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Sgr004969 (gene) of Monk fruit (Qingpiguo) v1 genome

Gene IDSgr004969
OrganismSiraitia grosvenorii cv. Qingpiguo (Monk fruit (Qingpiguo) v1)
DescriptionSmall nuclear ribonucleoprotein Sm D1
Genome locationtig00003469:226704..232080
RNA-Seq ExpressionSgr004969
SyntenySgr004969
Gene Ontology termsGO:0000387 - spliceosomal snRNP assembly (biological process)
GO:0034715 - pICln-Sm protein complex (cellular component)
GO:0097526 - spliceosomal tri-snRNP complex (cellular component)
GO:0071013 - catalytic step 2 spliceosome (cellular component)
GO:0071011 - precatalytic spliceosome (cellular component)
GO:0034719 - SMN-Sm protein complex (cellular component)
GO:0000243 - commitment complex (cellular component)
GO:0016021 - integral component of membrane (cellular component)
GO:0005689 - U12-type spliceosomal complex (cellular component)
GO:0005687 - U4 snRNP (cellular component)
GO:0005686 - U2 snRNP (cellular component)
GO:0005685 - U1 snRNP (cellular component)
GO:0005682 - U5 snRNP (cellular component)
GO:0003723 - RNA binding (molecular function)
InterPro domainsIPR001163 - LSM domain, eukaryotic/archaea-type
IPR010920 - LSM domain superfamily
IPR027141 - Like-Sm (LSM) domain containing protein, LSm4/SmD1/SmD3
IPR034102 - Small nuclear ribonucleoprotein D1


Homology Show/hide homology
GenBank top hitse value%identityAlignment
PPD72193.1 hypothetical protein GOBAR_DD30914 [Gossypium barbadense]3.8e-4388.89Show/hide
Query:  MKLVRFLMKLNNETVSIELKNGTVVHGTITGVDISMNTHLKAVKLTLKGKNPVTMDHLSVRGNNIRYYILPDSLNLETLLVEETPRVKPKKPTAVVSIFV
        MKLVRFLMKLNNETVSIELKNGTVVHGTITGVDISMNTHLK VKLTLKGKNPVT+DHLSVRGNNIRYYILPDSLNLETLLVEETPRVKPKKPTA +  F 
Subjt:  MKLVRFLMKLNNETVSIELKNGTVVHGTITGVDISMNTHLKAVKLTLKGKNPVTMDHLSVRGNNIRYYILPDSLNLETLLVEETPRVKPKKPTAVVSIFV

Query:  PRSVNTCI
        P +V  C+
Subjt:  PRSVNTCI

TXG63624.1 hypothetical protein EZV62_010618 [Acer yangbiense]1.3e-4379.84Show/hide
Query:  MKLVRFLMKLNNETVSIELKNGTVVHGTITGVDISMNTHLKAVKLTLKGKNPVTMDHLSVRGNNIRYYILPDSLNLETLLVEETPRVKPKKPTA----VV
        MKLVRFLMKLNNETVSIELKNGT+VHGTITGVDISMNTHLKAVKLTLKGKNPVT+DHLSVRGNNIRYYILPDSLNLETLLVEETPRVKPKKPTA    VV
Subjt:  MKLVRFLMKLNNETVSIELKNGTVVHGTITGVDISMNTHLKAVKLTLKGKNPVTMDHLSVRGNNIRYYILPDSLNLETLLVEETPRVKPKKPTA----VV

Query:  SIFVPRSVNTCIAGKVYEFSDMEK
        +I+V   V   + G + +   M++
Subjt:  SIFVPRSVNTCIAGKVYEFSDMEK

XP_004150106.1 small nuclear ribonucleoprotein SmD1b [Cucumis sativus]3.8e-43100Show/hide
Query:  MKLVRFLMKLNNETVSIELKNGTVVHGTITGVDISMNTHLKAVKLTLKGKNPVTMDHLSVRGNNIRYYILPDSLNLETLLVEETPRVKPKKPTA
        MKLVRFLMKLNNETVSIELKNGTVVHGTITGVDISMNTHLKAVKLTLKGKNPVTMDHLSVRGNNIRYYILPDSLNLETLLVEETPRVKPKKPTA
Subjt:  MKLVRFLMKLNNETVSIELKNGTVVHGTITGVDISMNTHLKAVKLTLKGKNPVTMDHLSVRGNNIRYYILPDSLNLETLLVEETPRVKPKKPTA

