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Sed0028129 (gene) of Chayote v1 genome

Gene IDSed0028129
OrganismSechium edule (Chayote v1)
DescriptionPSII 6.1 kDa protein
Genome locationLG09:34525113..34526873
RNA-Seq ExpressionSed0028129
SyntenySed0028129
Gene Ontology termsGO:0042549 - photosystem II stabilization (biological process)
GO:0009523 - photosystem II (cellular component)
GO:0009535 - chloroplast thylakoid membrane (cellular component)
GO:0016021 - integral component of membrane (cellular component)
InterPro domainsIPR009806 - Photosystem II PsbW, class 2


Homology Show/hide homology
GenBank top hitse value%identityAlignment
KAA0059706.1 photosystem II reaction center W protein [Cucumis melo var. makuwa]1.5e-5288.41Show/hide
Query:  MAAVTSAAVAAVRTSLVQNRP-LTAASSAPILLGLPSLRKK-GVRCTMEGKANGEVENKSSNSGMGASLIAAACAVTMSSPAMALVDERLSTEGTGLPFG
        MAAVTSAA AAVRTSLVQNRP L +AS AP LLGLP+L KK GVRC+MEGK NGEVENKSSN  MGASLIAAACA TMSSPAMALVDERLSTEGTGLPFG
Subjt:  MAAVTSAAVAAVRTSLVQNRP-LTAASSAPILLGLPSLRKK-GVRCTMEGKANGEVENKSSNSGMGASLIAAACAVTMSSPAMALVDERLSTEGTGLPFG

Query:  LSNNLLGWILLGGFGLIWSFYIVYTSTLEEDEESGLSL
        LSNNLLGWILLG FGLIW+FYIVYTSTLEEDEESGLSL
Subjt:  LSNNLLGWILLGGFGLIWSFYIVYTSTLEEDEESGLSL

XP_004146953.1 photosystem II reaction center W protein, chloroplastic isoform X2 [Cucumis sativus]1.5e-5287.59Show/hide
Query:  MAAVTSAAVAAVRTSLVQNRPLTAASSAPILLGLPSLRKK-GVRCTMEGKANGEVENKSSNSGMGASLIAAACAVTMSSPAMALVDERLSTEGTGLPFGL
        MAAVTSAA A VRTSLVQNR L +AS AP LLGLP+L KK GVRC+MEGK NGEVENKSSN GMGASLIAAACA TMSSPAMALVDERLSTEGTGLPFGL
Subjt:  MAAVTSAAVAAVRTSLVQNRPLTAASSAPILLGLPSLRKK-GVRCTMEGKANGEVENKSSNSGMGASLIAAACAVTMSSPAMALVDERLSTEGTGLPFGL

Query:  SNNLLGWILLGGFGLIWSFYIVYTSTLEEDEESGLSL
        SNNLLGWILLG F LIW+FYIVYTSTLEEDEESGLSL
Subjt:  SNNLLGWILLGGFGLIWSFYIVYTSTLEEDEESGLSL

XP_008451280.1 PREDICTED: photosystem II reaction center W protein, chloroplastic-like [Cucumis melo]1.7e-5389.13Show/hide
Query:  MAAVTSAAVAAVRTSLVQNRP-LTAASSAPILLGLPSLRKK-GVRCTMEGKANGEVENKSSNSGMGASLIAAACAVTMSSPAMALVDERLSTEGTGLPFG
        MAAVTSAA AAVRTSLVQNRP L +AS AP LLGLP+L KK GVRC+MEGK NGEVENKSSN GMGASLIAAACA TMSSPAMALVDERLSTEGTGLPFG
Subjt:  MAAVTSAAVAAVRTSLVQNRP-LTAASSAPILLGLPSLRKK-GVRCTMEGKANGEVENKSSNSGMGASLIAAACAVTMSSPAMALVDERLSTEGTGLPFG

