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Sed0028234 (gene) of Chayote v1 genome

Gene IDSed0028234
OrganismSechium edule (Chayote v1)
DescriptionUPF0400 protein C337.03-like
Genome locationLG11:36056056..36056922
RNA-Seq ExpressionSed0028234
SyntenySed0028234
Gene Ontology termsNA
InterPro domainsNA


Homology Show/hide homology
GenBank top hitse value%identityAlignment
KAG7033391.1 Regulation of nuclear pre-mRNA domain-containing protein 1B [Cucurbita argyrosperma subsp. argyrosperma]2.9e-0850.59Show/hide
Query:  PIPIPSPSP----SQNKHRISTVSSAVMYAGSLPEFS--GNPSVGAPVSGISPL------YQSFQASDDNFYNQSSSMPMAPISR
        P PIP   P    +QN   +S++  +     SLP  +  G P+VGAPV+G+SP       YQSFQ SD NFYNQSSSMPMAP+SR
Subjt:  PIPIPSPSP----SQNKHRISTVSSAVMYAGSLPEFS--GNPSVGAPVSGISPL------YQSFQASDDNFYNQSSSMPMAPISR

XP_022989894.1 UPF0400 protein C337.03-like [Cucurbita maxima]2.2e-0850.6Show/hide
Query:  PIPIPIPSPSPSQNKHRISTVSSAVMYAGSLPEFS--GNPSVGAPVSGISPL------YQSFQASDDNFYNQSSSMPMAPISR
        PIP   P+   +QN   +S++  +     SLP  +  G P+VGAPV+G+SP       YQSFQ SD NFYNQSSSMPMAP+SR
Subjt:  PIPIPIPSPSPSQNKHRISTVSSAVMYAGSLPEFS--GNPSVGAPVSGISPL------YQSFQASDDNFYNQSSSMPMAPISR

XP_023517949.1 regulation of nuclear pre-mRNA domain-containing protein 1B-like [Cucurbita pepo subsp. pepo]2.9e-0850.59Show/hide
Query:  PIPIPSPSP----SQNKHRISTVSSAVMYAGSLPEFS--GNPSVGAPVSGISPL------YQSFQASDDNFYNQSSSMPMAPISR
        P PIP   P    +QN   +S++  +     SLP  +  G P+VGAPV+G+SP       YQSFQASD NFYNQSSSMPM P+SR
Subjt:  PIPIPSPSP----SQNKHRISTVSSAVMYAGSLPEFS--GNPSVGAPVSGISPL------YQSFQASDDNFYNQSSSMPMAPISR

XP_023518227.1 histone-lysine N-methyltransferase 2B-like [Cucurbita pepo subsp. pepo]2.9e-0850.59Show/hide
Query:  PIPIPSPSP----SQNKHRISTVSSAVMYAGSLPEFS--GNPSVGAPVSGISPL------YQSFQASDDNFYNQSSSMPMAPISR
        P PIP   P    +QN   +S++  +     SLP  +  G P+VGAPV+G+SP       YQSFQASD NFYNQSSSMPM P+SR
Subjt:  PIPIPSPSP----SQNKHRISTVSSAVMYAGSLPEFS--GNPSVGAPVSGISPL------YQSFQASDDNFYNQSSSMPMAPISR

XP_038884747.1 UPF0400 protein C337.03 [Benincasa hispida]1.5e-0951.76Show/hide
Query:  LPIPIPIPSPSPSQNKHRISTVSSAVMYAGSLPEFS--GNPSVGAPVSGISPL------YQSFQASDDNFYNQSSSMPMAPISRQ
        LP     P P  +QN   +S++  +     SLP  +  G P+VGAPV+G+SP       YQSFQA D NFYNQSSSMPMAPISRQ
Subjt:  LPIPIPIPSPSPSQNKHRISTVSSAVMYAGSLPEFS--GNPSVGAPVSGISPL------YQSFQASDDNFYNQSSSMPMAPISRQ

TrEMBL top hitse value%identityAlignment
A0A1S3B3S0 UPF0400 protein C337.03 isoform X22.4e-0849.43Show/hide
Query:  LPIPIPIPSPSPSQNKHRISTVSSAVMYA--GSLPEFS--GNPSVGAPVSGISPL------YQSFQASDDNFYNQSSSMPMAPISRQ
        LP     P P  +QN   +S++     Y+   SLP  +  G P+ GAPV+G+SP       YQ+FQA D NFYNQSSSMPMAPISRQ
Subjt:  LPIPIPIPSPSPSQNKHRISTVSSAVMYA--GSLPEFS--GNPSVGAPVSGISPL------YQSFQASDDNFYNQSSSMPMAPISRQ

