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Sed0028000 (gene) of Chayote v1 genome

Gene IDSed0028000
OrganismSechium edule (Chayote v1)
DescriptionRPM1-interacting protein 4-like
Genome locationLG04:4035046..4037371
RNA-Seq ExpressionSed0028000
SyntenySed0028000
Gene Ontology termsGO:0005886 - plasma membrane (cellular component)
InterPro domainsIPR008700 - RIN4, pathogenic type III effector avirulence factor Avr cleavage site
IPR040387 - RPM1-interacting protein 4/NOI4


Homology Show/hide homology
GenBank top hitse value%identityAlignment
KAG6573672.1 hypothetical protein SDJN03_27559, partial [Cucurbita argyrosperma subsp. sororia]3.1e-2372.84Show/hide
Query:  SCSFLQAHRGSSLPKFGEWDEKNPAAADGFTVIFERARDNKKNGGAPNDVIPKEN--QNQYQNKEHEPAKKNAKHKYPSKK
        S     AHRGSSLPKFGEWDEK+PAAA+GFTVIF+RARD KKNGG PN+VIP+EN  QNQY++K HE AKKN K KYP K+
Subjt:  SCSFLQAHRGSSLPKFGEWDEKNPAAADGFTVIFERARDNKKNGGAPNDVIPKEN--QNQYQNKEHEPAKKNAKHKYPSKK

XP_004135294.1 protein NOI4 [Cucumis sativus]1.4e-2067.47Show/hide
Query:  AHRGSSLPKFGEWDEKNPAAADGFTVIFERARDNKKNGGA---PNDVIPKENQNQYQNKEHEPAKKNAKHKYPSKKKVWHCCF
        A +G  LPKFG+WDE+NPAAA+GFTVIF RARDNKKNGGA   PN+VIP +NQ+Q    ++EPAKKN KHKYP K+K W  CF
Subjt:  AHRGSSLPKFGEWDEKNPAAADGFTVIFERARDNKKNGGA---PNDVIPKENQNQYQNKEHEPAKKNAKHKYPSKKKVWHCCF

XP_022945363.1 RPM1-interacting protein 4-like [Cucurbita moschata]5.1e-2673.81Show/hide
Query:  AHRGSSLPKFGEWDEKNPAAADGFTVIFERARDNKKNGGAPNDVIPKEN--QNQYQNKEHEPAKKNAKHKYPSKKKVWHCCFCW
        AHRGSSLPKFGEWDEK+PAAA+GFTVIF+RARD KKNGG PN+VIP+EN  QNQY++K HE AKKN K KYP K+K  H C C+
Subjt:  AHRGSSLPKFGEWDEKNPAAADGFTVIFERARDNKKNGGAPNDVIPKEN--QNQYQNKEHEPAKKNAKHKYPSKKKVWHCCFCW

XP_038892913.1 protein NOI4-like isoform X1 [Benincasa hispida]2.7e-2774.7Show/hide
Query:  AHRGSSLPKFGEWDEKNPAAADGFTVIFERARDNKKNG---GAPNDVIPKENQNQYQNKEHEPAKKNAKHKYPSKKKVWHCCF
        A +G  LPKFGEWDEKNPAAA+GFTVIF+RARDNKKNG   G PN+VIP++NQNQYQNK+HE AKKN +H+YP K+K WHCCF
Subjt:  AHRGSSLPKFGEWDEKNPAAADGFTVIFERARDNKKNG---GAPNDVIPKENQNQYQNKEHEPAKKNAKHKYPSKKKVWHCCF

XP_038892914.1 protein NOI4-like isoform X2 [Benincasa hispida]1.4e-2676.25Show/hide
Query:  GSSLPKFGEWDEKNPAAADGFTVIFERARDNKKNG---GAPNDVIPKENQNQYQNKEHEPAKKNAKHKYPSKKKVWHCCF
        G  LPKFGEWDEKNPAAA+GFTVIF+RARDNKKNG   G PN+VIP++NQNQYQNK+HE AKKN +H+YP K+K WHCCF
Subjt:  GSSLPKFGEWDEKNPAAADGFTVIFERARDNKKNG---GAPNDVIPKENQNQYQNKEHEPAKKNAKHKYPSKKKVWHCCF

