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Sed0027972 (gene) of Chayote v1 genome

Gene IDSed0027972
OrganismSechium edule (Chayote v1)
DescriptionNuclear transcription factor Y subunit B-3
Genome locationLG01:4260963..4261616
RNA-Seq ExpressionSed0027972
SyntenySed0027972
Gene Ontology termsGO:0016020 - membrane (cellular component)
InterPro domainsNA


Homology Show/hide homology
GenBank top hitse value%identityAlignment
XP_008464163.1 PREDICTED: uncharacterized protein LOC103502111 [Cucumis melo]2.6e-5862.93Show/hide
Query:  MKFKIKVEDQMAD-LSFKTPFSWFISLTFFLLCLSFFGFK-FSSFLLTSTALIMSIFYFSISKKNPIPIHKFVQEKKEVK-------SFVSDRKFS----
        MK KIKVE+QMA+    + P SWF+ LTFFL CL F GF+ FSSFL TS ALIMS+ YFSISK++ +PI KFVQE++E +       +F SD   S    
Subjt:  MKFKIKVEDQMAD-LSFKTPFSWFISLTFFLLCLSFFGFK-FSSFLLTSTALIMSIFYFSISKKNPIPIHKFVQEKKEVK-------SFVSDRKFS----

Query:  -PATGDLSSESECADDNFTTTEESEMEWPFSDRVYL-----DRSDDGSISDEESLIEIALPTGHYVSNKFD--EDEEEVDDMSFCYQKLS----------
         P T DL SESECADDNFTTTEESE+EWP+ D  +       RSDDGSISDEESLIEIALPTGHYVS KFD  +++E+ DD  F YQKLS          
Subjt:  -PATGDLSSESECADDNFTTTEESEMEWPFSDRVYL-----DRSDDGSISDEESLIEIALPTGHYVSNKFD--EDEEEVDDMSFCYQKLS----------

Query:  -AEINDINEEENLIEIDISIGSIKYSRFEIEA
         AEINDINEEENLIEIDIS+GSIKYSRFEIEA
Subjt:  -AEINDINEEENLIEIDISIGSIKYSRFEIEA

XP_011656887.2 uncharacterized protein LOC105435780 [Cucumis sativus]1.4e-5964.07Show/hide
Query:  MKFKIKVEDQMAD-LSFKTPFSWFISLTFFLLCLSFFGFK-FSSFLLTSTALIMSIFYFSISKKNPIPIHKFVQEKKEVK--------SFVSDRKFS---
        MK KIKVE+QMA+ L  + P SW I LTFFLLCL F+GF+ FSSFL TS ALIMS+ YFSISK+N +PI KFVQE++E +        +F SD   S   
Subjt:  MKFKIKVEDQMAD-LSFKTPFSWFISLTFFLLCLSFFGFK-FSSFLLTSTALIMSIFYFSISKKNPIPIHKFVQEKKEVK--------SFVSDRKFS---

Query:  --PATGDLSSESECADDNFTTTEESEMEWPFSDRVY-----LDRSDDGSISDEESLIEIALPTGHYVSNKFDEDEEEVDDMSFCYQKLS-----------
          P   DL SESECADDNFTTTEESE+EWP+ D  +       RSDDGSISDEESLIEIALPTGHYVS KFD+ +E+ DD+SF YQKL+           
Subjt:  --PATGDLSSESECADDNFTTTEESEMEWPFSDRVY-----LDRSDDGSISDEESLIEIALPTGHYVSNKFDEDEEEVDDMSFCYQKLS-----------

Query:  AEINDINEEENLIEIDISIGSIKYSRFEIEA
        AEINDINEEENLIEIDIS+GSIKYSRFEIEA
Subjt:  AEINDINEEENLIEIDISIGSIKYSRFEIEA

XP_022140584.1 uncharacterized protein LOC111011203 [Momordica charantia]7.3e-6166.09Show/hide
Query:  MKFKIKVEDQMADLSFKTPFSWFISLTFFLLCLSFFGFKFSS-FLLTSTALIMSIFYFSISKKN------PIPIHKFVQEKKEVK----SFVSDRKFSPA
        MK KI+VEDQMA    + P SWF   +F LLCL F G +FSS F LTST LIMS+ YF+ISK+N      PIPI KFV+E++E      SF SD+KFS A
Subjt:  MKFKIKVEDQMADLSFKTPFSWFISLTFFLLCLSFFGFKFSS-FLLTSTALIMSIFYFSISKKN------PIPIHKFVQEKKEVK----SFVSDRKFSPA

