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Sed0028005 (gene) of Chayote v1 genome

Gene IDSed0028005
OrganismSechium edule (Chayote v1)
DescriptionRNase H domain-containing protein
Genome locationLG06:40334476..40335937
RNA-Seq ExpressionSed0028005
SyntenySed0028005
Gene Ontology termsGO:0003676 - nucleic acid binding (molecular function)
GO:0004523 - RNA-DNA hybrid ribonuclease activity (molecular function)
InterPro domainsIPR002156 - Ribonuclease H domain
IPR012337 - Ribonuclease H-like superfamily
IPR036397 - Ribonuclease H superfamily
IPR044730 - Ribonuclease H-like domain, plant type


Homology Show/hide homology
GenBank top hitse value%identityAlignment
VVA35559.1 Hypothetical predicted protein [Prunus dulcis]5.6e-1134.21Show/hide
Query:  KQYLEDFRRASSCLSL--TSSSHKALTKWKPPDQQNYKINVDATIHSDEKRCGIGIITRNWRGEAMFSISKPIFGIVDTEIAEALAIRFGVESAIDLGFR
        ++  E+F +A +C SL  T      +  W+ P  Q +KINVD  + +D+   G+G++ R+ RGE + + +KP+ G+    + E  AIRFG++ A+DLG +
Subjt:  KQYLEDFRRASSCLSL--TSSSHKALTKWKPPDQQNYKINVDATIHSDEKRCGIGIITRNWRGEAMFSISKPIFGIVDTEIAEALAIRFGVESAIDLGFR

Query:  KIEVEADALRVVHL
         I +E+DA   + +
Subjt:  KIEVEADALRVVHL

XP_023904550.1 uncharacterized protein LOC112016266 [Quercus suber]5.6e-1139.81Show/hide
Query:  YLEDFRRASSCLSLTSSSHKALTKWKPPDQQNYKINVDATIHSDEKRCGIGIITRNWRGEAMFSISKPIFGIVDTEIAEALAIRFGVESAIDLGFRKIEV
        YL ++  A   L+ TS     L  WKPP  Q YK+N DA + ++    GIG++ RN  GE M ++S     + D+E AEA+A R  VE AID GF ++ +
Subjt:  YLEDFRRASSCLSLTSSSHKALTKWKPPDQQNYKINVDATIHSDEKRCGIGIITRNWRGEAMFSISKPIFGIVDTEIAEALAIRFGVESAIDLGFRKIEV

Query:  EADALRVV
        E D + V+
Subjt:  EADALRVV

XP_023907618.1 uncharacterized protein LOC112019310 [Quercus suber]2.5e-1132.46Show/hide
Query:  SSSHKALTKWKPPDQQNYKINVDATIHSDEKRCGIGIITRNWRGEAMFSISKPIFGIVDTEIAEALAIRFGVESAIDLGFRKIEVEADALRVVHLLQDSG
        S+   A+ +W PP ++ YK+N DA +       G+G++ R+WRG  + ++S+ +      E+AEALA +  V+ A ++ F ++ VE D  RVV  LQ  G
Subjt:  SSSHKALTKWKPPDQQNYKINVDATIHSDEKRCGIGIITRNWRGEAMFSISKPIFGIVDTEIAEALAIRFGVESAIDLGFRKIEVEADALRVVHLLQDSG

Query:  TLCMELLQRMVFDS
          C+++   ++ D+
Subjt:  TLCMELLQRMVFDS

XP_030923859.1 uncharacterized protein LOC115950759 [Quercus lobata]5.6e-1132.93Show/hide
Query:  ALTKWKPPDQQNYKINVDATIHSDEKRCGIGIITRNWRGEAMFSISKPIFGIVDTEIAEALAIRFGVESAIDLGFRKIEVEAD---ALRVVHLLQDS---
        AL  + PPD   YK+N DAT+ SD    G+G++ RN  G+ M ++S     ++D+E AE LA R  +E AI++GF  + VE D   A+R +   QD    
Subjt:  ALTKWKPPDQQNYKINVDATIHSDEKRCGIGIITRNWRGEAMFSISKPIFGIVDTEIAEALAIRFGVESAIDLGFRKIEVEAD---ALRVVHLLQDS---