Query:  LSNNLLGWILLGGFGLIWSFYIVYTSTLEEDEESGLSL
        LSNNLLGWILLG FGLIW+FYIVYTSTLEEDEESGLSL
Subjt:  LSNNLLGWILLGGFGLIWSFYIVYTSTLEEDEESGLSL

XP_022991740.1 photosystem II reaction center W protein, chloroplastic-like [Cucurbita maxima]9.4e-5285.4Show/hide
Query:  MAAVTSAAVAAVRTSLVQNRPLTAASSAPILLGLPSLRKKG-VRCTMEGKANGEVENKSSNSGMGASLIAAACAVTMSSPAMALVDERLSTEGTGLPFGL
        MAAVTSAA A VR+SLVQNRP  AAS AP LLGLP+LRKKG VRC+MEGKANGEVENKSS  GMGASL+AAA A +MSSPAMALVDERLSTEGTGLPFGL
Subjt:  MAAVTSAAVAAVRTSLVQNRPLTAASSAPILLGLPSLRKKG-VRCTMEGKANGEVENKSSNSGMGASLIAAACAVTMSSPAMALVDERLSTEGTGLPFGL

Query:  SNNLLGWILLGGFGLIWSFYIVYTSTLEEDEESGLSL
        SNNLLGWILLG FG IW+FYI+YTSTLEEDEESGLSL
Subjt:  SNNLLGWILLGGFGLIWSFYIVYTSTLEEDEESGLSL

XP_038900227.1 photosystem II reaction center W protein, chloroplastic-like [Benincasa hispida]2.6e-5489.05Show/hide
Query:  MAAVTSAAVAAVRTSLVQNRPLTAASSAPILLGLPSLRKK-GVRCTMEGKANGEVENKSSNSGMGASLIAAACAVTMSSPAMALVDERLSTEGTGLPFGL
        MAAVTSAAVA  RTSLVQNRPL AAS AP LLGLP+L KK GVRC+MEGK NGEVENKSSN GMGASLIAAACA TMSSPAMALVDERLSTEGTGLPFGL
Subjt:  MAAVTSAAVAAVRTSLVQNRPLTAASSAPILLGLPSLRKK-GVRCTMEGKANGEVENKSSNSGMGASLIAAACAVTMSSPAMALVDERLSTEGTGLPFGL

Query:  SNNLLGWILLGGFGLIWSFYIVYTSTLEEDEESGLSL
        SNNLLGWIL G FGLIW+FYIVYTSTLEEDEESGLSL
Subjt:  SNNLLGWILLGGFGLIWSFYIVYTSTLEEDEESGLSL

TrEMBL top hitse value%identityAlignment
A0A0A0K4V6 PSII 6.1 kDa protein7.0e-5387.59Show/hide
Query:  MAAVTSAAVAAVRTSLVQNRPLTAASSAPILLGLPSLRKK-GVRCTMEGKANGEVENKSSNSGMGASLIAAACAVTMSSPAMALVDERLSTEGTGLPFGL
        MAAVTSAA A VRTSLVQNR L +AS AP LLGLP+L KK GVRC+MEGK NGEVENKSSN GMGASLIAAACA TMSSPAMALVDERLSTEGTGLPFGL
Subjt:  MAAVTSAAVAAVRTSLVQNRPLTAASSAPILLGLPSLRKK-GVRCTMEGKANGEVENKSSNSGMGASLIAAACAVTMSSPAMALVDERLSTEGTGLPFGL

Query:  SNNLLGWILLGGFGLIWSFYIVYTSTLEEDEESGLSL
        SNNLLGWILLG F LIW+FYIVYTSTLEEDEESGLSL
Subjt:  SNNLLGWILLGGFGLIWSFYIVYTSTLEEDEESGLSL