Query:  ---TGDLSSESECADDNFTTTEESEMEWPFSDRVYLDRSD--DGSISDEESLIEIALPTGHYVSNKFDEDE--EEVDDMSFCYQKLS------------A
           TGDL SESECADDNFTTTEESE+EWPFSDR      D  DGSISDEESLIEIALPTGHYVS+KFD+DE  E+ DDMSF  QKLS            A
Subjt:  ---TGDLSSESECADDNFTTTEESEMEWPFSDRVYLDRSD--DGSISDEESLIEIALPTGHYVSNKFDEDE--EEVDDMSFCYQKLS------------A

Query:  EINDINEEENLIEIDISIGSIKYSRFEIEA
        EINDINEEENLIEIDIS+GSIKYSRFEIEA
Subjt:  EINDINEEENLIEIDISIGSIKYSRFEIEA

XP_022985724.1 uncharacterized protein LOC111483694 [Cucurbita maxima]5.8e-5866.38Show/hide
Query:  MKFKIKVEDQMADLSFKTPFSWFISLTFFLLCLSFFGF--KFSSFLLTSTALIMSIFYFSISKKNPIPIHKFV-----QEKKEVKSFVSD-RKFSPA---
        MK KI  EDQMA    K P S FI LTFFLL LSF GF   FSSFLLT TALIMS+ YFSISK NP P+HK +     +E+KE+    SD R FS A   
Subjt:  MKFKIKVEDQMADLSFKTPFSWFISLTFFLLCLSFFGF--KFSSFLLTSTALIMSIFYFSISKKNPIPIHKFV-----QEKKEVKSFVSD-RKFSPA---

Query:  TGDLSSESECADDNFTTTEESEMEWPFSDR---VYLDRSDDGSISDEESLIEIALPTGHYVSNKFDEDEEEVDDMSFCYQKLS---------------AE
        T DL SESECADDNFTTTEESE+EWPF DR     L RSDDGSISDEESLIEIALPTGHYV++K D+D+++ DDMSFC+QKLS               AE
Subjt:  TGDLSSESECADDNFTTTEESEMEWPFSDR---VYLDRSDDGSISDEESLIEIALPTGHYVSNKFDEDEEEVDDMSFCYQKLS---------------AE

Query:  INDINEEENLIEIDISIGSIKYSRFEIEA
        INDINEEENLIEIDIS+GSIKYSRFEIEA
Subjt:  INDINEEENLIEIDISIGSIKYSRFEIEA

XP_038902685.1 uncharacterized protein LOC120089322 [Benincasa hispida]3.1e-5967.43Show/hide
Query:  LSFKTPFSWFISLTFFLLCLSFFGFK-FSSFLLTSTALIMSIFYFSISKKNPIPIHKFVQEKKEVK--------SFVSDRKFS-----PATGDLSSESEC
        L  +TP SWFI+LTFFLLCL F GF+ FSSFLLTS ALIMS+ YFSISK+N +PI KFVQ+ +E +        +F SD   S     P TGDL SESEC
Subjt:  LSFKTPFSWFISLTFFLLCLSFFGFK-FSSFLLTSTALIMSIFYFSISKKNPIPIHKFVQEKKEVK--------SFVSDRKFS-----PATGDLSSESEC

Query:  ADDNFTTTEESEMEWPFSD-RVYL----DRSDDGSISDEESLIEIALPTGHYVSNKFDE-DEEEVDDMSFCYQKLS-----------AEINDINEEENLI
        ADDNFTTTEESE+EWP+ D R Y     DRSDDGSISDEESLIEIALPTGHYVS+KFD+ D+E+ D MSF YQKLS           AEINDINEEENLI
Subjt:  ADDNFTTTEESEMEWPFSD-RVYL----DRSDDGSISDEESLIEIALPTGHYVSNKFDE-DEEEVDDMSFCYQKLS-----------AEINDINEEENLI

Query:  EIDISIGSIKYSRFEIEA
        EIDIS+GSIKYSRFEIEA
Subjt:  EIDISIGSIKYSRFEIEA

TrEMBL top hitse value%identityAlignment
A0A0A0KCP7 Uncharacterized protein1.4e-4464Show/hide
Query:  MSIFYFSISKKNPIPIHKFVQEKKEVK-----SFVSDRKFS-----PATGDLSSESECADDNFTTTEESEMEWPFSDRVY-----LDRSDDGSISDEESL
        MS+ YFSISK+N +PI KFVQE++E +     +F SD   S     P   DL SESECADDNFTTTEESE+EWP+ D  +       RSDDGSISDEESL
Subjt:  MSIFYFSISKKNPIPIHKFVQEKKEVK-----SFVSDRKFS-----PATGDLSSESECADDNFTTTEESEMEWPFSDRVY-----LDRSDDGSISDEESL

