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Sed0028154 (gene) of Chayote v1 genome

Gene IDSed0028154
OrganismSechium edule (Chayote v1)
DescriptionRrna intron-encoded homing endonuclease
Genome locationLG09:19830667..19831452
RNA-Seq ExpressionSed0028154
SyntenySed0028154
Gene Ontology termsGO:0006259 - DNA metabolic process (biological process)
GO:0004518 - nuclease activity (molecular function)
GO:0016779 - nucleotidyltransferase activity (molecular function)
InterPro domainsNA


Homology Show/hide homology
GenBank top hitse value%identityAlignment
KAE8637441.1 hypothetical protein CSA_023571 [Cucumis sativus]4.5e-4870.12Show/hide
Query:  MGGGAWPFLVGGAICLVNSVNERDLSLLTSYAE------ESLRIPSKRESSARVDYVPALCTHRPSLLPIEWSGEVFGSRRRGRGRRSRNKVSVGEPAEG
        MGGGAWPFLVGGAICLVNSVNERDLSLLTSYAE          IPSKRESSARVDYVPALCTHRPSLLPIEWSGEVFGSRRRGRGRRSRNKVSVGEPAEG
Subjt:  MGGGAWPFLVGGAICLVNSVNERDLSLLTSYAE------ESLRIPSKRESSARVDYVPALCTHRPSLLPIEWSGEVFGSRRRGRGRRSRNKVSVGEPAEG

Query:  SLSMPKHQT-----------------TRGCSFFAYPLSVP---KQNPGTGRAKELKQIRSPPPR
        SLSMPK                     R  S  A+ L +P   KQN G GRAKEL ++ SP PR
Subjt:  SLSMPKHQT-----------------TRGCSFFAYPLSVP---KQNPGTGRAKELKQIRSPPPR

KAF1855634.1 hypothetical protein Lal_00048004 [Lupinus albus]4.1e-3354.02Show/hide
Query:  MGGGAWPFLVGGAICLVNSVNERDLSLLTSYAE------ESLRIPSKRESSARVDYVPALCTHRPSLLPIEWSGEVFGSRRRGR------GRRSRNKVSV
        MGGGAWPFLVGGAICLVNSVNERDLSLLTSY E          IPSKRESSARVDYVPALCTHRPSLLPIEWSGEVFG RRRGR       RR    V  
Subjt:  MGGGAWPFLVGGAICLVNSVNERDLSLLTSYAE------ESLRIPSKRESSARVDYVPALCTHRPSLLPIEWSGEVFGSRRRGR------GRRSRNKVSV

Query:  GEPAEGSLSMPKHQTTRGCSFFAYPLSVPKQNPGTGRAKELKQIRSPPPRPWCVGVEHSCRIIHNDSRQRISRL
          P     + P       C+  ++P +         + K   + R P       GV H+      DSRQRISRL
Subjt:  GEPAEGSLSMPKHQTTRGCSFFAYPLSVPKQNPGTGRAKELKQIRSPPPRPWCVGVEHSCRIIHNDSRQRISRL

KAG9444583.1 hypothetical protein H6P81_015923 [Aristolochia fimbriata]5.0e-3983.02Show/hide
Query:  MGGGAWPFLVGGAICLVNSVNERDLSLLTSYAE------ESLRIPSKRESSARVDYVPALCTHRPSLLPIEWSGEVFGSRRRGRGRRSRNKVSVGEPAEG
        MGGGAWPFLVGGAICLVNSVNERDL LLTSY E          IPSKR+SSARVDYVPALCTHRPS LPIEWSGEVFGSRRR RGRRS NKVSVGEPAEG
Subjt:  MGGGAWPFLVGGAICLVNSVNERDLSLLTSYAE------ESLRIPSKRESSARVDYVPALCTHRPSLLPIEWSGEVFGSRRRGRGRRSRNKVSVGEPAEG

Query:  SLSMPK
        SLS+P+
Subjt:  SLSMPK

TXG51768.1 hypothetical protein EZV62_024292 [Acer yangbiense]3.8e-3188.1Show/hide
Query:  MGGGAWPFLVGGAICLVNSVNERDLSLLTSYAE------ESLRIPSKRESSARVDYVPALCTHRPSLLPIEWSGEVFGSRRRGR
        MGGGAWPFLVGGAICLVNSVNERDLSLLTSYAE          IPSKRESSARVDYVPALCTHRPSLLPIEWSGEVFGSRRRGR
Subjt:  MGGGAWPFLVGGAICLVNSVNERDLSLLTSYAE------ESLRIPSKRESSARVDYVPALCTHRPSLLPIEWSGEVFGSRRRGR

