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Sed0027960 (gene) of Chayote v1 genome

Gene IDSed0027960
OrganismSechium edule (Chayote v1)
DescriptionMYB transcription factor
Genome locationLG12:2612824..2615041
RNA-Seq ExpressionSed0027960
SyntenySed0027960
Gene Ontology termsGO:0006355 - regulation of transcription, DNA-templated (biological process)
GO:0005634 - nucleus (cellular component)
GO:0016021 - integral component of membrane (cellular component)
GO:0003700 - DNA-binding transcription factor activity (molecular function)
GO:0043565 - sequence-specific DNA binding (molecular function)
InterPro domainsIPR001005 - SANT/Myb domain
IPR009057 - Homeobox-like domain superfamily
IPR017930 - Myb domain
IPR044676 - MYB-like transcription factor EOBI/EOBII-like, plant


Homology Show/hide homology
GenBank top hitse value%identityAlignment
KAA0049202.1 transcription factor MYB24-like [Cucumis melo var. makuwa]7.0e-4794.68Show/hide
Query:  MVGNWGWGLMEDELWRKGPWTAEEDRLLMEYVRIYGEGRWNSVARLAGLKRNGKSCRLRWVNYLRPDLKRGQITPHEESIILELHARWGNRNKT
        MVG+W WGLMEDE+WRKGPWTAEEDRLLMEYVRIYGEGRWNSVARLAGLKRNGKSCRLRWVNYLRPDLKRGQITPHEESIILELHARWGNR  T
Subjt:  MVGNWGWGLMEDELWRKGPWTAEEDRLLMEYVRIYGEGRWNSVARLAGLKRNGKSCRLRWVNYLRPDLKRGQITPHEESIILELHARWGNRNKT

XP_004134395.2 transcription factor MYB24 [Cucumis sativus]7.0e-4794.68Show/hide
Query:  MVGNWGWGLMEDELWRKGPWTAEEDRLLMEYVRIYGEGRWNSVARLAGLKRNGKSCRLRWVNYLRPDLKRGQITPHEESIILELHARWGNRNKT
        MVG+W WGLMEDE+WRKGPWTAEEDRLLMEYVRIYGEGRWNSVARLAGLKRNGKSCRLRWVNYLRPDLKRGQITPHEESIILELHARWGNR  T
Subjt:  MVGNWGWGLMEDELWRKGPWTAEEDRLLMEYVRIYGEGRWNSVARLAGLKRNGKSCRLRWVNYLRPDLKRGQITPHEESIILELHARWGNRNKT

XP_008438441.1 PREDICTED: transcription factor MYB24-like [Cucumis melo]7.0e-4794.68Show/hide
Query:  MVGNWGWGLMEDELWRKGPWTAEEDRLLMEYVRIYGEGRWNSVARLAGLKRNGKSCRLRWVNYLRPDLKRGQITPHEESIILELHARWGNRNKT
        MVG+W WGLMEDE+WRKGPWTAEEDRLLMEYVRIYGEGRWNSVARLAGLKRNGKSCRLRWVNYLRPDLKRGQITPHEESIILELHARWGNR  T
Subjt:  MVGNWGWGLMEDELWRKGPWTAEEDRLLMEYVRIYGEGRWNSVARLAGLKRNGKSCRLRWVNYLRPDLKRGQITPHEESIILELHARWGNRNKT

XP_023528479.1 transcription factor WER [Cucurbita pepo subsp. pepo]6.0e-4694.51Show/hide
Query:  MVGNWGWGLMEDELWRKGPWTAEEDRLLMEYVRIYGEGRWNSVARLAGLKRNGKSCRLRWVNYLRPDLKRGQITPHEESIILELHARWGNR
        MVG+W WGL+EDE+WRKGPWTAEEDRLLMEYVRIYGEGRWNSVARL GLKRNGKSCRLRWVNYLRPDLKRGQITPHEESIILELHARWGNR
Subjt:  MVGNWGWGLMEDELWRKGPWTAEEDRLLMEYVRIYGEGRWNSVARLAGLKRNGKSCRLRWVNYLRPDLKRGQITPHEESIILELHARWGNR