XP_022931093.1 small nuclear ribonucleoprotein SmD1b [Cucurbita moschata]3.8e-43100Show/hide
Query:  MKLVRFLMKLNNETVSIELKNGTVVHGTITGVDISMNTHLKAVKLTLKGKNPVTMDHLSVRGNNIRYYILPDSLNLETLLVEETPRVKPKKPTA
        MKLVRFLMKLNNETVSIELKNGTVVHGTITGVDISMNTHLKAVKLTLKGKNPVTMDHLSVRGNNIRYYILPDSLNLETLLVEETPRVKPKKPTA
Subjt:  MKLVRFLMKLNNETVSIELKNGTVVHGTITGVDISMNTHLKAVKLTLKGKNPVTMDHLSVRGNNIRYYILPDSLNLETLLVEETPRVKPKKPTA

XP_022963993.1 small nuclear ribonucleoprotein SmD1b-like [Cucurbita moschata]3.8e-43100Show/hide
Query:  MKLVRFLMKLNNETVSIELKNGTVVHGTITGVDISMNTHLKAVKLTLKGKNPVTMDHLSVRGNNIRYYILPDSLNLETLLVEETPRVKPKKPTA
        MKLVRFLMKLNNETVSIELKNGTVVHGTITGVDISMNTHLKAVKLTLKGKNPVTMDHLSVRGNNIRYYILPDSLNLETLLVEETPRVKPKKPTA
Subjt:  MKLVRFLMKLNNETVSIELKNGTVVHGTITGVDISMNTHLKAVKLTLKGKNPVTMDHLSVRGNNIRYYILPDSLNLETLLVEETPRVKPKKPTA

TrEMBL top hitse value%identityAlignment
A0A067FZA3 Small nuclear ribonucleoprotein Sm D11.8e-4385.19Show/hide
Query:  MKLVRFLMKLNNETVSIELKNGTVVHGTITGVDISMNTHLKAVKLTLKGKNPVTMDHLSVRGNNIRYYILPDSLNLETLLVEETPRVKPKKPTAVVSIFV
        MKLVRFLMKLNNETVSIELKNGT+VHGTITGVDISMNTHLK VKLTLKGKNPV +DHLSVRGNNIRYYILPDSLNLETLLVEETPRVKPKKPTA + I  
Subjt:  MKLVRFLMKLNNETVSIELKNGTVVHGTITGVDISMNTHLKAVKLTLKGKNPVTMDHLSVRGNNIRYYILPDSLNLETLLVEETPRVKPKKPTAVVSIFV

Query:  PRSVNTCI
           +++C+
Subjt:  PRSVNTCI

A0A0A0LD16 Small nuclear ribonucleoprotein Sm D11.8e-43100Show/hide
Query:  MKLVRFLMKLNNETVSIELKNGTVVHGTITGVDISMNTHLKAVKLTLKGKNPVTMDHLSVRGNNIRYYILPDSLNLETLLVEETPRVKPKKPTA
        MKLVRFLMKLNNETVSIELKNGTVVHGTITGVDISMNTHLKAVKLTLKGKNPVTMDHLSVRGNNIRYYILPDSLNLETLLVEETPRVKPKKPTA
Subjt:  MKLVRFLMKLNNETVSIELKNGTVVHGTITGVDISMNTHLKAVKLTLKGKNPVTMDHLSVRGNNIRYYILPDSLNLETLLVEETPRVKPKKPTA

A0A5C7I3G1 Small nuclear ribonucleoprotein Sm D16.2e-4479.84Show/hide
Query:  MKLVRFLMKLNNETVSIELKNGTVVHGTITGVDISMNTHLKAVKLTLKGKNPVTMDHLSVRGNNIRYYILPDSLNLETLLVEETPRVKPKKPTA----VV
        MKLVRFLMKLNNETVSIELKNGT+VHGTITGVDISMNTHLKAVKLTLKGKNPVT+DHLSVRGNNIRYYILPDSLNLETLLVEETPRVKPKKPTA    VV
Subjt:  MKLVRFLMKLNNETVSIELKNGTVVHGTITGVDISMNTHLKAVKLTLKGKNPVTMDHLSVRGNNIRYYILPDSLNLETLLVEETPRVKPKKPTA----VV