A0A1S3BQI5 PSII 6.1 kDa protein8.3e-5489.13Show/hide
Query:  MAAVTSAAVAAVRTSLVQNRP-LTAASSAPILLGLPSLRKK-GVRCTMEGKANGEVENKSSNSGMGASLIAAACAVTMSSPAMALVDERLSTEGTGLPFG
        MAAVTSAA AAVRTSLVQNRP L +AS AP LLGLP+L KK GVRC+MEGK NGEVENKSSN GMGASLIAAACA TMSSPAMALVDERLSTEGTGLPFG
Subjt:  MAAVTSAAVAAVRTSLVQNRP-LTAASSAPILLGLPSLRKK-GVRCTMEGKANGEVENKSSNSGMGASLIAAACAVTMSSPAMALVDERLSTEGTGLPFG

Query:  LSNNLLGWILLGGFGLIWSFYIVYTSTLEEDEESGLSL
        LSNNLLGWILLG FGLIW+FYIVYTSTLEEDEESGLSL
Subjt:  LSNNLLGWILLGGFGLIWSFYIVYTSTLEEDEESGLSL

A0A5D3DRC0 PSII 6.1 kDa protein7.0e-5388.41Show/hide
Query:  MAAVTSAAVAAVRTSLVQNRP-LTAASSAPILLGLPSLRKK-GVRCTMEGKANGEVENKSSNSGMGASLIAAACAVTMSSPAMALVDERLSTEGTGLPFG
        MAAVTSAA AAVRTSLVQNRP L +AS AP LLGLP+L KK GVRC+MEGK NGEVENKSSN  MGASLIAAACA TMSSPAMALVDERLSTEGTGLPFG
Subjt:  MAAVTSAAVAAVRTSLVQNRP-LTAASSAPILLGLPSLRKK-GVRCTMEGKANGEVENKSSNSGMGASLIAAACAVTMSSPAMALVDERLSTEGTGLPFG

Query:  LSNNLLGWILLGGFGLIWSFYIVYTSTLEEDEESGLSL
        LSNNLLGWILLG FGLIW+FYIVYTSTLEEDEESGLSL
Subjt:  LSNNLLGWILLGGFGLIWSFYIVYTSTLEEDEESGLSL

A0A6J1GQI7 PSII 6.1 kDa protein3.0e-5183.94Show/hide
Query:  MAAVTSAAVAAVRTSLVQNRPLTAASSAPILLGLPSLRKK-GVRCTMEGKANGEVENKSSNSGMGASLIAAACAVTMSSPAMALVDERLSTEGTGLPFGL
        MAAVTSAA A VR+SLVQNRPL AAS +P LLGLP+L KK GVRC+MEGKANG+VENKSS  GMGASL+AAA A +MSSPAMALVDERLSTEGTGLPFGL
Subjt:  MAAVTSAAVAAVRTSLVQNRPLTAASSAPILLGLPSLRKK-GVRCTMEGKANGEVENKSSNSGMGASLIAAACAVTMSSPAMALVDERLSTEGTGLPFGL

Query:  SNNLLGWILLGGFGLIWSFYIVYTSTLEEDEESGLSL
        SNNLLGWILLG FG IW+FYI+YTSTLEEDEESGLSL
Subjt:  SNNLLGWILLGGFGLIWSFYIVYTSTLEEDEESGLSL

A0A6J1JTT6 PSII 6.1 kDa protein4.6e-5285.4Show/hide
Query:  MAAVTSAAVAAVRTSLVQNRPLTAASSAPILLGLPSLRKKG-VRCTMEGKANGEVENKSSNSGMGASLIAAACAVTMSSPAMALVDERLSTEGTGLPFGL
        MAAVTSAA A VR+SLVQNRP  AAS AP LLGLP+LRKKG VRC+MEGKANGEVENKSS  GMGASL+AAA A +MSSPAMALVDERLSTEGTGLPFGL
Subjt:  MAAVTSAAVAAVRTSLVQNRPLTAASSAPILLGLPSLRKKG-VRCTMEGKANGEVENKSSNSGMGASLIAAACAVTMSSPAMALVDERLSTEGTGLPFGL

Query:  SNNLLGWILLGGFGLIWSFYIVYTSTLEEDEESGLSL
        SNNLLGWILLG FG IW+FYI+YTSTLEEDEESGLSL
Subjt:  SNNLLGWILLGGFGLIWSFYIVYTSTLEEDEESGLSL