XP_024924876.1 LOW QUALITY PROTEIN: uncharacterized protein LOC112489936 [Ziziphus jujuba]2.2e-3174.29Show/hide
Query:  MGGGAWPFLVGGAICLVNSVNERDLSLLTSYAEESLR-------------------IPSKRESSARVDYVPALCTHRPSLLPIEWSGEVFGSRRRGRGRR
        MGGGAWPFLVGGAICLVNSVNERDLSLLTSYAE +LR                   IPSKRESSARVDYVPALCTHRPSLLPIEWSGEVFGSRRRGR  R
Subjt:  MGGGAWPFLVGGAICLVNSVNERDLSLLTSYAEESLR-------------------IPSKRESSARVDYVPALCTHRPSLLPIEWSGEVFGSRRRGRGRR

Query:  SRNKV
          + V
Subjt:  SRNKV

TrEMBL top hitse value%identityAlignment
A0A0A0LPG1 Uncharacterized protein4.0e-5869.11Show/hide
Query:  MGGGAWPFLVGGAICLVNSVNERDLSLLTSYAE------ESLRIPSKRESSARVDYVPALCTHRPSLLPIEWSGEVFGSRRRGRGRRSRNKVSVGEPAEG
        MGGGAWPFLVGGAICLVNSVNERDLSLLTSYAE          IPSKRESSARVDYVPALCTHRPSLLPIEWSGEVFGSRRRGRGRRSRNKVSVGEPAEG
Subjt:  MGGGAWPFLVGGAICLVNSVNERDLSLLTSYAE------ESLRIPSKRESSARVDYVPALCTHRPSLLPIEWSGEVFGSRRRGRGRRSRNKVSVGEPAEG

Query:  SLSMPKHQT-----------------TRGCSFFAYPLSVP---KQNPGTGRAKELKQIRSPPPRPWCVGVEHSCRIIHNDSRQRISRLSHR
        SLSMPK                     R  S  A+ L +P   KQN G GRAKEL+     PP     G EHS  I HNDSRQRISRLSHR
Subjt:  SLSMPKHQT-----------------TRGCSFFAYPLSVP---KQNPGTGRAKELKQIRSPPPRPWCVGVEHSCRIIHNDSRQRISRLSHR

A0A4U5PNX9 Uncharacterized protein4.1e-3174.51Show/hide
Query:  MGGGAWPFLVGGAICLVNSVNERDLSLLTSYAEESLR------------------------IPSKRESSARVDYVPALCTHRPSLLPIEWSGEVFGSRRR
        MGGGAWPFLVGGAICLVNSVNERDLSLLTSYAE +LR                        IPSKRESSARVDYVPALCTHRPSLLPIEWSGEVFGSRRR
Subjt:  MGGGAWPFLVGGAICLVNSVNERDLSLLTSYAEESLR------------------------IPSKRESSARVDYVPALCTHRPSLLPIEWSGEVFGSRRR

Query:  GR
        GR
Subjt:  GR

A0A5C7H450 Uncharacterized protein1.8e-3188.1Show/hide
Query:  MGGGAWPFLVGGAICLVNSVNERDLSLLTSYAE------ESLRIPSKRESSARVDYVPALCTHRPSLLPIEWSGEVFGSRRRGR
        MGGGAWPFLVGGAICLVNSVNERDLSLLTSYAE          IPSKRESSARVDYVPALCTHRPSLLPIEWSGEVFGSRRRGR
Subjt:  MGGGAWPFLVGGAICLVNSVNERDLSLLTSYAE------ESLRIPSKRESSARVDYVPALCTHRPSLLPIEWSGEVFGSRRRGR

A0A6A5KZ31 Uncharacterized protein2.0e-3354.02Show/hide
Query:  MGGGAWPFLVGGAICLVNSVNERDLSLLTSYAE------ESLRIPSKRESSARVDYVPALCTHRPSLLPIEWSGEVFGSRRRGR------GRRSRNKVSV
        MGGGAWPFLVGGAICLVNSVNERDLSLLTSY E          IPSKRESSARVDYVPALCTHRPSLLPIEWSGEVFG RRRGR       RR    V  
Subjt:  MGGGAWPFLVGGAICLVNSVNERDLSLLTSYAE------ESLRIPSKRESSARVDYVPALCTHRPSLLPIEWSGEVFGSRRRGR------GRRSRNKVSV