XP_038875035.1 MYB-like transcription factor EOBII [Benincasa hispida]2.7e-4694.68Show/hide
Query:  MVGNWGWGLMEDELWRKGPWTAEEDRLLMEYVRIYGEGRWNSVARLAGLKRNGKSCRLRWVNYLRPDLKRGQITPHEESIILELHARWGNRNKT
        MVG+W WGLMEDE WRKGPWTAEEDRLLMEYVRIYGEGRWNSVARLAGLKRNGKSCRLRWVNYLRPDLKRGQITPHEESIILELHARWGNR  T
Subjt:  MVGNWGWGLMEDELWRKGPWTAEEDRLLMEYVRIYGEGRWNSVARLAGLKRNGKSCRLRWVNYLRPDLKRGQITPHEESIILELHARWGNRNKT

TrEMBL top hitse value%identityAlignment
A0A0A0L9L8 HTH myb-type domain-containing protein5.3e-4886.67Show/hide
Query:  MVGNWGWGLMEDELWRKGPWTAEEDRLLMEYVRIYGEGRWNSVARLAGLKRNGKSCRLRWVNYLRPDLKRGQITPHEESIILELHARWGNRNK-TPIQIS
        MVG+W WGLMEDE+WRKGPWTAEEDRLLMEYVRIYGEGRWNSVARLAGLKRNGKSCRLRWVNYLRPDLKRGQITPHEESIILELHARWGNR +   + + 
Subjt:  MVGNWGWGLMEDELWRKGPWTAEEDRLLMEYVRIYGEGRWNSVARLAGLKRNGKSCRLRWVNYLRPDLKRGQITPHEESIILELHARWGNRNK-TPIQIS

Query:  IGKNK
        +GK K
Subjt:  IGKNK

A0A1S3AW20 transcription factor MYB24-like3.4e-4794.68Show/hide
Query:  MVGNWGWGLMEDELWRKGPWTAEEDRLLMEYVRIYGEGRWNSVARLAGLKRNGKSCRLRWVNYLRPDLKRGQITPHEESIILELHARWGNRNKT
        MVG+W WGLMEDE+WRKGPWTAEEDRLLMEYVRIYGEGRWNSVARLAGLKRNGKSCRLRWVNYLRPDLKRGQITPHEESIILELHARWGNR  T
Subjt:  MVGNWGWGLMEDELWRKGPWTAEEDRLLMEYVRIYGEGRWNSVARLAGLKRNGKSCRLRWVNYLRPDLKRGQITPHEESIILELHARWGNRNKT

A0A5D3D065 Transcription factor MYB24-like3.4e-4794.68Show/hide
Query:  MVGNWGWGLMEDELWRKGPWTAEEDRLLMEYVRIYGEGRWNSVARLAGLKRNGKSCRLRWVNYLRPDLKRGQITPHEESIILELHARWGNRNKT
        MVG+W WGLMEDE+WRKGPWTAEEDRLLMEYVRIYGEGRWNSVARLAGLKRNGKSCRLRWVNYLRPDLKRGQITPHEESIILELHARWGNR  T
Subjt:  MVGNWGWGLMEDELWRKGPWTAEEDRLLMEYVRIYGEGRWNSVARLAGLKRNGKSCRLRWVNYLRPDLKRGQITPHEESIILELHARWGNRNKT

A0A6J1EFX6 transcription factor WER2.9e-4694.51Show/hide
Query:  MVGNWGWGLMEDELWRKGPWTAEEDRLLMEYVRIYGEGRWNSVARLAGLKRNGKSCRLRWVNYLRPDLKRGQITPHEESIILELHARWGNR
        MVG+W WGL+EDE+WRKGPWTAEEDRLLMEYVRIYGEGRWNSVARL GLKRNGKSCRLRWVNYLRPDLKRGQITPHEESIILELHARWGNR
Subjt:  MVGNWGWGLMEDELWRKGPWTAEEDRLLMEYVRIYGEGRWNSVARLAGLKRNGKSCRLRWVNYLRPDLKRGQITPHEESIILELHARWGNR

A0A6J1IZ55 transcription factor WER2.9e-4694.51Show/hide
Query:  MVGNWGWGLMEDELWRKGPWTAEEDRLLMEYVRIYGEGRWNSVARLAGLKRNGKSCRLRWVNYLRPDLKRGQITPHEESIILELHARWGNR
        MVG+W WGL+EDE+WRKGPWTAEEDRLLMEYVRIYGEGRWNSVARL GLKRNGKSCRLRWVNYLRPDLKRGQITPHEESIILELHARWGNR
Subjt:  MVGNWGWGLMEDELWRKGPWTAEEDRLLMEYVRIYGEGRWNSVARLAGLKRNGKSCRLRWVNYLRPDLKRGQITPHEESIILELHARWGNR