SwissProt top hitse value%identityAlignment
Q39194 Photosystem II reaction center W protein, chloroplastic1.4e-2961.54Show/hide
Query:  MAAVTSAA--VAAVRTSLVQNRPLTAASSAPILLGLPSLRKK--GVRCTMEGKANGEVENKSSNSGMGASLIAAACA---VTMSSPAMALVDERLSTEGT
        MA+ T++A  V+A R +L+  +P T A SAP+ LGLP + KK  GVRC+ME K       + + S MGA + AAA A     MS+PAMALVDER+STEGT
Subjt:  MAAVTSAA--VAAVRTSLVQNRPLTAASSAPILLGLPSLRKK--GVRCTMEGKANGEVENKSSNSGMGASLIAAACA---VTMSSPAMALVDERLSTEGT

Query:  GLPFGLSNNLLGWILLGGFGLIWSFYIVYTSTLEEDEESGLSL
        GLPFGLSNNLLGWIL G FGLIW+F+ VYTS+LEEDEESGLSL
Subjt:  GLPFGLSNNLLGWILLGGFGLIWSFYIVYTSTLEEDEESGLSL

Q41387 Photosystem II reaction center W protein, chloroplastic2.7e-3361.15Show/hide
Query:  MAAVTSAAVAAV--RTSLVQNRPLTAASSAPILLGLPSLRKKG-VRCTMEGKANGEVENKSSNSGMGASLIAAACAVTMSSPAMALVDERLSTEGTGLPF
        MA +T+++ A++  R SLV N  +   SS+PI LGLPS+ K+  V C++E K +      ++N  MGASL+AAA A T+S+PAMALVDER+STEGTGLPF
Subjt:  MAAVTSAAVAAV--RTSLVQNRPLTAASSAPILLGLPSLRKKG-VRCTMEGKANGEVENKSSNSGMGASLIAAACAVTMSSPAMALVDERLSTEGTGLPF

Query:  GLSNNLLGWILLGGFGLIWSFYIVYTSTLEEDEESGLSL
        GLSNNLLGWIL G FGLIW+ Y VY S LEEDEESGLSL
Subjt:  GLSNNLLGWILLGGFGLIWSFYIVYTSTLEEDEESGLSL

Q5ZBY9 Photosystem II reaction center W protein, chloroplastic3.6e-2252.21Show/hide
Query:  MAAVTSAAVAAVRTSLVQNRPLTAASSAPILLGLPSL---RKKGVRCTMEGKANGEVENKSSNSGMGASLIAAACAVTMSSPAMALVDERLSTEGTGLPF
        MA V++AA  +V    V   P          LGLP +   R + VRC    +A       ++  G GASL+A A     ++PAMALVDER+STEGTGL  
Subjt:  MAAVTSAAVAAVRTSLVQNRPLTAASSAPILLGLPSL---RKKGVRCTMEGKANGEVENKSSNSGMGASLIAAACAVTMSSPAMALVDERLSTEGTGLPF

Query:  GLSNNLLGWILLGGFGLIWSFYIVYTSTLEEDEESG
        GLSNNLLGWILLG FGLIWS Y +YTS LEEDEESG
Subjt:  GLSNNLLGWILLGGFGLIWSFYIVYTSTLEEDEESG

Q9SPI9 Photosystem II reaction center W protein, chloroplastic4.6e-0941.1Show/hide
Query:  SLIAAACAVTMSSPAMALVDERLSTEGTGLPFGLSNNLLGWILLGGFGLIWSFYIVYTSTLE--EDEESGLSL
        ++++   A   + PA ALVDER++ +GTG PFG+++ +LGW+LLG FG +W+ + +    L   ED + GL L
Subjt:  SLIAAACAVTMSSPAMALVDERLSTEGTGLPFGLSNNLLGWILLGGFGLIWSFYIVYTSTLE--EDEESGLSL

