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Sed0028210 (gene) of Chayote v1 genome

Gene IDSed0028210
OrganismSechium edule (Chayote v1)
Descriptionnuclear transport factor 2
Genome locationLG06:13804876..13806983
RNA-Seq ExpressionSed0028210
SyntenySed0028210
Gene Ontology termsGO:0006913 - nucleocytoplasmic transport (biological process)
GO:0044613 - nuclear pore central transport channel (cellular component)
InterPro domainsIPR002075 - Nuclear transport factor 2
IPR018222 - Nuclear transport factor 2, eukaryote
IPR032710 - NTF2-like domain superfamily


Homology Show/hide homology
GenBank top hitse value%identityAlignment
KAA0056878.1 nuclear transport factor 2 [Cucumis melo var. makuwa]1.9e-1785.19Show/hide
Query:  MEEDQTDIVGKAFVEHYYQLFDNERASVSSLYQPDSMLTFEGQQILGADDVSTK
        MEE+Q DI+GKAFVEHYY LFDNERAS+SSLYQPDSMLTFEGQQILG +D+STK
Subjt:  MEEDQTDIVGKAFVEHYYQLFDNERASVSSLYQPDSMLTFEGQQILGADDVSTK

XP_004153658.1 nuclear transport factor 2B [Cucumis sativus]7.8e-1682.69Show/hide
Query:  EDQTDIVGKAFVEHYYQLFDNERASVSSLYQPDSMLTFEGQQILGADDVSTK
        E++ DI+GKAFVEHYYQLFDNERAS+SSLYQPDSMLTFEGQQILG  D+S+K
Subjt:  EDQTDIVGKAFVEHYYQLFDNERASVSSLYQPDSMLTFEGQQILGADDVSTK

XP_008441397.1 PREDICTED: nuclear transport factor 2 [Cucumis melo]1.9e-1785.19Show/hide
Query:  MEEDQTDIVGKAFVEHYYQLFDNERASVSSLYQPDSMLTFEGQQILGADDVSTK
        MEE+Q DI+GKAFVEHYY LFDNERAS+SSLYQPDSMLTFEGQQILG +D+STK
Subjt:  MEEDQTDIVGKAFVEHYYQLFDNERASVSSLYQPDSMLTFEGQQILGADDVSTK

XP_023519037.1 nuclear transport factor 2B [Cucurbita pepo subsp. pepo]2.7e-1682.69Show/hide
Query:  EDQTDIVGKAFVEHYYQLFDNERASVSSLYQPDSMLTFEGQQILGADDVSTK
        E++TDIVGKAFVEHYYQLFDNER S+S+LYQPDSMLTFEGQQILG DD+S++
Subjt:  EDQTDIVGKAFVEHYYQLFDNERASVSSLYQPDSMLTFEGQQILGADDVSTK

XP_038895004.1 nuclear transport factor 2B [Benincasa hispida]7.1e-1784.62Show/hide
Query:  EDQTDIVGKAFVEHYYQLFDNERASVSSLYQPDSMLTFEGQQILGADDVSTK
        E++ DI+GKAFVEHYYQLFDNERAS+SSLYQPDSMLTFEGQQILG DD+S+K
Subjt:  EDQTDIVGKAFVEHYYQLFDNERASVSSLYQPDSMLTFEGQQILGADDVSTK

TrEMBL top hitse value%identityAlignment
A0A0A0LUU9 NTF2 domain-containing protein3.8e-1682.69Show/hide
Query:  EDQTDIVGKAFVEHYYQLFDNERASVSSLYQPDSMLTFEGQQILGADDVSTK
        E++ DI+GKAFVEHYYQLFDNERAS+SSLYQPDSMLTFEGQQILG  D+S+K
Subjt:  EDQTDIVGKAFVEHYYQLFDNERASVSSLYQPDSMLTFEGQQILGADDVSTK