Query:  IEIALPTGHYVSNKFDEDEEEVDDMSFCYQKLS-----------AEINDINEEENLIEIDISIGSIKYSRFEIEA
        IEIALPTGHYVS KFD+ +E+ DD+SF YQKL+           AEINDINEEENLIEIDIS+GSIKYSRFEIEA
Subjt:  IEIALPTGHYVSNKFDEDEEEVDDMSFCYQKLS-----------AEINDINEEENLIEIDISIGSIKYSRFEIEA

A0A1S3CMD0 uncharacterized protein LOC1035021111.3e-5862.93Show/hide
Query:  MKFKIKVEDQMAD-LSFKTPFSWFISLTFFLLCLSFFGFK-FSSFLLTSTALIMSIFYFSISKKNPIPIHKFVQEKKEVK-------SFVSDRKFS----
        MK KIKVE+QMA+    + P SWF+ LTFFL CL F GF+ FSSFL TS ALIMS+ YFSISK++ +PI KFVQE++E +       +F SD   S    
Subjt:  MKFKIKVEDQMAD-LSFKTPFSWFISLTFFLLCLSFFGFK-FSSFLLTSTALIMSIFYFSISKKNPIPIHKFVQEKKEVK-------SFVSDRKFS----

Query:  -PATGDLSSESECADDNFTTTEESEMEWPFSDRVYL-----DRSDDGSISDEESLIEIALPTGHYVSNKFD--EDEEEVDDMSFCYQKLS----------
         P T DL SESECADDNFTTTEESE+EWP+ D  +       RSDDGSISDEESLIEIALPTGHYVS KFD  +++E+ DD  F YQKLS          
Subjt:  -PATGDLSSESECADDNFTTTEESEMEWPFSDRVYL-----DRSDDGSISDEESLIEIALPTGHYVSNKFD--EDEEEVDDMSFCYQKLS----------

Query:  -AEINDINEEENLIEIDISIGSIKYSRFEIEA
         AEINDINEEENLIEIDIS+GSIKYSRFEIEA
Subjt:  -AEINDINEEENLIEIDISIGSIKYSRFEIEA

A0A6J1CG35 uncharacterized protein LOC1110112033.5e-6166.09Show/hide
Query:  MKFKIKVEDQMADLSFKTPFSWFISLTFFLLCLSFFGFKFSS-FLLTSTALIMSIFYFSISKKN------PIPIHKFVQEKKEVK----SFVSDRKFSPA
        MK KI+VEDQMA    + P SWF   +F LLCL F G +FSS F LTST LIMS+ YF+ISK+N      PIPI KFV+E++E      SF SD+KFS A
Subjt:  MKFKIKVEDQMADLSFKTPFSWFISLTFFLLCLSFFGFKFSS-FLLTSTALIMSIFYFSISKKN------PIPIHKFVQEKKEVK----SFVSDRKFSPA

Query:  ---TGDLSSESECADDNFTTTEESEMEWPFSDRVYLDRSD--DGSISDEESLIEIALPTGHYVSNKFDEDE--EEVDDMSFCYQKLS------------A
           TGDL SESECADDNFTTTEESE+EWPFSDR      D  DGSISDEESLIEIALPTGHYVS+KFD+DE  E+ DDMSF  QKLS            A
Subjt:  ---TGDLSSESECADDNFTTTEESEMEWPFSDRVYLDRSD--DGSISDEESLIEIALPTGHYVSNKFDEDE--EEVDDMSFCYQKLS------------A

Query:  EINDINEEENLIEIDISIGSIKYSRFEIEA
        EINDINEEENLIEIDIS+GSIKYSRFEIEA
Subjt:  EINDINEEENLIEIDISIGSIKYSRFEIEA

A0A6J1FUA8 uncharacterized protein LOC1114484854.8e-5866.09Show/hide
Query:  MKFKIKVEDQMADLSFKTPFSWFISLTFFLLCLSFFGF--KFSSFLLTSTALIMSIFYFSISKKNPIPIHKFV-----QEKKEVKSFVSD-RKFSPA---
        MK KI  EDQMA    K P S FI LTFFLL L F GF   FSSF+LT TALIMS+ YFSISK NP P+HK +     QE+KE+    SD R FS A   
Subjt:  MKFKIKVEDQMADLSFKTPFSWFISLTFFLLCLSFFGF--KFSSFLLTSTALIMSIFYFSISKKNPIPIHKFV-----QEKKEVKSFVSD-RKFSPA---