Arabidopsis top hitse value%identityAlignment
AT2G30570.1 photosystem II reaction center W9.8e-3161.54Show/hide
Query:  MAAVTSAA--VAAVRTSLVQNRPLTAASSAPILLGLPSLRKK--GVRCTMEGKANGEVENKSSNSGMGASLIAAACA---VTMSSPAMALVDERLSTEGT
        MA+ T++A  V+A R +L+  +P T A SAP+ LGLP + KK  GVRC+ME K       + + S MGA + AAA A     MS+PAMALVDER+STEGT
Subjt:  MAAVTSAA--VAAVRTSLVQNRPLTAASSAPILLGLPSLRKK--GVRCTMEGKANGEVENKSSNSGMGASLIAAACA---VTMSSPAMALVDERLSTEGT

Query:  GLPFGLSNNLLGWILLGGFGLIWSFYIVYTSTLEEDEESGLSL
        GLPFGLSNNLLGWIL G FGLIW+F+ VYTS+LEEDEESGLSL
Subjt:  GLPFGLSNNLLGWILLGGFGLIWSFYIVYTSTLEEDEESGLSL


Sequences Show/hide sequences
CDS sequenceShow/hide CDS sequence
ATGGCCGCCGTGACCTCCGCCGCCGTCGCCGCCGTCCGCACTTCTCTCGTTCAGAACCGCCCTCTCACGGCGGCTTCATCCGCCCCAATCCTTCTTGGGTTGCCTTCCTT
GAGAAAGAAAGGAGTGAGGTGTACTATGGAAGGTAAGGCAAATGGAGAAGTAGAAAACAAGTCGAGCAACTCGGGGATGGGCGCATCGTTGATAGCTGCGGCATGTGCGG
TGACAATGTCGAGCCCAGCCATGGCTTTGGTGGATGAGAGATTGAGCACTGAAGGAACTGGCCTTCCATTTGGTTTGAGCAACAATCTTCTTGGTTGGATTCTCTTGGGG
GGTTTTGGTCTCATATGGTCATTCTATATTGTTTACACTTCTACCCTTGAAGAGGATGAGGAATCAGGCTTATCTCTTTAA
mRNA sequenceShow/hide mRNA sequence
AAATAATATTAATCTTTACAAACCCTTTGTTCTTCACTCTCCAAAATTCAATTATTTTTCATTTTTCTTCCTAACTTCAAATGGCCGCCGTGACCTCCGCCGCCGTCGCC
GCCGTCCGCACTTCTCTCGTTCAGAACCGCCCTCTCACGGCGGCTTCATCCGCCCCAATCCTTCTTGGGTTGCCTTCCTTGAGAAAGAAAGGAGTGAGGTGTACTATGGA
AGGTAAGGCAAATGGAGAAGTAGAAAACAAGTCGAGCAACTCGGGGATGGGCGCATCGTTGATAGCTGCGGCATGTGCGGTGACAATGTCGAGCCCAGCCATGGCTTTGG
TGGATGAGAGATTGAGCACTGAAGGAACTGGCCTTCCATTTGGTTTGAGCAACAATCTTCTTGGTTGGATTCTCTTGGGGGGTTTTGGTCTCATATGGTCATTCTATATT
GTTTACACTTCTACCCTTGAAGAGGATGAGGAATCAGGCTTATCTCTTTAAGCCAAAACTTGTCATCTTATAATTATTGTTGTTTGTGGATATTTGCCTTTGGCTTGAAT
CTTAAAAGCTTTTGAATTCCTATCATCAAAGCTTTTTGTTGGAATATCAATGTAGAAAGAAGTAAAAGTGGCTAAAAACTACTTTGTTTTGTTGTTC
Protein sequenceShow/hide protein sequence
MAAVTSAAVAAVRTSLVQNRPLTAASSAPILLGLPSLRKKGVRCTMEGKANGEVENKSSNSGMGASLIAAACAVTMSSPAMALVDERLSTEGTGLPFGLSNNLLGWILLG
GFGLIWSFYIVYTSTLEEDEESGLSL