A0A1S3B3B7 nuclear transport factor 29.0e-1885.19Show/hide
Query:  MEEDQTDIVGKAFVEHYYQLFDNERASVSSLYQPDSMLTFEGQQILGADDVSTK
        MEE+Q DI+GKAFVEHYY LFDNERAS+SSLYQPDSMLTFEGQQILG +D+STK
Subjt:  MEEDQTDIVGKAFVEHYYQLFDNERASVSSLYQPDSMLTFEGQQILGADDVSTK

A0A5D3BKX8 Nuclear transport factor 29.0e-1885.19Show/hide
Query:  MEEDQTDIVGKAFVEHYYQLFDNERASVSSLYQPDSMLTFEGQQILGADDVSTK
        MEE+Q DI+GKAFVEHYY LFDNERAS+SSLYQPDSMLTFEGQQILG +D+STK
Subjt:  MEEDQTDIVGKAFVEHYYQLFDNERASVSSLYQPDSMLTFEGQQILGADDVSTK

A0A6J1CEC9 nuclear transport factor 22.5e-1576.92Show/hide
Query:  EDQTDIVGKAFVEHYYQLFDNERASVSSLYQPDSMLTFEGQQILGADDVSTK
        E+++++VG+AFVEHYYQLFDNERASVSSLYQP+SMLTFEGQ+ILG DD+S++
Subjt:  EDQTDIVGKAFVEHYYQLFDNERASVSSLYQPDSMLTFEGQQILGADDVSTK

A0A6J1F427 nuclear transport factor 2B4.9e-1680.77Show/hide
Query:  EDQTDIVGKAFVEHYYQLFDNERASVSSLYQPDSMLTFEGQQILGADDVSTK
        E++ DIVGKAFVEHYYQLFDNER S+S+LYQPDSMLTFEGQQILG DD+S++
Subjt:  EDQTDIVGKAFVEHYYQLFDNERASVSSLYQPDSMLTFEGQQILGADDVSTK

SwissProt top hitse value%identityAlignment
P87102 Nuclear transport factor 23.4e-0647.83Show/hide
Query:  VGKAFVEHYYQLFDNERASVSSLYQPDSMLTFEGQQILGADDVSTK
        +   FV HYY  FD++R +++ LY+ +SMLTFEG Q LGA  ++ K
Subjt:  VGKAFVEHYYQLFDNERASVSSLYQPDSMLTFEGQQILGADDVSTK

Q86HW7 Nuclear transport factor 22.6e-0651.16Show/hide
Query:  VGKAFVEHYYQLFDNERASVSSLYQPDSMLTFEGQQILGADDV
        VGK FVEHYY +FD+ RA ++ +YQ  + LT+EG+ + GAD +
Subjt:  VGKAFVEHYYQLFDNERASVSSLYQPDSMLTFEGQQILGADDV

Q9C7F5 Nuclear transport factor 2B1.6e-0851.85Show/hide
Query:  MEEDQTDIVGKAFVEHYYQLFDNERASVSSLYQPDSMLTFEGQQILGADDVSTK
        M +   D V KAFVEHYY  FD  R  ++ LYQ  SMLTFEGQ+I G   +  K
Subjt:  MEEDQTDIVGKAFVEHYYQLFDNERASVSSLYQPDSMLTFEGQQILGADDVSTK

Q9FZK4 Nuclear transport factor 2A2.1e-0858.33Show/hide
Query:  DIVGKAFVEHYYQLFDNERASVSSLYQPDSMLTFEGQQILGADDVSTK
        D V KAFVEHYY  FD  R  + SLYQ  SMLTFEGQ+I G+ ++  K
Subjt:  DIVGKAFVEHYYQLFDNERASVSSLYQPDSMLTFEGQQILGADDVSTK

