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Sed0028058 (gene) of Chayote v1 genome

Gene IDSed0028058
OrganismSechium edule (Chayote v1)
DescriptionC3H1-type domain-containing protein
Genome locationLG05:12757246..12757809
RNA-Seq ExpressionSed0028058
SyntenySed0028058
Gene Ontology termsNA
InterPro domainsNA


Homology Show/hide homology
GenBank top hitse value%identityAlignment
GFZ20708.1 hypothetical protein Acr_28g0014130 [Actinidia rufa]1.3e-0648.19Show/hide
Query:  MDPTSSKIDPSEFVPTPSELRPLQKELEEKTKKIEEMKKMIEDTKVCLMDKEMKVSEKEMEDFKALCEKYNSLRKEYNETLAK
        M+  SS + P   V   SEL  LQKE E+K +KI+++K+ I DTK+ L  K+ +V E++ME F+AL E+YN++R EYN  LAK
Subjt:  MDPTSSKIDPSEFVPTPSELRPLQKELEEKTKKIEEMKKMIEDTKVCLMDKEMKVSEKEMEDFKALCEKYNSLRKEYNETLAK

KAG7035874.1 hypothetical protein SDJN02_02673, partial [Cucurbita argyrosperma subsp. argyrosperma]2.1e-1465.06Show/hide
Query:  MDPTSSKIDPSEFVPTPSELRPLQKELEEKTKKIEEMKKMIEDTKVCLMDKEMKVSEKEMEDFKALCEKYNSLRKEYNETLAK
        MDP+SSKIDPSEF P   EL  LQKE+E KTKKI+EMKK IE  K+ L  +E K S +EME  K LCE++NSLRKEY ETL K
Subjt:  MDPTSSKIDPSEFVPTPSELRPLQKELEEKTKKIEEMKKMIEDTKVCLMDKEMKVSEKEMEDFKALCEKYNSLRKEYNETLAK

KGN48117.1 hypothetical protein Csa_003321 [Cucumis sativus]2.3e-1665.88Show/hide
Query:  MDPTSSKIDPSEFVPTPSELRPLQKELEEKTKKIEEMKKMIEDTKVCLMDKE--MKVSEKEMEDFKALCEKYNSLRKEYNETLAK
        MDP++SKIDPSEF   PSEL+ L++ELEEK KK+EEMKK IE  KVCL  K+  +K S KEME FK LC KY SLRKEYNE   K
Subjt:  MDPTSSKIDPSEFVPTPSELRPLQKELEEKTKKIEEMKKMIEDTKVCLMDKE--MKVSEKEMEDFKALCEKYNSLRKEYNETLAK

XP_022958532.1 uncharacterized protein LOC111459736 [Cucurbita moschata]7.1e-1063.89Show/hide
Query:  EFVPTPSELRPLQKELEEKTKKIEEMKKMIEDTKVCLMDKEMKVSEKEMEDFKALCEKYNSLRKEYNETLAK
        EF P  SEL  LQKE+E KTKKI+EMKK IE  K+ L  +E K S +EME  K LCE+YNSLRKEY ETL K
Subjt:  EFVPTPSELRPLQKELEEKTKKIEEMKKMIEDTKVCLMDKEMKVSEKEMEDFKALCEKYNSLRKEYNETLAK

XP_034688913.1 uveal autoantigen with coiled-coil domains and ankyrin repeats-like [Vitis riparia]3.6e-0654.55Show/hide
Query:  SELRPLQKELEEKTKKIEEMKKMIEDTKVCLMDKEMKVSEKEMEDFKALCEKYNSLRKEYNETLAK
        SEL  LQK+ EEKT KI+E+K+ IE  K+ L  ++ ++ E++ME FK L EKYNSLR EYN  LA+
Subjt:  SELRPLQKELEEKTKKIEEMKKMIEDTKVCLMDKEMKVSEKEMEDFKALCEKYNSLRKEYNETLAK

TrEMBL top hitse value%identityAlignment
A0A0A0KIA6 Uncharacterized protein1.1e-1665.88Show/hide
Query:  MDPTSSKIDPSEFVPTPSELRPLQKELEEKTKKIEEMKKMIEDTKVCLMDKE--MKVSEKEMEDFKALCEKYNSLRKEYNETLAK
        MDP++SKIDPSEF   PSEL+ L++ELEEK KK+EEMKK IE  KVCL  K+  +K S KEME FK LC KY SLRKEYNE   K
Subjt:  MDPTSSKIDPSEFVPTPSELRPLQKELEEKTKKIEEMKKMIEDTKVCLMDKE--MKVSEKEMEDFKALCEKYNSLRKEYNETLAK

