTTCAATGGATTTGGAAATACCCTGAGGATCTAAATTGTGATGATTGGAAAAAGTCTAATATCGATGAGGATGAGGTTG
GTTTAAGTTCCAGAATCATTGAAAACCCTTCTATCTCAAAATGGATCCCTCCTCCACCAAATTTTCTGAAACTTAATGTTGATGCAGCAGTTCCAAGCAATGGTAATAAG
TTTGGTGGTGGAGCGGTTGTGCGCAACTCTTTGGGTCTATGTTGTGGTGCTCGTTGTATATATCCAATGGCTTTGTTGGATGGTTTGAAGTTGGTCTGTGAAATGGGTAT
TGCTGCTATTGAAATTGAATCTGATTCGAAGGGGTTGGTGAATGCGATCAATAGTGGAAGTTTACAAAGCTCTTCATCGGGAGTTTTGCTGAAGCATTTTGGTTGTTGGT
CTATCAATTATGTTCCTAGGGTTTCAAACCAGGTTGCCCATTCTATTGCCAGCTGGGCCAGGATAGATTTTCATCCTAAGTGGTTGTGTAGGCTTCTTGATAGAGATATT
AGTGTGTGTAATCTAATGGGAATTTTCTTTTCAAAAATAAATGTGAACAAAGAATTTGTGGAAAGTGACAAGTATAATTAA
mRNA sequenceShow/hide mRNA sequence
ATGCTCTCTAGAATTCATTTCTCATCGGTTCTGGATGATTTTGCTAGTGAAAAATCAGCTGCAGAGCTTGAAGTTATAGTAATCTGGAATGATAGGAACAAGATTAATTG
TGGTGATTCAATTGCTGATAGTGAGCTAAAAGTTCAATGGATTTGGAAATACCCTGAGGATCTAAATTGTGATGATTGGAAAAAGTCTAATATCGATGAGGATGAGGTTG
GTTTAAGTTCCAGAATCATTGAAAACCCTTCTATCTCAAAATGGATCCCTCCTCCACCAAATTTTCTGAAACTTAATGTTGATGCAGCAGTTCCAAGCAATGGTAATAAG
TTTGGTGGTGGAGCGGTTGTGCGCAACTCTTTGGGTCTATGTTGTGGTGCTCGTTGTATATATCCAATGGCTTTGTTGGATGGTTTGAAGTTGGTCTGTGAAATGGGTAT
TGCTGCTATTGAAATTGAATCTGATTCGAAGGGGTTGGTGAATGCGATCAATAGTGGAAGTTTACAAAGCTCTTCATCGGGAGTTTTGCTGAAGCATTTTGGTTGTTGGT
CTATCAATTATGTTCCTAGGGTTTCAAACCAGGTTGCCCATTCTATTGCCAGCTGGGCCAGGATAGATTTTCATCCTAAGTGGTTGTGTAGGCTTCTTGATAGAGATATT
AGTGTGTGTAATCTAATGGGAATTTTCTTTTCAAAAATAAATGTGAACAAAGAATTTGTGGAAAGTGACAAGTATAATTAA
Protein sequenceShow/hide protein sequence
MLSRIHFSSVLDDFASEKSAAELEVIVIWNDRNKINCGDSIADSELKVQWIWKYPEDLNCDDWKKSNIDEDEVGLSSRIIENPSISKWIPPPPNFLKLNVDAAVPSNGNK
FGGGAVVRNSLGLCCGARCIYPMALLDGLKLVCEMGIAAIEIESDSKGLVNAINSGSLQSSSSGVLLKHFGCWSINYVPRVSNQVAHSIASWARIDFHPKWLCRLLDRDI
SVCNLMGIFFSKINVNKEFVESDKYN