; ; ; ; ; ; ; ; ; ; ; ; ; ; ; ; ; ; ; CuGenDBv2

Sed0028138 (gene) of Chayote v1 genome

Gene IDSed0028138
OrganismSechium edule (Chayote v1)
DescriptionVQ motif-containing protein
Genome locationLG07:36453065..36453651
RNA-Seq ExpressionSed0028138
SyntenySed0028138
Gene Ontology termsGO:0006364 - rRNA processing (biological process)
GO:0042273 - ribosomal large subunit biogenesis (biological process)
GO:0005730 - nucleolus (cellular component)
GO:0030684 - preribosome (cellular component)
InterPro domainsIPR008889 - VQ
IPR039607 - VQ motif-containing protein 8/17/18/20/21/25
IPR039833 - VQ motif-containing protein 8, chloroplastic


Homology Show/hide homology
GenBank top hitse value%identityAlignment
KAG7013019.1 VQ motif-containing protein 8, chloroplastic, partial [Cucurbita argyrosperma subsp. argyrosperma]1.3e-3058.67Show/hide
Query:  MSPSKSCNLNGHRPSPLLIHKDSRTIRKPSQPPPQLRQPVIIYAHSPKIIHTQPKDFMALVQRLTGRVTVNDNLVSEKNVNENDCSSVLTEDYDQNNNSS
        MSP K  +++G RP PLL+HK SRTIRKPS PPPQLR+PVIIY HSPKIIHTQPKDFMALVQRLTG    N +     N   ND SSV+TE+        
Subjt:  MSPSKSCNLNGHRPSPLLIHKDSRTIRKPSQPPPQLRQPVIIYAHSPKIIHTQPKDFMALVQRLTGRVTVNDNLVSEKNVNENDCSSVLTEDYDQNNNSS

Query:  SFLSADVPLFTPRSSLLRYNSSERSPFSSPALVNSLSPSFMEFLKGLPEF
            ++ PLFTPRS                 LVNSLSPSFMEFLKGLPEF
Subjt:  SFLSADVPLFTPRSSLLRYNSSERSPFSSPALVNSLSPSFMEFLKGLPEF

XP_008466850.1 PREDICTED: VQ motif-containing protein 8, chloroplastic-like [Cucumis melo]2.3e-3056Show/hide
Query:  MSPSKSCNLNGHRPSPLLIHKDSRTIRKPSQPPPQLRQPVIIYAHSPKIIHTQPKDFMALVQRLTGRVTVNDNLVSEKNVNENDCSSVLTEDYDQNNNSS
        MSP KS  +NG RPSPLLIH DSR +RK     PQLRQP+IIY HSPKIIHT PKDFMALVQRLTG          E+N N+ND +S +T + D N   S
Subjt:  MSPSKSCNLNGHRPSPLLIHKDSRTIRKPSQPPPQLRQPVIIYAHSPKIIHTQPKDFMALVQRLTGRVTVNDNLVSEKNVNENDCSSVLTEDYDQNNNSS

Query:  SFLSADVPLFTPRSSLLRYNSSERSPFSSPALVNSLSPSFMEFLKGLPEF
        +             S+L+Y+S   +PFSSPA ++SLSPSFM+FLK LPEF
Subjt:  SFLSADVPLFTPRSSLLRYNSSERSPFSSPALVNSLSPSFMEFLKGLPEF

XP_010099240.1 VQ motif-containing protein 8, chloroplastic [Morus notabilis]7.9e-2342.78Show/hide
Query:  MSPSKSCNLNGHRPSPLLIHKDSRTIRKPS----QPPPQLRQPVIIYAHSPKIIHTQPKDFMALVQRLTGRVTVNDN-----------------------
        MSP K   +NG RPSPL I+K+S TI KPS      PPQ  QPVIIY HSP+IIHT+P++FMA+VQ LTG    NDN                       
Subjt:  MSPSKSCNLNGHRPSPLLIHKDSRTIRKPS----QPPPQLRQPVIIYAHSPKIIHTQPKDFMALVQRLTGRVTVNDN-----------------------

Query:  -----LVSEKNVNENDCSSVLTEDYDQNNNSSSFLS----ADVPLFTPRSSLLRYNSSERSPF------SSPALVNS--LSPSFMEFLKGLPEF
               SE   + N+ SSVLT++ +  ++ +  LS    AD+PLFTP      +  S R+ F      SSP L +S  +SPSF+EF+KGLPE+
Subjt:  -----LVSEKNVNENDCSSVLTEDYDQNNNSSSFLS----ADVPLFTPRSSLLRYNSSERSPF------SSPALVNS--LSPSFMEFLKGLPEF