Query:  -GTLCMEL--LQRMVFDSEFQMKQYVARGGGTSTR----GRQFVGLKVVFSQFVIECKMNMDLCTIE
         G L  ++  L R +   EF+  ++ A G   S      GR+  G + +  + +  C     LC  E
Subjt:  -GTLCMEL--LQRMVFDSEFQMKQYVARGGGTSTR----GRQFVGLKVVFSQFVIECKMNMDLCTIE

XP_030930796.1 uncharacterized protein LOC115956614 [Quercus lobata]8.6e-1239.29Show/hide
Query:  KQYLEDFRRASSCLSLTSSSHKA--LTKWKPPDQQNYKINVDATIHSDEKRCGIGIITRNWRGEAMFSISKPIFGIVDTEIAEALAIRFGVESAIDLGFR
        K +L+++R A + LS+ +SS       +W PP    YK+NVDAT+    K  G+G + RN  GE M +++     + D+E AEALA R  VE A++ GFR
Subjt:  KQYLEDFRRASSCLSLTSSSHKA--LTKWKPPDQQNYKINVDATIHSDEKRCGIGIITRNWRGEAMFSISKPIFGIVDTEIAEALAIRFGVESAIDLGFR

Query:  KIEVEADALRVV
        +I +E D   V+
Subjt:  KIEVEADALRVV

TrEMBL top hitse value%identityAlignment
A0A2N9FH97 Uncharacterized protein6.4e-1335.54Show/hide
Query:  LKQYLEDFRRASSCLSLTSSSH--KALTKWKPPDQQNYKINVDATIHSDEKRCGIGIITRNWRGEAMFSISKPIFGIVDTEIAEALAIRFGVESAIDLGF
        +++++E   R +     TS+ +  +  T WKPP+ +  KIN D  + +D +  G+G+I RN +G  M S+S+ I      E  EA A R  V  AIDLGF
Subjt:  LKQYLEDFRRASSCLSLTSSSH--KALTKWKPPDQQNYKINVDATIHSDEKRCGIGIITRNWRGEAMFSISKPIFGIVDTEIAEALAIRFGVESAIDLGF

Query:  RKIEVEADALRVVHLLQDSGT
        +++E+E D++ +V  L  S T
Subjt:  RKIEVEADALRVVHLLQDSGT

A0A2N9GXY5 Uncharacterized protein4.2e-1233.58Show/hide
Query:  SSSHKALTKWKPPDQQNYKINVDATIHSDEKRCGIGIITRNWRGEAMFSISKPIFGIVDTEIAEALAIRFGVESAIDLGFRKIEVEADALRVVHLLQDSG
        S+    +TKW PP    YK+N D  I ++    G+G I RN RGEAM S+ + I      E  EA A R  V   +DLG R++++E D+L+++  L+ + 
Subjt:  SSSHKALTKWKPPDQQNYKINVDATIHSDEKRCGIGIITRNWRGEAMFSISKPIFGIVDTEIAEALAIRFGVESAIDLGFRKIEVEADALRVVHLLQDSG

Query:  TLCMELLQRMVFDSE--------FQMKQYVARGGGTS
          C  L   ++ +++        FQ   +V R G TS
Subjt:  TLCMELLQRMVFDSE--------FQMKQYVARGGGTS

A0A2N9HF86 RNase H domain-containing protein4.2e-1239.58Show/hide
Query:  TKWKPPDQQNYKINVDATIHSDEKRCGIGIITRNWRGEAMFSISKPIFGIVDTEIAEALAIRFGVESAIDLGFRKIEVEADALRVVHLLQDSGTLC
        TKWKPP    YK+N D  +  +    GIG+I RN RGE M S+   I      E  EA A R   + AIDLGF+++++E D++ +V  L+++   C
Subjt:  TKWKPPDQQNYKINVDATIHSDEKRCGIGIITRNWRGEAMFSISKPIFGIVDTEIAEALAIRFGVESAIDLGFRKIEVEADALRVVHLLQDSGTLC