Query:  GEPAEGSLSMPKHQTTRGCSFFAYPLSVPKQNPGTGRAKELKQIRSPPPRPWCVGVEHSCRIIHNDSRQRISRL
          P     + P       C+  ++P +         + K   + R P       GV H+      DSRQRISRL
Subjt:  GEPAEGSLSMPKHQTTRGCSFFAYPLSVPKQNPGTGRAKELKQIRSPPPRPWCVGVEHSCRIIHNDSRQRISRL

A0A6P6FTJ6 LOW QUALITY PROTEIN: uncharacterized protein LOC1124899361.1e-3174.29Show/hide
Query:  MGGGAWPFLVGGAICLVNSVNERDLSLLTSYAEESLR-------------------IPSKRESSARVDYVPALCTHRPSLLPIEWSGEVFGSRRRGRGRR
        MGGGAWPFLVGGAICLVNSVNERDLSLLTSYAE +LR                   IPSKRESSARVDYVPALCTHRPSLLPIEWSGEVFGSRRRGR  R
Subjt:  MGGGAWPFLVGGAICLVNSVNERDLSLLTSYAEESLR-------------------IPSKRESSARVDYVPALCTHRPSLLPIEWSGEVFGSRRRGRGRR

Query:  SRNKV
          + V
Subjt:  SRNKV

SwissProt top hitse value%identityAlignment
No hits found
Arabidopsis top hitse value%identityAlignment
No hits found

Sequences Show/hide sequences
CDS sequenceShow/hide CDS sequence
ATGGGTGGTGGTGCATGGCCGTTCTTAGTTGGTGGAGCGATTTGTCTGGTTAATTCCGTTAACGAACGAGACCTCAGCCTGCTAACTAGCTATGCGGAGGAATCCCTCCG
AATTCCTAGTAAGCGCGAGTCATCAGCTCGCGTTGACTACGTCCCTGCCCTTTGTACACACCGCCCGTCGCTCCTACCGATTGAATGGTCCGGTGAAGTGTTCGGATCGC
GGCGACGTGGGCGAGGAAGGAGAAGTCGTAACAAGGTTTCCGTAGGTGAACCTGCGGAAGGATCATTGTCGATGCCTAAACATCAAACGACCCGGGGATGCAGCTTCTTT
GCTTACCCTCTCTCGGTGCCTAAACAAAACCCCGGCACAGGTCGTGCCAAGGAACTCAAACAAATTCGCTCGCCCCCGCCCCGACCTTGGTGTGTGGGGGTGGAGCATTC
TTGTCGTATTATTCACAACGACTCTCGGCAACGGATATCTCGGCTCTCGCATCGATGA
mRNA sequenceShow/hide mRNA sequence
ATGGGTGGTGGTGCATGGCCGTTCTTAGTTGGTGGAGCGATTTGTCTGGTTAATTCCGTTAACGAACGAGACCTCAGCCTGCTAACTAGCTATGCGGAGGAATCCCTCCG
AATTCCTAGTAAGCGCGAGTCATCAGCTCGCGTTGACTACGTCCCTGCCCTTTGTACACACCGCCCGTCGCTCCTACCGATTGAATGGTCCGGTGAAGTGTTCGGATCGC
GGCGACGTGGGCGAGGAAGGAGAAGTCGTAACAAGGTTTCCGTAGGTGAACCTGCGGAAGGATCATTGTCGATGCCTAAACATCAAACGACCCGGGGATGCAGCTTCTTT
GCTTACCCTCTCTCGGTGCCTAAACAAAACCCCGGCACAGGTCGTGCCAAGGAACTCAAACAAATTCGCTCGCCCCCGCCCCGACCTTGGTGTGTGGGGGTGGAGCATTC
TTGTCGTATTATTCACAACGACTCTCGGCAACGGATATCTCGGCTCTCGCATCGATGA
Protein sequenceShow/hide protein sequence
MGGGAWPFLVGGAICLVNSVNERDLSLLTSYAEESLRIPSKRESSARVDYVPALCTHRPSLLPIEWSGEVFGSRRRGRGRRSRNKVSVGEPAEGSLSMPKHQTTRGCSFF
AYPLSVPKQNPGTGRAKELKQIRSPPPRPWCVGVEHSCRIIHNDSRQRISRLSHR