Query:  SIFVPRSVNTCIAGKVYEFSDMEK
        +I+V   V   + G + +   M++
Subjt:  SIFVPRSVNTCIAGKVYEFSDMEK

A0A6J1DVC4 Small nuclear ribonucleoprotein Sm D11.8e-43100Show/hide
Query:  MKLVRFLMKLNNETVSIELKNGTVVHGTITGVDISMNTHLKAVKLTLKGKNPVTMDHLSVRGNNIRYYILPDSLNLETLLVEETPRVKPKKPTA
        MKLVRFLMKLNNETVSIELKNGTVVHGTITGVDISMNTHLKAVKLTLKGKNPVTMDHLSVRGNNIRYYILPDSLNLETLLVEETPRVKPKKPTA
Subjt:  MKLVRFLMKLNNETVSIELKNGTVVHGTITGVDISMNTHLKAVKLTLKGKNPVTMDHLSVRGNNIRYYILPDSLNLETLLVEETPRVKPKKPTA

A0A6J1K070 Small nuclear ribonucleoprotein Sm D11.8e-43100Show/hide
Query:  MKLVRFLMKLNNETVSIELKNGTVVHGTITGVDISMNTHLKAVKLTLKGKNPVTMDHLSVRGNNIRYYILPDSLNLETLLVEETPRVKPKKPTA
        MKLVRFLMKLNNETVSIELKNGTVVHGTITGVDISMNTHLKAVKLTLKGKNPVTMDHLSVRGNNIRYYILPDSLNLETLLVEETPRVKPKKPTA
Subjt:  MKLVRFLMKLNNETVSIELKNGTVVHGTITGVDISMNTHLKAVKLTLKGKNPVTMDHLSVRGNNIRYYILPDSLNLETLLVEETPRVKPKKPTA

SwissProt top hitse value%identityAlignment
P62314 Small nuclear ribonucleoprotein Sm D18.1e-3374.74Show/hide
Query:  MKLVRFLMKLNNETVSIELKNGTVVHGTITGVDISMNTHLKAVKLTLKGKNPVTMDHLSVRGNNIRYYILPDSLNLETLLVEETPRVKPKKPTAV
        MKLVRFLMKL++ETV+IELKNGT VHGTITGVD+SMNTHLKAVK+TLK + PV ++ LS+RGNNIRY+ILPDSL L+TLLV+  P+VK KK  AV
Subjt:  MKLVRFLMKLNNETVSIELKNGTVVHGTITGVDISMNTHLKAVKLTLKGKNPVTMDHLSVRGNNIRYYILPDSLNLETLLVEETPRVKPKKPTAV

Q3ZC10 Small nuclear ribonucleoprotein Sm D18.1e-3374.74Show/hide
Query:  MKLVRFLMKLNNETVSIELKNGTVVHGTITGVDISMNTHLKAVKLTLKGKNPVTMDHLSVRGNNIRYYILPDSLNLETLLVEETPRVKPKKPTAV
        MKLVRFLMKL++ETV+IELKNGT VHGTITGVD+SMNTHLKAVK+TLK + PV ++ LS+RGNNIRY+ILPDSL L+TLLV+  P+VK KK  AV
Subjt:  MKLVRFLMKLNNETVSIELKNGTVVHGTITGVDISMNTHLKAVKLTLKGKNPVTMDHLSVRGNNIRYYILPDSLNLETLLVEETPRVKPKKPTAV

Q4R5F6 Small nuclear ribonucleoprotein Sm D18.1e-3374.74Show/hide
Query:  MKLVRFLMKLNNETVSIELKNGTVVHGTITGVDISMNTHLKAVKLTLKGKNPVTMDHLSVRGNNIRYYILPDSLNLETLLVEETPRVKPKKPTAV
        MKLVRFLMKL++ETV+IELKNGT VHGTITGVD+SMNTHLKAVK+TLK + PV ++ LS+RGNNIRY+ILPDSL L+TLLV+  P+VK KK  AV
Subjt:  MKLVRFLMKLNNETVSIELKNGTVVHGTITGVDISMNTHLKAVKLTLKGKNPVTMDHLSVRGNNIRYYILPDSLNLETLLVEETPRVKPKKPTAV