SwissProt top hitse value%identityAlignment
L7R9Z0 MYB-like transcription factor EOBI1.2e-2869.74Show/hide
Query:  RKGPWTAEEDRLLMEYVRIYGEGRWNSVARLAGLKRNGKSCRLRWVNYLRPDLKRGQITPHEESIILELHARWGNR
        RKGPWT EED +L+ Y+  +GEG WNS+AR AGLKR GKSCRLRW+NYLRPD++RG ITP E+ +I+ELHA+WGNR
Subjt:  RKGPWTAEEDRLLMEYVRIYGEGRWNSVARLAGLKRNGKSCRLRWVNYLRPDLKRGQITPHEESIILELHARWGNR

P81391 Myb-related protein 3051.2e-2869.74Show/hide
Query:  RKGPWTAEEDRLLMEYVRIYGEGRWNSVARLAGLKRNGKSCRLRWVNYLRPDLKRGQITPHEESIILELHARWGNR
        RKGPWT EED +L+ Y+  +GEG WNS+AR AGLKR GKSCRLRW+NYLRPD++RG ITP E+ +I+ELHA+WGNR
Subjt:  RKGPWTAEEDRLLMEYVRIYGEGRWNSVARLAGLKRNGKSCRLRWVNYLRPDLKRGQITPHEESIILELHARWGNR

Q10MB4 Transcription factor MYB22.1e-3073.68Show/hide
Query:  RKGPWTAEEDRLLMEYVRIYGEGRWNSVARLAGLKRNGKSCRLRWVNYLRPDLKRGQITPHEESIILELHARWGNR
        R+GPWT EED LL+ Y+  +GEGRWNS+AR AGLKR GKSCRLRW+NYLRPDL+RG ITP E+ +ILELH+RWGNR
Subjt:  RKGPWTAEEDRLLMEYVRIYGEGRWNSVARLAGLKRNGKSCRLRWVNYLRPDLKRGQITPHEESIILELHARWGNR

Q9C9G7 Transcription factor MYB626.9e-2966.67Show/hide
Query:  EDELWRKGPWTAEEDRLLMEYVRIYGEGRWNSVARLAGLKRNGKSCRLRWVNYLRPDLKRGQITPHEESIILELHARWGNR
        EDE  R+GPWT EED LL  Y+   GEGRWN VA+ AGLKR GKSCRLRW+NYL+PD++RG +TP E+ +ILELH++WGNR
Subjt:  EDELWRKGPWTAEEDRLLMEYVRIYGEGRWNSVARLAGLKRNGKSCRLRWVNYLRPDLKRGQITPHEESIILELHARWGNR

Q9LDE1 Transcription factor MYB1082.0e-2867.47Show/hide
Query:  MEDEL-WRKGPWTAEEDRLLMEYVRIYGEGRWNSVARLAGLKRNGKSCRLRWVNYLRPDLKRGQITPHEESIILELHARWGNR
        MEDE+  ++GPWTAEED  LM Y+   GEGRWNS++R AGL+R GKSCRLRW+NYLRPD++RG IT  E+ +ILELH+RWGNR
Subjt:  MEDEL-WRKGPWTAEEDRLLMEYVRIYGEGRWNSVARLAGLKRNGKSCRLRWVNYLRPDLKRGQITPHEESIILELHARWGNR

Arabidopsis top hitse value%identityAlignment
AT1G68320.1 myb domain protein 624.9e-3066.67Show/hide
Query:  EDELWRKGPWTAEEDRLLMEYVRIYGEGRWNSVARLAGLKRNGKSCRLRWVNYLRPDLKRGQITPHEESIILELHARWGNR
        EDE  R+GPWT EED LL  Y+   GEGRWN VA+ AGLKR GKSCRLRW+NYL+PD++RG +TP E+ +ILELH++WGNR
Subjt:  EDELWRKGPWTAEEDRLLMEYVRIYGEGRWNSVARLAGLKRNGKSCRLRWVNYLRPDLKRGQITPHEESIILELHARWGNR