XP_022150646.1 VQ motif-containing protein 8, chloroplastic [Momordica charantia]6.2e-3659.76Show/hide
Query:  MSPSKSCNLNGHRPSPLLIHKDSRTIRKPSQPPPQLRQPVIIYAHSPKIIHTQPKDFMALVQRLTGRVTV----NDNLVSEKNVN-ENDCSSVLTEDYD-
        MSP+KSC++NG RPSPLLIHK SR IRK   PPPQLRQP+IIY HSPKIIHTQPKDFMALVQRLTG         D+     NVN +ND SSVLTE+ + 
Subjt:  MSPSKSCNLNGHRPSPLLIHKDSRTIRKPSQPPPQLRQPVIIYAHSPKIIHTQPKDFMALVQRLTGRVTV----NDNLVSEKNVN-ENDCSSVLTEDYD-

Query:  -------------QNNNSSSFLSADVPLFTPRSSLLRYNSSERSPFSSPALVNSLSPSFMEFLKGLPEF
                     Q+ + S    ADVPLFTP    LRY + + + F+SP L NSLSPSFMEFLKGLPEF
Subjt:  -------------QNNNSSSFLSADVPLFTPRSSLLRYNSSERSPFSSPALVNSLSPSFMEFLKGLPEF

XP_038893302.1 VQ motif-containing protein 8, chloroplastic [Benincasa hispida]8.1e-3660.87Show/hide
Query:  MSPSKSCNLNGHRPSPLLIHKDSRTIRKPSQPPPQLRQPVIIYAHSPKIIHTQPKDFMALVQRLTG--------RVTVNDNLVSEKNVNENDCSSVLTED
        MSP KSC +NG RPSPLLIHKDSR IRK     PQLRQPVIIY HSPKIIHTQPKDFMALVQRLTG                 SE+N N+ND SS LT +
Subjt:  MSPSKSCNLNGHRPSPLLIHKDSRTIRKPSQPPPQLRQPVIIYAHSPKIIHTQPKDFMALVQRLTG--------RVTVNDNLVSEKNVNENDCSSVLTED

Query:  YDQNNNSSSFLSADVPLFTPR---SSLLRYNSSERSPFSSPALVNSLSPSFMEFLKGLPEF
         + N       S  +     R   SSLLRY+S   +PFSSPAL+NSLSPSFMEFLK LPEF
Subjt:  YDQNNNSSSFLSADVPLFTPR---SSLLRYNSSERSPFSSPALVNSLSPSFMEFLKGLPEF

TrEMBL top hitse value%identityAlignment
A0A0A0KT78 VQ domain-containing protein3.0e-2854.72Show/hide
Query:  MSPSKSCNLNGHRPSPLLIHKDSRTIRKPSQPPPQLRQPVIIYAHSPKIIHTQPKDFMALVQRLTG-------RVTVNDNLVSEKNVNENDCSSVLTEDY
        MSP KS  +NG RPSPLLIH  SR IRK    P QLRQP+IIY HSPKIIHT PKDFMALVQRLTG        +      +SE+N+N+ND SS +T + 
Subjt:  MSPSKSCNLNGHRPSPLLIHKDSRTIRKPSQPPPQLRQPVIIYAHSPKIIHTQPKDFMALVQRLTG-------RVTVNDNLVSEKNVNENDCSSVLTEDY

Query:  DQNNNSSSFLSADVPLFTPRSSLLRYNSSE-RSPFSSPA-LVNSLSPSFMEFLKGLPEF
        D N   S+             S+L+Y+S +  +PFSSPA L +SLSPSFM+FLK LPEF
Subjt:  DQNNNSSSFLSADVPLFTPRSSLLRYNSSE-RSPFSSPA-LVNSLSPSFMEFLKGLPEF

A0A1S3CS67 VQ motif-containing protein 8, chloroplastic-like1.1e-3056Show/hide
Query:  MSPSKSCNLNGHRPSPLLIHKDSRTIRKPSQPPPQLRQPVIIYAHSPKIIHTQPKDFMALVQRLTGRVTVNDNLVSEKNVNENDCSSVLTEDYDQNNNSS
        MSP KS  +NG RPSPLLIH DSR +RK     PQLRQP+IIY HSPKIIHT PKDFMALVQRLTG          E+N N+ND +S +T + D N   S
Subjt:  MSPSKSCNLNGHRPSPLLIHKDSRTIRKPSQPPPQLRQPVIIYAHSPKIIHTQPKDFMALVQRLTGRVTVNDNLVSEKNVNENDCSSVLTEDYDQNNNSS