Q9SSF1 Small nuclear ribonucleoprotein SmD1a3.9e-4391.49Show/hide
Query:  MKLVRFLMKLNNETVSIELKNGTVVHGTITGVDISMNTHLKAVKLTLKGKNPVTMDHLSVRGNNIRYYILPDSLNLETLLVEETPRVKPKKPTA
        MKLVRFLMKLNNETVSIELKNGTVVHGTITGVD+SMNTHLK VK++LKGKNPVT+DHLS+RGNNIRYYILPDSLNLETLLVE+TPRVKPKKP A
Subjt:  MKLVRFLMKLNNETVSIELKNGTVVHGTITGVDISMNTHLKAVKLTLKGKNPVTMDHLSVRGNNIRYYILPDSLNLETLLVEETPRVKPKKPTA

Q9SY09 Small nuclear ribonucleoprotein SmD1b5.4e-4594.68Show/hide
Query:  MKLVRFLMKLNNETVSIELKNGTVVHGTITGVDISMNTHLKAVKLTLKGKNPVTMDHLSVRGNNIRYYILPDSLNLETLLVEETPRVKPKKPTA
        MKLVRFLMKLNNETVSIELKNGT+VHGTITGVD+SMNTHLKAVKLTLKGKNPVT+DHLSVRGNNIRYYILPDSLNLETLLVE+TPR+KPKKPTA
Subjt:  MKLVRFLMKLNNETVSIELKNGTVVHGTITGVDISMNTHLKAVKLTLKGKNPVTMDHLSVRGNNIRYYILPDSLNLETLLVEETPRVKPKKPTA

Arabidopsis top hitse value%identityAlignment
AT1G20580.1 Small nuclear ribonucleoprotein family protein4.3e-0525.29Show/hide
Query:  VRFLMKLNNETVSIELKNGTVVHGTITGVDISMNTHLKAVKLTLKGKNPVTMDHLSVRGNNIRYYILPDSLNLETLLVEETPRVKPK
        V+ L + +   V++ELK+G +  G++   + + N  L+ +  T K      ++H+ +RG+ +R+ ++PD L    +      R+K K
Subjt:  VRFLMKLNNETVSIELKNGTVVHGTITGVDISMNTHLKAVKLTLKGKNPVTMDHLSVRGNNIRYYILPDSLNLETLLVEETPRVKPK

AT3G07590.1 Small nuclear ribonucleoprotein family protein2.8e-4491.49Show/hide
Query:  MKLVRFLMKLNNETVSIELKNGTVVHGTITGVDISMNTHLKAVKLTLKGKNPVTMDHLSVRGNNIRYYILPDSLNLETLLVEETPRVKPKKPTA
        MKLVRFLMKLNNETVSIELKNGTVVHGTITGVD+SMNTHLK VK++LKGKNPVT+DHLS+RGNNIRYYILPDSLNLETLLVE+TPRVKPKKP A
Subjt:  MKLVRFLMKLNNETVSIELKNGTVVHGTITGVDISMNTHLKAVKLTLKGKNPVTMDHLSVRGNNIRYYILPDSLNLETLLVEETPRVKPKKPTA

AT3G07590.2 Small nuclear ribonucleoprotein family protein2.8e-4491.49Show/hide
Query:  MKLVRFLMKLNNETVSIELKNGTVVHGTITGVDISMNTHLKAVKLTLKGKNPVTMDHLSVRGNNIRYYILPDSLNLETLLVEETPRVKPKKPTA
        MKLVRFLMKLNNETVSIELKNGTVVHGTITGVD+SMNTHLK VK++LKGKNPVT+DHLS+RGNNIRYYILPDSLNLETLLVE+TPRVKPKKP A
Subjt:  MKLVRFLMKLNNETVSIELKNGTVVHGTITGVDISMNTHLKAVKLTLKGKNPVTMDHLSVRGNNIRYYILPDSLNLETLLVEETPRVKPKKPTA

AT4G02840.1 Small nuclear ribonucleoprotein family protein3.9e-4694.68Show/hide
Query:  MKLVRFLMKLNNETVSIELKNGTVVHGTITGVDISMNTHLKAVKLTLKGKNPVTMDHLSVRGNNIRYYILPDSLNLETLLVEETPRVKPKKPTA
        MKLVRFLMKLNNETVSIELKNGT+VHGTITGVD+SMNTHLKAVKLTLKGKNPVT+DHLSVRGNNIRYYILPDSLNLETLLVE+TPR+KPKKPTA
Subjt:  MKLVRFLMKLNNETVSIELKNGTVVHGTITGVDISMNTHLKAVKLTLKGKNPVTMDHLSVRGNNIRYYILPDSLNLETLLVEETPRVKPKKPTA

