; ; ; ; ; ; ; ; ; ; ; ; ; ; ; ; ; ; ; CuGenDBv2

Sgr006980 (gene) of Monk fruit (Qingpiguo) v1 genome

Gene IDSgr006980
OrganismSiraitia grosvenorii cv. Qingpiguo (Monk fruit (Qingpiguo) v1)
DescriptionSmall nuclear ribonucleoprotein-associated protein
Genome locationtig00005125:7787..8638
RNA-Seq ExpressionSgr006980
SyntenySgr006980
Gene Ontology termsGO:0000398 - mRNA splicing, via spliceosome (biological process)
GO:0005682 - U5 snRNP (cellular component)
GO:0005685 - U1 snRNP (cellular component)
GO:0005686 - U2 snRNP (cellular component)
GO:0005687 - U4 snRNP (cellular component)
GO:0005737 - cytoplasm (cellular component)
GO:0046540 - U4/U6 x U5 tri-snRNP complex (cellular component)
GO:0071004 - U2-type prespliceosome (cellular component)
GO:0071013 - catalytic step 2 spliceosome (cellular component)
GO:0003723 - RNA binding (molecular function)
InterPro domainsIPR001163 - LSM domain, eukaryotic/archaea-type
IPR010920 - LSM domain superfamily
IPR017131 - Small ribonucleoprotein associated, SmB/SmN


Homology Show/hide homology
GenBank top hitse value%identityAlignment
KAA0052454.1 small nuclear ribonucleoprotein-associated proteins B and B' [Cucumis melo var. makuwa]3.4e-11484.04Show/hide
Query:  MSKSSKMLQYINYRMRVTIQDGRQLVGKFMAFDRHMNLVLGDCEEFRKLPPAKGKKTNEERDERRTLGLVLLRGEEVISMTVEGPPPAEESRAKAVNAAA
        MSKSSKMLQYINYRMRVTIQDGRQLVGKFMAFDRHMNLVLGDCEEFRKLPPAKGKKTNEERDERRTLGLVLLRGEEVISMTVEGPPPAEESRAKAVNAAA
Subjt:  MSKSSKMLQYINYRMRVTIQDGRQLVGKFMAFDRHMNLVLGDCEEFRKLPPAKGKKTNEERDERRTLGLVLLRGEEVISMTVEGPPPAEESRAKAVNAAA

Query:  MAGPGIGRASGRGIPTAPLVQAQPGLAGPVRGVGGPAPGMMQPQISRPPVPQLSAPPMTYPPA-----PGEVCRL---------RCL------HRNSQQL
        MAGPGIGRA+GRGIPTAPLVQAQPGLAGPVRGVGGPAPGMMQPQISRPPVPQLSAPPMTYP A     PG++            R +       + S   
Subjt:  MAGPGIGRASGRGIPTAPLVQAQPGLAGPVRGVGGPAPGMMQPQISRPPVPQLSAPPMTYPPA-----PGEVCRL---------RCL------HRNSQQL

Query:  DQGSPATTIPSSPQFAQRPMGPPPTGQVMRGPPPPPRPGMPAPPPRPGMPPPPGGAVPVFGPPRPGMPPPPNPQNQQQNQQQ
          G+P    P  PQFAQRPMGPPPTGQVMRGPPPPPRPGMPAPPPRPGMPPPPGGAVPV+GPPRPGMPPPPNPQNQQQNQQQ
Subjt:  DQGSPATTIPSSPQFAQRPMGPPPTGQVMRGPPPPPRPGMPAPPPRPGMPPPPGGAVPVFGPPRPGMPPPPNPQNQQQNQQQ

XP_004134546.1 small nuclear ribonucleoprotein-associated protein B' [Cucumis sativus]5.2e-11584.15Show/hide
Query:  MSMSKSSKMLQYINYRMRVTIQDGRQLVGKFMAFDRHMNLVLGDCEEFRKLPPAKGKKTNEERDERRTLGLVLLRGEEVISMTVEGPPPAEESRAKAVNA
        MSMSKSSKMLQYINYRMRVTIQDGRQLVGKFMAFDRHMNLVLGDCEEFRKLPPAKGKKTNEERDERRTLGLVLLRGEEVISMTVEGPPPAEESRAKAVNA
Subjt:  MSMSKSSKMLQYINYRMRVTIQDGRQLVGKFMAFDRHMNLVLGDCEEFRKLPPAKGKKTNEERDERRTLGLVLLRGEEVISMTVEGPPPAEESRAKAVNA