A0A7N2N391 RNase H domain-containing protein3.1e-1546.79Show/hide
Query:  LEDFRRASSCLS--LTSSSHKALTKWKPPDQQNYKINVDATIHSDEKRCGIGIITRNWRGEAMFSISKPIFGIVDTEIAEALAIRFGVESAIDLGFRKIE
        L D+R A S LS  L SSS + L +WKPP   NYK+N+DATI   +K  G G++ RN RGE M ++S     + +++ AEALA R  VE A+DLGFR + 
Subjt:  LEDFRRASSCLS--LTSSSHKALTKWKPPDQQNYKINVDATIHSDEKRCGIGIITRNWRGEAMFSISKPIFGIVDTEIAEALAIRFGVESAIDLGFRKIE

Query:  VEADALRVV
        +E D + V+
Subjt:  VEADALRVV

A0A7N2RFA1 Uncharacterized protein8.4e-1338.84Show/hide
Query:  FDLKQYLEDFRRASSCLSLTSSSHKALTKWKPPDQQNYKINVDATIHSDEKRCGIGIITRNWRGEAMFSISKPIFGIVDTEIAEALAIRFGVESAIDLGF
        FDL   L +FR+A   L++ S +   +++W PP    +K+N DA I  D K  GIG I RN RGE M ++S     ++D+  AE LA R  +E AID+GF
Subjt:  FDLKQYLEDFRRASSCLSLTSSSHKALTKWKPPDQQNYKINVDATIHSDEKRCGIGIITRNWRGEAMFSISKPIFGIVDTEIAEALAIRFGVESAIDLGF

Query:  RKIEVEADALRVVHLLQDSGT
         ++ +E D+ +V++ L+ + T
Subjt:  RKIEVEADALRVVHLLQDSGT

SwissProt top hitse value%identityAlignment
No hits found
Arabidopsis top hitse value%identityAlignment
AT2G34320.1 Polynucleotidyl transferase, ribonuclease H-like superfamily protein2.8e-0828.39Show/hide
Query:  LKQYLEDFRRASSCLSLTSSS------HKALTKWKPPDQQNYKINVDATIHSDEKRCGIGIITRNWRGEAMFSISKPIFGIVDTEIAEALAIRFGVESAI
        L++ +EDF   S+   L   +           +WK P  Q  K N DAT   +  RCGIG I RN  G  ++  ++ +    +   AE  A+R+ V +  
Subjt:  LKQYLEDFRRASSCLSLTSSS------HKALTKWKPPDQQNYKINVDATIHSDEKRCGIGIITRNWRGEAMFSISKPIFGIVDTEIAEALAIRFGVESAI

Query:  DLGFRKIEVEADALRVVHLLQDSG---TL--CMELLQRMVFDSEFQMKQYVARGG
           +++I  E+DA  +V+LL       TL   +E +Q+++   E    ++  RGG
Subjt:  DLGFRKIEVEADALRVVHLLQDSG---TL--CMELLQRMVFDSEFQMKQYVARGG

AT3G23320.1 Polynucleotidyl transferase, ribonuclease H-like superfamily protein1.2e-0625Show/hide
Query:  DLKQYLEDFRRASSCLSLTSSSHKALTKWKPPDQQNYKINVDATIHSDEKRCGIGIITRNWRGEAMFSISKPIFGIVDTEIAEALAIRFGVESAIDLGFR
        D K++L+   +    +    +      KW+ P  +  K N D + H+  +  G+  I RN +G  +        G    + AE  A+ + ++ A DLG+R
Subjt:  DLKQYLEDFRRASSCLSLTSSSHKALTKWKPPDQQNYKINVDATIHSDEKRCGIGIITRNWRGEAMFSISKPIFGIVDTEIAEALAIRFGVESAIDLGFR