AT3G06490.1 myb domain protein 1081.4e-2967.47Show/hide
Query:  MEDEL-WRKGPWTAEEDRLLMEYVRIYGEGRWNSVARLAGLKRNGKSCRLRWVNYLRPDLKRGQITPHEESIILELHARWGNR
        MEDE+  ++GPWTAEED  LM Y+   GEGRWNS++R AGL+R GKSCRLRW+NYLRPD++RG IT  E+ +ILELH+RWGNR
Subjt:  MEDEL-WRKGPWTAEEDRLLMEYVRIYGEGRWNSVARLAGLKRNGKSCRLRWVNYLRPDLKRGQITPHEESIILELHARWGNR

AT3G24310.1 myb domain protein 3052.5e-4285.39Show/hide
Query:  GWGLMEDELWRKGPWTAEEDRLLMEYVRIYGEGRWNSVARLAGLKRNGKSCRLRWVNYLRPDLKRGQITPHEESIILELHARWGNRNKT
        GWG++E E WRKGPWTAEEDRLL++YV+++GEGRWNSVARLAGLKRNGKSCRLRWVNYLRPDLKRGQITPHEE+IILELHA+WGNR  T
Subjt:  GWGLMEDELWRKGPWTAEEDRLLMEYVRIYGEGRWNSVARLAGLKRNGKSCRLRWVNYLRPDLKRGQITPHEESIILELHARWGNRNKT

AT3G30210.1 myb domain protein 1212.0e-3174.68Show/hide
Query:  RKGPWTAEEDRLLMEYVRIYGEGRWNSVARLAGLKRNGKSCRLRWVNYLRPDLKRGQITPHEESIILELHARWGNRNKT
        RKGPWT EED+LL EYV  +GEGRW++VA+ AGL R+GKSCRLRWVNYLRP LKRGQITP EE IILELH+ WGN+  T
Subjt:  RKGPWTAEEDRLLMEYVRIYGEGRWNSVARLAGLKRNGKSCRLRWVNYLRPDLKRGQITPHEESIILELHARWGNRNKT

AT4G13480.1 myb domain protein 794.3e-4287.06Show/hide
Query:  MEDELWRKGPWTAEEDRLLMEYVRIYGEGRWNSVARLAGLKRNGKSCRLRWVNYLRPDLKRGQITPHEESIILELHARWGNRNKT
        M +E+WRKGPWTAEEDRLL+EYVR++GEGRWNSV++LAGLKRNGKSCRLRWVNYLRPDLKRGQITPHEESIILELHA+WGNR  T
Subjt:  MEDELWRKGPWTAEEDRLLMEYVRIYGEGRWNSVARLAGLKRNGKSCRLRWVNYLRPDLKRGQITPHEESIILELHARWGNRNKT


Sequences Show/hide sequences
CDS sequenceShow/hide CDS sequence
ATGGTTGGGAATTGGGGTTGGGGTTTAATGGAAGATGAGCTTTGGAGGAAAGGACCTTGGACTGCTGAGGAGGACAGATTGCTTATGGAATATGTTAGAATATATGGTGA
AGGAAGATGGAACTCTGTTGCTAGGCTTGCAGGATTGAAGAGAAATGGGAAGAGTTGTAGATTGAGATGGGTGAATTATCTAAGGCCTGACTTAAAGAGGGGACAAATAA
CCCCACATGAAGAAAGCATAATTCTTGAGCTTCATGCTAGGTGGGGCAACAGAAACAAAACTCCAATCCAGATCTCAATTGGTAAAAACAAAGAGTAA
mRNA sequenceShow/hide mRNA sequence
ATGGTTGGGAATTGGGGTTGGGGTTTAATGGAAGATGAGCTTTGGAGGAAAGGACCTTGGACTGCTGAGGAGGACAGATTGCTTATGGAATATGTTAGAATATATGGTGA
AGGAAGATGGAACTCTGTTGCTAGGCTTGCAGGATTGAAGAGAAATGGGAAGAGTTGTAGATTGAGATGGGTGAATTATCTAAGGCCTGACTTAAAGAGGGGACAAATAA
CCCCACATGAAGAAAGCATAATTCTTGAGCTTCATGCTAGGTGGGGCAACAGAAACAAAACTCCAATCCAGATCTCAATTGGTAAAAACAAAGAGTAA
Protein sequenceShow/hide protein sequence
MVGNWGWGLMEDELWRKGPWTAEEDRLLMEYVRIYGEGRWNSVARLAGLKRNGKSCRLRWVNYLRPDLKRGQITPHEESIILELHARWGNRNKTPIQISIGKNKE