TrEMBL top hitse value%identityAlignment
A0A0A0KTF9 AvrRpt-cleavage domain-containing protein7.0e-2167.47Show/hide
Query:  AHRGSSLPKFGEWDEKNPAAADGFTVIFERARDNKKNGGA---PNDVIPKENQNQYQNKEHEPAKKNAKHKYPSKKKVWHCCF
        A +G  LPKFG+WDE+NPAAA+GFTVIF RARDNKKNGGA   PN+VIP +NQ+Q    ++EPAKKN KHKYP K+K W  CF
Subjt:  AHRGSSLPKFGEWDEKNPAAADGFTVIFERARDNKKNGGA---PNDVIPKENQNQYQNKEHEPAKKNAKHKYPSKKKVWHCCF

A0A1S3BEY0 RPM1-interacting protein 4-like3.6e-1763.1Show/hide
Query:  AHRGSSLPKFGEWDEKNPAAADGFTVIFERARDNKKNG---GAPNDVIPKENQNQYQNKEHEPAKK-NAKHKYPSKKKVWHCCF
        A +G  LPKFG+WDEKNPAAA+GFTVIF RARDNKKNG   G PN+VIP +N+ Q Q    EPAK+   K KYP K+K W  CF
Subjt:  AHRGSSLPKFGEWDEKNPAAADGFTVIFERARDNKKNG---GAPNDVIPKENQNQYQNKEHEPAKK-NAKHKYPSKKKVWHCCF

A0A5D3CUX8 RPM1-interacting protein 4-like1.7e-1463.64Show/hide
Query:  AHRGSSLPKFGEWDEKNPAAADGFTVIFERARDNKKNG---GAPNDVIPKENQNQYQNKEHEPAKK-NAKHKYPSKK
        A +G  LPKFG+WDEKNPAAA+GFTVIF RARDNKKNG   G PN+VIP +N+ Q Q    EPAK+   K KYP K+
Subjt:  AHRGSSLPKFGEWDEKNPAAADGFTVIFERARDNKKNG---GAPNDVIPKENQNQYQNKEHEPAKK-NAKHKYPSKK

A0A6J1DEH9 RPM1-interacting protein 4-like1.2e-1255.84Show/hide
Query:  GSSLPKFGEWDEKNPAAADGFTVIFERARDNKKNGGAPND--VIPKENQNQYQNKEHEPAKKNAKHKYPSKKKVWHC
        G +LPKFGEWD K+PA+A+GFT+IF +ARDNKKNGG      VI ++ QNQ    +HE +KKN K+++P +KK W C
Subjt:  GSSLPKFGEWDEKNPAAADGFTVIFERARDNKKNGGAPND--VIPKENQNQYQNKEHEPAKKNAKHKYPSKKKVWHC

A0A6J1G0L7 RPM1-interacting protein 4-like2.5e-2673.81Show/hide
Query:  AHRGSSLPKFGEWDEKNPAAADGFTVIFERARDNKKNGGAPNDVIPKEN--QNQYQNKEHEPAKKNAKHKYPSKKKVWHCCFCW
        AHRGSSLPKFGEWDEK+PAAA+GFTVIF+RARD KKNGG PN+VIP+EN  QNQY++K HE AKKN K KYP K+K  H C C+
Subjt:  AHRGSSLPKFGEWDEKNPAAADGFTVIFERARDNKKNGGAPNDVIPKEN--QNQYQNKEHEPAKKNAKHKYPSKKKVWHCCFCW

SwissProt top hitse value%identityAlignment
O22633 Protein NOI41.3e-0845.45Show/hide
Query:  RGSSLPKFGEWDEKNPAAADGFTVIFERARDNKKNGGAPNDVIPKENQNQYQNKEHEPAKKNAKHKYPSKKKVWHCC
        +G  LPKFGEWD  +PA+A+GFTVIF +ARD KK GG P     K ++   ++   +P+K       P  KK W CC
Subjt:  RGSSLPKFGEWDEKNPAAADGFTVIFERARDNKKNGGAPNDVIPKENQNQYQNKEHEPAKKNAKHKYPSKKKVWHCC