Query:  SFLSADVPLFTPRSSLLRYNSSERSPFSSPALVNSLSPSFMEFLKGLPEF
        +             S+L+Y+S   +PFSSPA ++SLSPSFM+FLK LPEF
Subjt:  SFLSADVPLFTPRSSLLRYNSSERSPFSSPALVNSLSPSFMEFLKGLPEF

A0A5D3CFH5 VQ motif-containing protein 81.1e-3056Show/hide
Query:  MSPSKSCNLNGHRPSPLLIHKDSRTIRKPSQPPPQLRQPVIIYAHSPKIIHTQPKDFMALVQRLTGRVTVNDNLVSEKNVNENDCSSVLTEDYDQNNNSS
        MSP KS  +NG RPSPLLIH DSR +RK     PQLRQP+IIY HSPKIIHT PKDFMALVQRLTG          E+N N+ND +S +T + D N   S
Subjt:  MSPSKSCNLNGHRPSPLLIHKDSRTIRKPSQPPPQLRQPVIIYAHSPKIIHTQPKDFMALVQRLTGRVTVNDNLVSEKNVNENDCSSVLTEDYDQNNNSS

Query:  SFLSADVPLFTPRSSLLRYNSSERSPFSSPALVNSLSPSFMEFLKGLPEF
        +             S+L+Y+S   +PFSSPA ++SLSPSFM+FLK LPEF
Subjt:  SFLSADVPLFTPRSSLLRYNSSERSPFSSPALVNSLSPSFMEFLKGLPEF

A0A6J1DC48 VQ motif-containing protein 8, chloroplastic3.0e-3659.76Show/hide
Query:  MSPSKSCNLNGHRPSPLLIHKDSRTIRKPSQPPPQLRQPVIIYAHSPKIIHTQPKDFMALVQRLTGRVTV----NDNLVSEKNVN-ENDCSSVLTEDYD-
        MSP+KSC++NG RPSPLLIHK SR IRK   PPPQLRQP+IIY HSPKIIHTQPKDFMALVQRLTG         D+     NVN +ND SSVLTE+ + 
Subjt:  MSPSKSCNLNGHRPSPLLIHKDSRTIRKPSQPPPQLRQPVIIYAHSPKIIHTQPKDFMALVQRLTGRVTV----NDNLVSEKNVN-ENDCSSVLTEDYD-

Query:  -------------QNNNSSSFLSADVPLFTPRSSLLRYNSSERSPFSSPALVNSLSPSFMEFLKGLPEF
                     Q+ + S    ADVPLFTP    LRY + + + F+SP L NSLSPSFMEFLKGLPEF
Subjt:  -------------QNNNSSSFLSADVPLFTPRSSLLRYNSSERSPFSSPALVNSLSPSFMEFLKGLPEF

W9RYA3 VQ domain-containing protein3.8e-2342.78Show/hide
Query:  MSPSKSCNLNGHRPSPLLIHKDSRTIRKPS----QPPPQLRQPVIIYAHSPKIIHTQPKDFMALVQRLTGRVTVNDN-----------------------
        MSP K   +NG RPSPL I+K+S TI KPS      PPQ  QPVIIY HSP+IIHT+P++FMA+VQ LTG    NDN                       
Subjt:  MSPSKSCNLNGHRPSPLLIHKDSRTIRKPS----QPPPQLRQPVIIYAHSPKIIHTQPKDFMALVQRLTGRVTVNDN-----------------------

Query:  -----LVSEKNVNENDCSSVLTEDYDQNNNSSSFLS----ADVPLFTPRSSLLRYNSSERSPF------SSPALVNS--LSPSFMEFLKGLPEF
               SE   + N+ SSVLT++ +  ++ +  LS    AD+PLFTP      +  S R+ F      SSP L +S  +SPSF+EF+KGLPE+
Subjt:  -----LVSEKNVNENDCSSVLTEDYDQNNNSSSFLS----ADVPLFTPRSSLLRYNSSERSPF------SSPALVNS--LSPSFMEFLKGLPEF

SwissProt top hitse value%identityAlignment
F4HWF9 Nuclear speckle RNA-binding protein B5.3e-0639.33Show/hide
Query:  SPSKSCNLNGHRPSPLLIHKDSRTIRK--------PSQPPPQLRQ-----------PVIIYAHSPKIIHTQPKDFMALVQRLTGRVTVN
        SP    N+ G +P+PL +  DS  I K        P   PPQ  Q           PV IY  +P+IIHT P +FM LVQRLTG+ + +
Subjt:  SPSKSCNLNGHRPSPLLIHKDSRTIRK--------PSQPPPQLRQ-----------PVIIYAHSPKIIHTQPKDFMALVQRLTGRVTVN