Query:  TGDLSSESECADDNFTTTEESEMEWPFSDRV---YLDRSDDGSISDEESLIEIALPTGHYVSNKF-DEDEEEVDDMSFCYQKLS---------------A
        T DL SESECADDNFTTTEESE+EWPF DR     L RSDDGSISDEESLIEIALPTGHYVS+K  D+D+++ DDMSFC+QKLS               A
Subjt:  TGDLSSESECADDNFTTTEESEMEWPFSDRV---YLDRSDDGSISDEESLIEIALPTGHYVSNKF-DEDEEEVDDMSFCYQKLS---------------A

Query:  EINDINEEENLIEIDISIGSIKYSRFEIEA
        EINDINEEENLIEIDIS+GSIKYSRFEIEA
Subjt:  EINDINEEENLIEIDISIGSIKYSRFEIEA

A0A6J1JE34 uncharacterized protein LOC1114836942.8e-5866.38Show/hide
Query:  MKFKIKVEDQMADLSFKTPFSWFISLTFFLLCLSFFGF--KFSSFLLTSTALIMSIFYFSISKKNPIPIHKFV-----QEKKEVKSFVSD-RKFSPA---
        MK KI  EDQMA    K P S FI LTFFLL LSF GF   FSSFLLT TALIMS+ YFSISK NP P+HK +     +E+KE+    SD R FS A   
Subjt:  MKFKIKVEDQMADLSFKTPFSWFISLTFFLLCLSFFGF--KFSSFLLTSTALIMSIFYFSISKKNPIPIHKFV-----QEKKEVKSFVSD-RKFSPA---

Query:  TGDLSSESECADDNFTTTEESEMEWPFSDR---VYLDRSDDGSISDEESLIEIALPTGHYVSNKFDEDEEEVDDMSFCYQKLS---------------AE
        T DL SESECADDNFTTTEESE+EWPF DR     L RSDDGSISDEESLIEIALPTGHYV++K D+D+++ DDMSFC+QKLS               AE
Subjt:  TGDLSSESECADDNFTTTEESEMEWPFSDR---VYLDRSDDGSISDEESLIEIALPTGHYVSNKFDEDEEEVDDMSFCYQKLS---------------AE

Query:  INDINEEENLIEIDISIGSIKYSRFEIEA
        INDINEEENLIEIDIS+GSIKYSRFEIEA
Subjt:  INDINEEENLIEIDISIGSIKYSRFEIEA

SwissProt top hitse value%identityAlignment
No hits found
Arabidopsis top hitse value%identityAlignment
AT2G04480.1 unknown protein2.5e-1939.69Show/hide
Query:  MADLSFKTPFSWFISLTFFLLCLSFFGFKFSSFLLTSTALIMSIFYFSISKKNPIPIHKFVQEKKEVKSFVSDRKFSPATGDLSSESECADDNFTTTEES
        +A +  K PFSW   L   L  L   G +F   LLT TAL  S F+F IS    +P H  +Q  K+ +          AT D++ +SE   +N   T E 
Subjt:  MADLSFKTPFSWFISLTFFLLCLSFFGFKFSSFLLTSTALIMSIFYFSISKKNPIPIHKFVQEKKEVKSFVSDRKFSPATGDLSSESECADDNFTTTEES

Query:  EMEWPFSDRVYLDRSDDGSISDEESLIEIALPTGHYVSNKFDEDEEEV----DDMSFCYQKLSAEINDINEEENLIEIDISIGSIKYSRFEIEA
        +              DDG+I D+ESLIE++LP+GHY+ + ++ ++  +        F    L  EIND  EE+NLIEIDISIGSIKYSRFEI+A
Subjt:  EMEWPFSDRVYLDRSDDGSISDEESLIEIALPTGHYVSNKFDEDEEEV----DDMSFCYQKLSAEINDINEEENLIEIDISIGSIKYSRFEIEA