Q8GYN5 RPM1-interacting protein 48.9e-0553.12Show/hide
Query:  LPKFGEWDEKNPAAADGFTVIFERARDNKKNG
        +PKFG+WDE NP++ADG+T IF + R+ + +G
Subjt:  LPKFGEWDEKNPAAADGFTVIFERARDNKKNG

Arabidopsis top hitse value%identityAlignment
AT2G04410.1 RPM1-interacting protein 4 (RIN4) family protein3.6e-0945.57Show/hide
Query:  AHRGSSLPKFGEWDEKNPAAADGFTVIFERARDNKKNGGAPNDVIPKENQNQYQNKEHEPAKKNAKHKYPSKKKVWHCC
        A +G  LPKFGEWD  +P++A+GFTVIF +AR+ KK GG  +   P +++  Y NK  E  +K      P+KK  W CC
Subjt:  AHRGSSLPKFGEWDEKNPAAADGFTVIFERARDNKKNGGAPNDVIPKENQNQYQNKEHEPAKKNAKHKYPSKKKVWHCC

AT3G48450.1 RPM1-interacting protein 4 (RIN4) family protein2.1e-0940.96Show/hide
Query:  HRGSSLPKFGEWDEKNPAAADGFTVIFERARDNKKN-----GGAPNDVIPKENQNQYQNKEHEPAKKNAKH-KYPSKKKVWHC
        +R   LPKFGEWD  NP +A+GFTVIF +ARD+KK       G  + V P  N+   +N  +     + +H + P  KK W C
Subjt:  HRGSSLPKFGEWDEKNPAAADGFTVIFERARDNKKN-----GGAPNDVIPKENQNQYQNKEHEPAKKNAKH-KYPSKKKVWHC

AT5G55850.1 RPM1-interacting protein 4 (RIN4) family protein8.0e-0948.33Show/hide
Query:  RGSSLPKFGEWDEKNPAAADGFTVIFERARDNKKNGGAPNDVIPKENQNQYQNKEHEPAK
        +G  LPKFGEWD  +PA+A+GFTVIF +ARD KK GG P     K ++   ++   +P+K
Subjt:  RGSSLPKFGEWDEKNPAAADGFTVIFERARDNKKNGGAPNDVIPKENQNQYQNKEHEPAK

AT5G55850.3 RPM1-interacting protein 4 (RIN4) family protein9.4e-1045.45Show/hide
Query:  RGSSLPKFGEWDEKNPAAADGFTVIFERARDNKKNGGAPNDVIPKENQNQYQNKEHEPAKKNAKHKYPSKKKVWHCC
        +G  LPKFGEWD  +PA+A+GFTVIF +ARD KK GG P     K ++   ++   +P+K       P  KK W CC
Subjt:  RGSSLPKFGEWDEKNPAAADGFTVIFERARDNKKNGGAPNDVIPKENQNQYQNKEHEPAKKNAKHKYPSKKKVWHCC

AT5G63270.1 RPM1-interacting protein 4 (RIN4) family protein2.0e-1249.32Show/hide
Query:  HRGSSLPKFGEWDEKNPAAADGFTVIFERARDNKK----NGGAPNDVI-PKENQNQYQNKEHEPAKKNAKHKY
        ++G  LPKFGEWD  NPA+A+GFTVIF +A D KK    +G  PN ++ P+ NQN  QN  H      AK+K+
Subjt:  HRGSSLPKFGEWDEKNPAAADGFTVIFERARDNKK----NGGAPNDVI-PKENQNQYQNKEHEPAKKNAKHKY