Query:  KIEVEADALRVVHLLQDSGT
        ++E E D + V  L+++  T
Subjt:  KIEVEADALRVVHLLQDSGT

AT4G29090.1 Ribonuclease H-like superfamily protein5.5e-0929.57Show/hide
Query:  LEDFR---RASSCLSLTSSSHKALTKWKPPDQQNYKINVDATIHSDEKRCGIGIITRNWRGEAMFSISKPIFGIVDTEIAEALAIRFGVESAIDLGFRKI
        LE++R    A SC +    +  +  +W+PP  Q  K N DAT + D +RCGIG + RN +GE  +  ++ +  +     AE  A+R+ V S     +  +
Subjt:  LEDFR---RASSCLSLTSSSHKALTKWKPPDQQNYKINVDATIHSDEKRCGIGIITRNWRGEAMFSISKPIFGIVDTEIAEALAIRFGVESAIDLGFRKI

Query:  EVEADALRVVHLLQD
          E+D+  ++ +L +
Subjt:  EVEADALRVVHLLQD


Sequences Show/hide sequences
CDS sequenceShow/hide CDS sequence
ATGTTGGAGGTTGAAGACGACTTTGATTTGAAGCAATATCTAGAGGACTTCAGAAGGGCATCCTCTTGTCTTTCATTGACTTCGAGTTCTCATAAGGCTCTTACAAAGTG
GAAGCCTCCTGATCAACAAAATTACAAAATAAATGTTGATGCAACCATTCATTCAGATGAAAAACGATGTGGTATTGGGATCATTACTAGAAATTGGAGGGGGGAAGCTA
TGTTTTCGATTTCTAAGCCAATCTTTGGGATAGTGGACACTGAAATTGCAGAAGCACTGGCCATTAGATTTGGTGTGGAGTCCGCAATTGATCTTGGCTTTAGGAAAATT
GAAGTGGAGGCTGATGCTCTGCGAGTGGTGCATCTTCTCCAAGATTCTGGGACTTTGTGCATGGAGTTATTGCAGAGGATGGTGTTTGATTCCGAGTTTCAAATGAAGCA
GTATGTTGCGAGAGGAGGAGGGACTAGTACAAGAGGTAGACAATTTGTGGGCCTGAAGGTAGTTTTTTCCCAATTTGTGATTGAATGTAAGATGAATATGGACCTTTGTA
CTATTGAAGTAATGGAATCTGAATGTGTCTTCTGCTTCCTAACGGTGCACCCTGGTATACAGGGTCGCCGAGTATTATGA
mRNA sequenceShow/hide mRNA sequence
ATGTTGGAGGTTGAAGACGACTTTGATTTGAAGCAATATCTAGAGGACTTCAGAAGGGCATCCTCTTGTCTTTCATTGACTTCGAGTTCTCATAAGGCTCTTACAAAGTG
GAAGCCTCCTGATCAACAAAATTACAAAATAAATGTTGATGCAACCATTCATTCAGATGAAAAACGATGTGGTATTGGGATCATTACTAGAAATTGGAGGGGGGAAGCTA
TGTTTTCGATTTCTAAGCCAATCTTTGGGATAGTGGACACTGAAATTGCAGAAGCACTGGCCATTAGATTTGGTGTGGAGTCCGCAATTGATCTTGGCTTTAGGAAAATT
GAAGTGGAGGCTGATGCTCTGCGAGTGGTGCATCTTCTCCAAGATTCTGGGACTTTGTGCATGGAGTTATTGCAGAGGATGGTGTTTGATTCCGAGTTTCAAATGAAGCA
GTATGTTGCGAGAGGAGGAGGGACTAGTACAAGAGGTAGACAATTTGTGGGCCTGAAGGTAGTTTTTTCCCAATTTGTGATTGAATGTAAGATGAATATGGACCTTTGTA
CTATTGAAGTAATGGAATCTGAATGTGTCTTCTGCTTCCTAACGGTGCACCCTGGTATACAGGGTCGCCGAGTATTATGA
Protein sequenceShow/hide protein sequence
MLEVEDDFDLKQYLEDFRRASSCLSLTSSSHKALTKWKPPDQQNYKINVDATIHSDEKRCGIGIITRNWRGEAMFSISKPIFGIVDTEIAEALAIRFGVESAIDLGFRKI
EVEADALRVVHLLQDSGTLCMELLQRMVFDSEFQMKQYVARGGGTSTRGRQFVGLKVVFSQFVIECKMNMDLCTIEVMESECVFCFLTVHPGIQGRRVL