AT5G35870.1 unknown protein9.3e-1435.57Show/hide
Query:  LSFKTPFSWFISLTFFLLCLSFFGFKFSSFLLTSTALIMSIFYFSISKKNPIPIHKFVQEKKEVKSFVSDRKFSPATGDLSSESECADDNFTTTEESEME
        L FK P SW   L   L  L   G  FS  +LTS AL  S F+F +S + P                      +    DLS +    +   ++T      
Subjt:  LSFKTPFSWFISLTFFLLCLSFFGFKFSSFLLTSTALIMSIFYFSISKKNPIPIHKFVQEKKEVKSFVSDRKFSPATGDLSSESECADDNFTTTEESEME

Query:  WPFSDRVYLDRSDDGSISDEESLIEIALPTGHYVSNKFDEDEEEVDDM-------SFCYQKLSAEINDINEEENLIEIDISIGSIKYSRFEIEA
           +D V  +  DDG+I DEESLIE++LP+GHY+ + +     + D          F   +LSAE     E++NLIEIDISIGSIK SRF+I+A
Subjt:  WPFSDRVYLDRSDDGSISDEESLIEIALPTGHYVSNKFDEDEEEVDDM-------SFCYQKLSAEINDINEEENLIEIDISIGSIKYSRFEIEA


Sequences Show/hide sequences
CDS sequenceShow/hide CDS sequence
ATGAAGTTCAAAATCAAAGTTGAAGATCAAATGGCTGATCTTTCTTTCAAAACACCATTTTCATGGTTCATTTCTCTCACTTTTTTTCTCCTTTGTTTAAGTTTTTTTGG
CTTTAAATTCTCATCTTTTTTACTTACCTCAACAGCTCTAATTATGTCCATATTTTATTTTTCAATCTCCAAAAAAAACCCAATTCCGATTCACAAATTTGTCCAAGAAA
AAAAGGAAGTGAAATCTTTTGTCTCCGACCGGAAATTCTCGCCGGCGACCGGCGATTTGTCGTCGGAGAGTGAATGTGCCGACGATAATTTCACGACCACCGAGGAATCT
GAAATGGAATGGCCGTTTTCCGACCGGGTTTACCTGGACCGGTCCGACGACGGTTCGATTTCTGACGAGGAAAGCTTGATTGAAATTGCTCTCCCGACCGGGCATTACGT
CAGCAACAAGTTCGATGAGGACGAGGAAGAAGTAGACGACATGTCGTTTTGTTATCAGAAACTGTCGGCTGAAATAAATGACATCAATGAAGAGGAGAATTTGATCGAGA
TCGACATATCGATTGGCTCCATTAAATATTCAAGGTTCGAAATTGAAGCTTAA
mRNA sequenceShow/hide mRNA sequence
CAAGACAATTGATAACACTATTTAGCCTTTTCCTTTTTCTTTTTTGAATCTATGAAGTTCAAAATCAAAGTTGAAGATCAAATGGCTGATCTTTCTTTCAAAACACCATT
TTCATGGTTCATTTCTCTCACTTTTTTTCTCCTTTGTTTAAGTTTTTTTGGCTTTAAATTCTCATCTTTTTTACTTACCTCAACAGCTCTAATTATGTCCATATTTTATT
TTTCAATCTCCAAAAAAAACCCAATTCCGATTCACAAATTTGTCCAAGAAAAAAAGGAAGTGAAATCTTTTGTCTCCGACCGGAAATTCTCGCCGGCGACCGGCGATTTG
TCGTCGGAGAGTGAATGTGCCGACGATAATTTCACGACCACCGAGGAATCTGAAATGGAATGGCCGTTTTCCGACCGGGTTTACCTGGACCGGTCCGACGACGGTTCGAT
TTCTGACGAGGAAAGCTTGATTGAAATTGCTCTCCCGACCGGGCATTACGTCAGCAACAAGTTCGATGAGGACGAGGAAGAAGTAGACGACATGTCGTTTTGTTATCAGA
AACTGTCGGCTGAAATAAATGACATCAATGAAGAGGAGAATTTGATCGAGATCGACATATCGATTGGCTCCATTAAATATTCAAGGTTCGAAATTGAAGCTTAA
Protein sequenceShow/hide protein sequence
MKFKIKVEDQMADLSFKTPFSWFISLTFFLLCLSFFGFKFSSFLLTSTALIMSIFYFSISKKNPIPIHKFVQEKKEVKSFVSDRKFSPATGDLSSESECADDNFTTTEES
EMEWPFSDRVYLDRSDDGSISDEESLIEIALPTGHYVSNKFDEDEEEVDDMSFCYQKLSAEINDINEEENLIEIDISIGSIKYSRFEIEA