Q9XJ54 Nuclear transport factor 21.9e-0962.5Show/hide
Query:  DIVGKAFVEHYYQLFDNERASVSSLYQPDSMLTFEGQQILGADDVSTK
        D V KAFVEHYY+ FD  R ++ SLYQ  SMLTFEGQQ LGA  ++ K
Subjt:  DIVGKAFVEHYYQLFDNERASVSSLYQPDSMLTFEGQQILGADDVSTK

Arabidopsis top hitse value%identityAlignment
AT1G11570.1 NTF2-like4.3e-1265.22Show/hide
Query:  VGKAFVEHYYQLFDNERASVSSLYQPDSMLTFEGQQILGADDVSTK
        V  AFV HYY LFDN+R+S+SSLY P S+LTFEGQ I G D++S K
Subjt:  VGKAFVEHYYQLFDNERASVSSLYQPDSMLTFEGQQILGADDVSTK

AT1G11570.2 NTF2-like4.3e-1265.22Show/hide
Query:  VGKAFVEHYYQLFDNERASVSSLYQPDSMLTFEGQQILGADDVSTK
        V  AFV HYY LFDN+R+S+SSLY P S+LTFEGQ I G D++S K
Subjt:  VGKAFVEHYYQLFDNERASVSSLYQPDSMLTFEGQQILGADDVSTK

AT1G27310.1 nuclear transport factor 2A1.5e-0958.33Show/hide
Query:  DIVGKAFVEHYYQLFDNERASVSSLYQPDSMLTFEGQQILGADDVSTK
        D V KAFVEHYY  FD  R  + SLYQ  SMLTFEGQ+I G+ ++  K
Subjt:  DIVGKAFVEHYYQLFDNERASVSSLYQPDSMLTFEGQQILGADDVSTK

AT1G27970.1 nuclear transport factor 2B1.2e-0951.85Show/hide
Query:  MEEDQTDIVGKAFVEHYYQLFDNERASVSSLYQPDSMLTFEGQQILGADDVSTK
        M +   D V KAFVEHYY  FD  R  ++ LYQ  SMLTFEGQ+I G   +  K
Subjt:  MEEDQTDIVGKAFVEHYYQLFDNERASVSSLYQPDSMLTFEGQQILGADDVSTK

AT1G27970.2 nuclear transport factor 2B1.2e-0951.85Show/hide
Query:  MEEDQTDIVGKAFVEHYYQLFDNERASVSSLYQPDSMLTFEGQQILGADDVSTK
        M +   D V KAFVEHYY  FD  R  ++ LYQ  SMLTFEGQ+I G   +  K
Subjt:  MEEDQTDIVGKAFVEHYYQLFDNERASVSSLYQPDSMLTFEGQQILGADDVSTK


Sequences Show/hide sequences
CDS sequenceShow/hide CDS sequence
ATGGAAGAAGATCAGACTGATATTGTAGGGAAGGCGTTTGTGGAACATTACTACCAATTGTTCGACAACGAAAGAGCCTCTGTTTCTTCTTTGTACCAACCCGACTCCAT
GCTCACTTTCGAAGGCCAGCAAATCTTAGGCGCTGACGACGTCTCTACTAAGTTTTATGATAAACAAGAAAATGACATTGACTTCAAAATACACTACTACAAAAAACAGT
ATAGTTGA
mRNA sequenceShow/hide mRNA sequence
ATGGAAGAAGATCAGACTGATATTGTAGGGAAGGCGTTTGTGGAACATTACTACCAATTGTTCGACAACGAAAGAGCCTCTGTTTCTTCTTTGTACCAACCCGACTCCAT
GCTCACTTTCGAAGGCCAGCAAATCTTAGGCGCTGACGACGTCTCTACTAAGTTTTATGATAAACAAGAAAATGACATTGACTTCAAAATACACTACTACAAAAAACAGT
ATAGTTGA
Protein sequenceShow/hide protein sequence
MEEDQTDIVGKAFVEHYYQLFDNERASVSSLYQPDSMLTFEGQQILGADDVSTKFYDKQENDIDFKIHYYKKQYS