Q8LGD5 Protein MKS11.2e-1052.24Show/hide
Query:  GHRPSPLLIHKDSRTIRKP----------SQPPPQL-RQPVIIYAHSPKIIHTQPKDFMALVQRLTG
        G RPSPL +HKDS  I+KP           QPPP + R+PV+IYA SPK++H    +FM +VQRLTG
Subjt:  GHRPSPLLIHKDSRTIRKP----------SQPPPQL-RQPVIIYAHSPKIIHTQPKDFMALVQRLTG

Q9CA36 VQ motif-containing protein 8, chloroplastic1.1e-1441.18Show/hide
Query:  MSPSKSCNLNGHRPSPLLIHKDSRTIRK----PSQPPPQLR-QPVIIYAHSPKIIHTQPKDFMALVQRLTGRVTVNDNLVSEKNVNENDCSSVLTEDYD-
        M P++   +NG RPS L +  +S TI+K     S+P P  R  PVIIYAHSPK+IHT+ +DFMALVQRLTG     D ++  +N +E+  SSV+TE+ + 
Subjt:  MSPSKSCNLNGHRPSPLLIHKDSRTIRK----PSQPPPQLR-QPVIIYAHSPKIIHTQPKDFMALVQRLTGRVTVNDNLVSEKNVNENDCSSVLTEDYD-

Query:  -QNNNSSSFLS--------ADVPLFTPRSSLLRYNSSERSPFSSPALVNSLSP
          +N ++ F           D+PLFTP SS+  + S  +  + SP   +S  P
Subjt:  -QNNNSSSFLS--------ADVPLFTPRSSLLRYNSSERSPFSSPALVNSLSP

Q9LS54 VQ motif-containing protein 203.0e-0941.05Show/hide
Query:  PSPLLIHKDSRTIRKPSQP-----PPQLRQPVIIYAHSPKIIHTQPKDFMALVQRLTGRVTVND-----NLVSEKNVNENDCSSVLTEDYDQNNN
        P  L ++KDS  I+KP  P       + R PVIIY H+P+IIHT PKDFMALVQ+LTG    ++     N +++  V ++   +V     D+ NN
Subjt:  PSPLLIHKDSRTIRKPSQP-----PPQLRQPVIIYAHSPKIIHTQPKDFMALVQRLTGRVTVND-----NLVSEKNVNENDCSSVLTEDYDQNNN

Arabidopsis top hitse value%identityAlignment
AT1G21320.1 nucleotide binding;nucleic acid binding3.8e-0739.33Show/hide
Query:  SPSKSCNLNGHRPSPLLIHKDSRTIRK--------PSQPPPQLRQ-----------PVIIYAHSPKIIHTQPKDFMALVQRLTGRVTVN
        SP    N+ G +P+PL +  DS  I K        P   PPQ  Q           PV IY  +P+IIHT P +FM LVQRLTG+ + +
Subjt:  SPSKSCNLNGHRPSPLLIHKDSRTIRK--------PSQPPPQLRQ-----------PVIIYAHSPKIIHTQPKDFMALVQRLTGRVTVN

AT1G21326.1 VQ motif-containing protein2.0e-0841.86Show/hide
Query:  KSCNLNGHRPSPLLIHKDSRTIRK--------PSQPPPQLRQ-----------PVIIYAHSPKIIHTQPKDFMALVQRLTGRVTVN
        +S  + G RP PL +  DS  I K        P   PPQ  Q           PVIIY  SP+IIHT P +FM LVQRLTG+ + +
Subjt:  KSCNLNGHRPSPLLIHKDSRTIRK--------PSQPPPQLRQ-----------PVIIYAHSPKIIHTQPKDFMALVQRLTGRVTVN

AT1G68450.1 VQ motif-containing protein7.6e-1641.18Show/hide
Query:  MSPSKSCNLNGHRPSPLLIHKDSRTIRK----PSQPPPQLR-QPVIIYAHSPKIIHTQPKDFMALVQRLTGRVTVNDNLVSEKNVNENDCSSVLTEDYD-
        M P++   +NG RPS L +  +S TI+K     S+P P  R  PVIIYAHSPK+IHT+ +DFMALVQRLTG     D ++  +N +E+  SSV+TE+ + 
Subjt:  MSPSKSCNLNGHRPSPLLIHKDSRTIRK----PSQPPPQLR-QPVIIYAHSPKIIHTQPKDFMALVQRLTGRVTVNDNLVSEKNVNENDCSSVLTEDYD-