AT4G02840.2 Small nuclear ribonucleoprotein family protein1.1e-4385.58Show/hide
Query:  MKLVRFLMKLNNETVSIELKNGTVVHGTIT----------GVDISMNTHLKAVKLTLKGKNPVTMDHLSVRGNNIRYYILPDSLNLETLLVEETPRVKPK
        MKLVRFLMKLNNETVSIELKNGT+VHGTIT          GVD+SMNTHLKAVKLTLKGKNPVT+DHLSVRGNNIRYYILPDSLNLETLLVE+TPR+KPK
Subjt:  MKLVRFLMKLNNETVSIELKNGTVVHGTIT----------GVDISMNTHLKAVKLTLKGKNPVTMDHLSVRGNNIRYYILPDSLNLETLLVEETPRVKPK

Query:  KPTA
        KPTA
Subjt:  KPTA


Sequences Show/hide sequences
CDS sequenceShow/hide CDS sequence
ATGAAGCTCGTCAGGTTTTTGATGAAGCTCAACAATGAGACTGTCTCAATCGAGCTCAAAAATGGAACCGTTGTCCATGGCACTATCACAGGTGTGGATATTAGCATGAA
TACTCATTTGAAGGCTGTGAAACTTACCCTAAAGGGGAAAAATCCAGTTACCATGGATCATTTAAGTGTGAGAGGTAACAACATCAGATATTATATTCTCCCTGACAGCT
TGAATCTTGAGACTTTACTTGTTGAAGAGACACCCAGGGTCAAGCCCAAGAAACCAACTGCAGTTGTTTCAATTTTTGTGCCCCGTAGTGTAAACACATGTATCGCAGGG
AAAGTTTATGAATTTAGTGACATGGAGAAGTGGTATGACAATTTACTGTCCAATCTCATGTTTTTTACAATGCCATCTACTTGTTTTTTTATGATTGATGAACCTTTGCT
GTATTTTGTTGTGCCTGGATCCGCCCCTATAATGATTTACTCGAATGTCATCACAATGATCGAACTCTGGCACTTAGAGGTTCTAAAGCTTAACCTCAGCTTCAGCTTCG
AACCTGCCTGA
mRNA sequenceShow/hide mRNA sequence
ATGAAGCTCGTCAGGTTTTTGATGAAGCTCAACAATGAGACTGTCTCAATCGAGCTCAAAAATGGAACCGTTGTCCATGGCACTATCACAGGTGTGGATATTAGCATGAA
TACTCATTTGAAGGCTGTGAAACTTACCCTAAAGGGGAAAAATCCAGTTACCATGGATCATTTAAGTGTGAGAGGTAACAACATCAGATATTATATTCTCCCTGACAGCT
TGAATCTTGAGACTTTACTTGTTGAAGAGACACCCAGGGTCAAGCCCAAGAAACCAACTGCAGTTGTTTCAATTTTTGTGCCCCGTAGTGTAAACACATGTATCGCAGGG
AAAGTTTATGAATTTAGTGACATGGAGAAGTGGTATGACAATTTACTGTCCAATCTCATGTTTTTTACAATGCCATCTACTTGTTTTTTTATGATTGATGAACCTTTGCT
GTATTTTGTTGTGCCTGGATCCGCCCCTATAATGATTTACTCGAATGTCATCACAATGATCGAACTCTGGCACTTAGAGGTTCTAAAGCTTAACCTCAGCTTCAGCTTCG
AACCTGCCTGA
Protein sequenceShow/hide protein sequence
MKLVRFLMKLNNETVSIELKNGTVVHGTITGVDISMNTHLKAVKLTLKGKNPVTMDHLSVRGNNIRYYILPDSLNLETLLVEETPRVKPKKPTAVVSIFVPRSVNTCIAG
KVYEFSDMEKWYDNLLSNLMFFTMPSTCFFMIDEPLLYFVVPGSAPIMIYSNVITMIELWHLEVLKLNLSFSFEPA