A0A438KG72 Uncharacterized protein1.8e-0654.55Show/hide
Query:  SELRPLQKELEEKTKKIEEMKKMIEDTKVCLMDKEMKVSEKEMEDFKALCEKYNSLRKEYNETLAK
        SEL  LQK+ EEKT KI+E+K+ IE  K+ L  ++ ++ E++ME FK L EKYNSLR EYN  LA+
Subjt:  SELRPLQKELEEKTKKIEEMKKMIEDTKVCLMDKEMKVSEKEMEDFKALCEKYNSLRKEYNETLAK

A0A6J1H234 uncharacterized protein LOC1114597363.4e-1063.89Show/hide
Query:  EFVPTPSELRPLQKELEEKTKKIEEMKKMIEDTKVCLMDKEMKVSEKEMEDFKALCEKYNSLRKEYNETLAK
        EF P  SEL  LQKE+E KTKKI+EMKK IE  K+ L  +E K S +EME  K LCE+YNSLRKEY ETL K
Subjt:  EFVPTPSELRPLQKELEEKTKKIEEMKKMIEDTKVCLMDKEMKVSEKEMEDFKALCEKYNSLRKEYNETLAK

A0A7J0HCC5 Uncharacterized protein6.1e-0748.19Show/hide
Query:  MDPTSSKIDPSEFVPTPSELRPLQKELEEKTKKIEEMKKMIEDTKVCLMDKEMKVSEKEMEDFKALCEKYNSLRKEYNETLAK
        M+  SS + P   V   SEL  LQKE E+K +KI+++K+ I DTK+ L  K+ +V E++ME F+AL E+YN++R EYN  LAK
Subjt:  MDPTSSKIDPSEFVPTPSELRPLQKELEEKTKKIEEMKKMIEDTKVCLMDKEMKVSEKEMEDFKALCEKYNSLRKEYNETLAK

D7SNF6 Uncharacterized protein1.8e-0654.55Show/hide
Query:  SELRPLQKELEEKTKKIEEMKKMIEDTKVCLMDKEMKVSEKEMEDFKALCEKYNSLRKEYNETLAK
        SEL  LQK+ EEKT KI+E+K+ IE  K+ L  ++ ++ E++ME FK L EKYNSLR EYN  LA+
Subjt:  SELRPLQKELEEKTKKIEEMKKMIEDTKVCLMDKEMKVSEKEMEDFKALCEKYNSLRKEYNETLAK

SwissProt top hitse value%identityAlignment
No hits found
Arabidopsis top hitse value%identityAlignment
No hits found

Sequences Show/hide sequences
CDS sequenceShow/hide CDS sequence
ATGGATCCAACAAGTTCAAAAATTGACCCATCAGAGTTCGTGCCGACACCTTCAGAGCTAAGACCCCTGCAAAAAGAACTCGAGGAGAAGACGAAGAAAATCGAAGAGAT
GAAGAAAATGATTGAAGATACGAAAGTTTGTTTGATGGATAAGGAAATGAAGGTTTCGGAGAAAGAAATGGAAGATTTTAAGGCATTGTGTGAAAAATACAACAGCTTGA
GAAAGGAATACAATGAAACATTAGCCAAATAG
mRNA sequenceShow/hide mRNA sequence
ATGGATCCAACAAGTTCAAAAATTGACCCATCAGAGTTCGTGCCGACACCTTCAGAGCTAAGACCCCTGCAAAAAGAACTCGAGGAGAAGACGAAGAAAATCGAAGAGAT
GAAGAAAATGATTGAAGATACGAAAGTTTGTTTGATGGATAAGGAAATGAAGGTTTCGGAGAAAGAAATGGAAGATTTTAAGGCATTGTGTGAAAAATACAACAGCTTGA
GAAAGGAATACAATGAAACATTAGCCAAATAG
Protein sequenceShow/hide protein sequence
MDPTSSKIDPSEFVPTPSELRPLQKELEEKTKKIEEMKKMIEDTKVCLMDKEMKVSEKEMEDFKALCEKYNSLRKEYNETLAK