Query:  -QNNNSSSFLS--------ADVPLFTPRSSLLRYNSSERSPFSSPALVNSLSP
          +N ++ F           D+PLFTP SS+  + S  +  + SP   +S  P
Subjt:  -QNNNSSSFLS--------ADVPLFTPRSSLLRYNSSERSPFSSPALVNSLSP

AT3G18360.1 VQ motif-containing protein2.2e-1041.05Show/hide
Query:  PSPLLIHKDSRTIRKPSQP-----PPQLRQPVIIYAHSPKIIHTQPKDFMALVQRLTGRVTVND-----NLVSEKNVNENDCSSVLTEDYDQNNN
        P  L ++KDS  I+KP  P       + R PVIIY H+P+IIHT PKDFMALVQ+LTG    ++     N +++  V ++   +V     D+ NN
Subjt:  PSPLLIHKDSRTIRKPSQP-----PPQLRQPVIIYAHSPKIIHTQPKDFMALVQRLTGRVTVND-----NLVSEKNVNENDCSSVLTEDYDQNNN

AT3G18690.1 MAP kinase substrate 18.7e-1252.24Show/hide
Query:  GHRPSPLLIHKDSRTIRKP----------SQPPPQL-RQPVIIYAHSPKIIHTQPKDFMALVQRLTG
        G RPSPL +HKDS  I+KP           QPPP + R+PV+IYA SPK++H    +FM +VQRLTG
Subjt:  GHRPSPLLIHKDSRTIRKP----------SQPPPQL-RQPVIIYAHSPKIIHTQPKDFMALVQRLTG


Sequences Show/hide sequences
CDS sequenceShow/hide CDS sequence
ATGAGCCCATCTAAATCCTGCAATCTCAATGGCCATCGTCCATCTCCTCTCCTTATCCACAAAGATTCTCGTACGATCCGAAAGCCCTCTCAGCCGCCACCGCAGCTCCG
GCAACCGGTCATAATCTACGCCCATTCCCCCAAAATCATCCACACGCAGCCTAAAGATTTTATGGCCCTTGTCCAACGCCTCACCGGACGAGTGACGGTTAACGATAATT
TGGTTTCAGAGAAGAATGTGAACGAGAATGATTGTTCGTCGGTTCTCACGGAGGACTATGATCAGAATAACAATTCTTCATCGTTTTTGTCAGCGGATGTTCCTTTGTTC
ACTCCTCGTTCTTCTCTTCTTAGGTATAATTCCTCCGAGAGGTCGCCGTTTTCGTCTCCGGCTTTGGTTAACTCTTTGTCTCCTTCTTTCATGGAGTTTCTCAAAGGACT
GCCTGAATTTGAATCTTCTTAA
mRNA sequenceShow/hide mRNA sequence
CTCTTTAATTATTTCACTTCCAAATCAGAAAAAAAAACAACAAAATTCAAATCTTTCTCGATTATGAGCCCATCTAAATCCTGCAATCTCAATGGCCATCGTCCATCTCC
TCTCCTTATCCACAAAGATTCTCGTACGATCCGAAAGCCCTCTCAGCCGCCACCGCAGCTCCGGCAACCGGTCATAATCTACGCCCATTCCCCCAAAATCATCCACACGC
AGCCTAAAGATTTTATGGCCCTTGTCCAACGCCTCACCGGACGAGTGACGGTTAACGATAATTTGGTTTCAGAGAAGAATGTGAACGAGAATGATTGTTCGTCGGTTCTC
ACGGAGGACTATGATCAGAATAACAATTCTTCATCGTTTTTGTCAGCGGATGTTCCTTTGTTCACTCCTCGTTCTTCTCTTCTTAGGTATAATTCCTCCGAGAGGTCGCC
GTTTTCGTCTCCGGCTTTGGTTAACTCTTTGTCTCCTTCTTTCATGGAGTTTCTCAAAGGACTGCCTGAATTTGAATCTTCTTAATTCCTCCACCTACGTGTGTTAATTT
GGTTTCTTTCTTCCGGGATTGTTTGTTTGATTTTTTT
Protein sequenceShow/hide protein sequence
MSPSKSCNLNGHRPSPLLIHKDSRTIRKPSQPPPQLRQPVIIYAHSPKIIHTQPKDFMALVQRLTGRVTVNDNLVSEKNVNENDCSSVLTEDYDQNNNSSSFLSADVPLF
TPRSSLLRYNSSERSPFSSPALVNSLSPSFMEFLKGLPEFESS