Sequences Show/hide sequences
CDS sequenceShow/hide CDS sequence
ATGAAGTTGAAGTTGAATCTGGCATCGGTTTCTTTTTTATTTCTGAGTTGTTCTTTTTTGCAGGCTCATAGGGGTTCATCTCTGCCCAAGTTTGGCGAGTGGGATGAAAA
GAATCCTGCTGCAGCGGATGGGTTCACGGTGATTTTCGAAAGGGCTCGAGATAATAAGAAGAATGGAGGAGCTCCAAATGATGTGATTCCAAAGGAAAACCAAAACCAAT
ACCAAAATAAAGAACATGAACCTGCTAAGAAGAATGCCAAGCACAAGTATCCAAGTAAAAAGAAAGTATGGCATTGCTGCTTCTGCTGGTAG
mRNA sequenceShow/hide mRNA sequence
GACGTTCCAATATTTAATATGCATATATTTTTCAATTTCGTTTTTTTTTTCTTTTGAATTTTAATTGGTTGGAGGATTCAATTTTATTTCGTCACGGACAGTTATAACCA
GTGACGTATTGATCTTTATGTCATTTTTTTTTGGTTAATGTTTGAAAATGTGTGCATTGAAGGCTAAACGTGGCCATATTTTATAGCAATGCGACTTTTATAAATTATTG
GTTTACTTCTTCTAATTCTGTCAATTCGTTGAAAAGGATGGGTTATAATTCTGTCAAGGGGTTATTTAAAAAACATTATGTCAATTCGTTGAAAAATAAAACGTTTTGAC
CCTAGAAGTATCGAAACAAAACTACAATTTATTGTGGATATGGCTAGTGTTGTAATAGGCTGAAGAATGATACAGAATCAAATTAGATTTAATAGATTTGGTATATAGCC
ATAACCCTTTACATTATTAGAAAAAGAGCAGCCATATAATTGTCTAATGTATTGTTGTCATAATTTAATATCTTCTCTTGCTTGTTGAATTTACAAATCCTATCCTCATT
TGGCCGTCGTTATGAGCCGCCTATTTTGAGCCCTTCCATTCTTCTTCTTCTCATCGCAACGGTAAAACTCCTTTACGCGTTTCATTAAGTGGACTTTGTAAGGCCACGTC
CAAGTAACCAAGTCCTCTATAAGAAGAAACCTCCATTTCCTCTTCATCTTCAGCTCAAATACTCTGCCATTTCCCATTTCCTCAAAACTGCAATCTTTCAGATATGACAT
CAGTAAGATTCCATTGTGCCCATTTCTGTGTTTCTAATTCTTTGTTGCCTTGCTTTCTTCATTGGTTTTGCTGGTTTTCTTGGTGGGATGAAGTTGAAGTTGAATCTGGC
ATCGGTTTCTTTTTTATTTCTGAGTTGTTCTTTTTTGCAGGCTCATAGGGGTTCATCTCTGCCCAAGTTTGGCGAGTGGGATGAAAAGAATCCTGCTGCAGCGGATGGGT
TCACGGTGATTTTCGAAAGGGCTCGAGATAATAAGAAGAATGGAGGAGCTCCAAATGATGTGATTCCAAAGGAAAACCAAAACCAATACCAAAATAAAGAACATGAACCT
GCTAAGAAGAATGCCAAGCACAAGTATCCAAGTAAAAAGAAAGTATGGCATTGCTGCTTCTGCTGGTAGGTACTTTTTGGCTCTGAAAGAACAAAAATCTGCTGTTTGTG
GTGGCTTTTTTAGTGCAGAGTTCGATGGTGTAGATTCGATTGTTTATGTATACGGTTTGCCCTTTGGTGTCTTGTTTTGGAAAAATTTGATGGGTTTTTTATTCTGTTCA
TTTAAGCTTATTCTTTTGTACTTAATACATTGTTTATAGAAAGGGAAAATTGAGCTATTCTTTCGTTGTATAAAAGGTTTTGGAGTTGGGGATTCTTTTGTCATGTTTCT
TTTTATATGGTCTTGTTTGTTCACCTAGATAGGTCTATTTGGCTGGCTTGAAATGGTCAAATTTGATCATCTAGCCTATCTTTTTTTCTTTGAAAAAATGTAGCTTGTCC
TCACTAATCGTACAGTATTGG
Protein sequenceShow/hide protein sequence
MKLKLNLASVSFLFLSCSFLQAHRGSSLPKFGEWDEKNPAAADGFTVIFERARDNKKNGGAPNDVIPKENQNQYQNKEHEPAKKNAKHKYPSKKKVWHCCFCW