A0A5D3C5Q5 UPF0400 protein isoform X12.4e-0849.43Show/hide
Query:  LPIPIPIPSPSPSQNKHRISTVSSAVMYA--GSLPEFS--GNPSVGAPVSGISPL------YQSFQASDDNFYNQSSSMPMAPISRQ
        LP     P P  +QN   +S++     Y+   SLP  +  G P+ GAPV+G+SP       YQ+FQA D NFYNQSSSMPMAPISRQ
Subjt:  LPIPIPIPSPSPSQNKHRISTVSSAVMYA--GSLPEFS--GNPSVGAPVSGISPL------YQSFQASDDNFYNQSSSMPMAPISRQ

A0A6J1DG44 UPF0400 protein C337.032.4e-0848.24Show/hide
Query:  LPIPIPIPSPSPSQNKHRISTVSSAVMYAGSLPEFS--GNPSVGAPVSGISPL------YQSFQASDDNFYNQSSSMPMAPISRQ
        LP  +  P P  +QN   +S+V  +      L   +  G P+VG PV+G+SP       YQ+FQASD NFYNQSSSMPMAP+SRQ
Subjt:  LPIPIPIPSPSPSQNKHRISTVSSAVMYAGSLPEFS--GNPSVGAPVSGISPL------YQSFQASDDNFYNQSSSMPMAPISRQ

A0A6J1JNM2 UPF0400 protein C337.03-like1.1e-0850.6Show/hide
Query:  PIPIPIPSPSPSQNKHRISTVSSAVMYAGSLPEFS--GNPSVGAPVSGISPL------YQSFQASDDNFYNQSSSMPMAPISR
        PIP   P+   +QN   +S++  +     SLP  +  G P+VGAPV+G+SP       YQSFQ SD NFYNQSSSMPMAP+SR
Subjt:  PIPIPIPSPSPSQNKHRISTVSSAVMYAGSLPEFS--GNPSVGAPVSGISPL------YQSFQASDDNFYNQSSSMPMAPISR

E5GB39 CID domain-containing protein2.4e-0849.43Show/hide
Query:  LPIPIPIPSPSPSQNKHRISTVSSAVMYA--GSLPEFS--GNPSVGAPVSGISPL------YQSFQASDDNFYNQSSSMPMAPISRQ
        LP     P P  +QN   +S++     Y+   SLP  +  G P+ GAPV+G+SP       YQ+FQA D NFYNQSSSMPMAPISRQ
Subjt:  LPIPIPIPSPSPSQNKHRISTVSSAVMYA--GSLPEFS--GNPSVGAPVSGISPL------YQSFQASDDNFYNQSSSMPMAPISRQ

SwissProt top hitse value%identityAlignment
No hits found
Arabidopsis top hitse value%identityAlignment
No hits found

Sequences Show/hide sequences
CDS sequenceShow/hide CDS sequence
ATGACACTCTGTACAAATATATCAGAAGATAAGAATAAGGTTATTGGGTACTGGCCACTAGCTTTTATATATTTTGATAGGCTTCCCATTCCCATTCCCATTCCCAGTCC
CAGTCCCAGTCAGAACAAACACAGAATCTCTACCGTCAGTTCAGCGGTAATGTATGCAGGCTCATTACCAGAGTTTTCAGGCAATCCAAGTGTAGGTGCACCGGTGAGTG
GGATTTCTCCTTTATACCAGAGTTTTCAGGCTTCAGATGATAATTTCTATAATCAATCATCATCCATGCCGATGGCACCAATTTCTAGGCAATAG
mRNA sequenceShow/hide mRNA sequence
ATGACACTCTGTACAAATATATCAGAAGATAAGAATAAGGTTATTGGGTACTGGCCACTAGCTTTTATATATTTTGATAGGCTTCCCATTCCCATTCCCATTCCCAGTCC
CAGTCCCAGTCAGAACAAACACAGAATCTCTACCGTCAGTTCAGCGGTAATGTATGCAGGCTCATTACCAGAGTTTTCAGGCAATCCAAGTGTAGGTGCACCGGTGAGTG
GGATTTCTCCTTTATACCAGAGTTTTCAGGCTTCAGATGATAATTTCTATAATCAATCATCATCCATGCCGATGGCACCAATTTCTAGGCAATAG
Protein sequenceShow/hide protein sequence
MTLCTNISEDKNKVIGYWPLAFIYFDRLPIPIPIPSPSPSQNKHRISTVSSAVMYAGSLPEFSGNPSVGAPVSGISPLYQSFQASDDNFYNQSSSMPMAPISRQ