Query:  AAMAGPGIGRASGRGIPTAPLVQAQPGLAGPVRGVGGPAPGMMQPQISRPPVPQLSAPPMTYPPA-----PGEVCRL---------RCL------HRNSQ
        AAMAGPGIGRA+GRGIPTAPLVQAQPGLAGPVRGVGGPAPGMMQPQISRPPVPQLSAPPMTYP A     PG++            R +       + S 
Subjt:  AAMAGPGIGRASGRGIPTAPLVQAQPGLAGPVRGVGGPAPGMMQPQISRPPVPQLSAPPMTYPPA-----PGEVCRL---------RCL------HRNSQ

Query:  QLDQGSPATTIPSSPQFAQRPMGPPPTGQVMRGPPPPPRPGMPAPPPRPGMPPPPGGAVPVFGPPRPGMPPPPNPQNQQQNQQQ
            G+P    P  PQFAQRPMGPPPTGQVMRGPPPPPRPGMPAPPPRPGMPPPPGGAVPV+GPPRPGMPPPPNPQNQQQNQQQ
Subjt:  QLDQGSPATTIPSSPQFAQRPMGPPPTGQVMRGPPPPPRPGMPAPPPRPGMPPPPGGAVPVFGPPRPGMPPPPNPQNQQQNQQQ

XP_008439504.1 PREDICTED: small nuclear ribonucleoprotein-associated proteins B and B' [Cucumis melo]4.0e-11584.15Show/hide
Query:  MSMSKSSKMLQYINYRMRVTIQDGRQLVGKFMAFDRHMNLVLGDCEEFRKLPPAKGKKTNEERDERRTLGLVLLRGEEVISMTVEGPPPAEESRAKAVNA
        MSMSKSSKMLQYINYRMRVTIQDGRQLVGKFMAFDRHMNLVLGDCEEFRKLPPAKGKKTNEERDERRTLGLVLLRGEEVISMTVEGPPPAEESRAKAVNA
Subjt:  MSMSKSSKMLQYINYRMRVTIQDGRQLVGKFMAFDRHMNLVLGDCEEFRKLPPAKGKKTNEERDERRTLGLVLLRGEEVISMTVEGPPPAEESRAKAVNA

Query:  AAMAGPGIGRASGRGIPTAPLVQAQPGLAGPVRGVGGPAPGMMQPQISRPPVPQLSAPPMTYPPA-----PGEVCRL---------RCL------HRNSQ
        AAMAGPGIGRA+GRGIPTAPLVQAQPGLAGPVRGVGGPAPGMMQPQISRPPVPQLSAPPMTYP A     PG++            R +       + S 
Subjt:  AAMAGPGIGRASGRGIPTAPLVQAQPGLAGPVRGVGGPAPGMMQPQISRPPVPQLSAPPMTYPPA-----PGEVCRL---------RCL------HRNSQ

Query:  QLDQGSPATTIPSSPQFAQRPMGPPPTGQVMRGPPPPPRPGMPAPPPRPGMPPPPGGAVPVFGPPRPGMPPPPNPQNQQQNQQQ
            G+P    P  PQFAQRPMGPPPTGQVMRGPPPPPRPGMPAPPPRPGMPPPPGGAVPV+GPPRPGMPPPPNPQNQQQNQQQ
Subjt:  QLDQGSPATTIPSSPQFAQRPMGPPPTGQVMRGPPPPPRPGMPAPPPRPGMPPPPGGAVPVFGPPRPGMPPPPNPQNQQQNQQQ

XP_022926621.1 small nuclear ribonucleoprotein-associated protein B'-like [Cucurbita moschata]4.4e-11483.93Show/hide
Query:  MSMSKSSKMLQYINYRMRVTIQDGRQLVGKFMAFDRHMNLVLGDCEEFRKLPPAKGKKTNEERDERRTLGLVLLRGEEVISMTVEGPPPAEESRAKAVNA
        MSMSKSSKMLQY+NYRMRVTIQDGRQLVGKFMAFDRHMNLVLGDCEEFRKLPPAKGKKTNEERDERRTLGLVLLRGEEVISMTVEGPPPAEESRAKAVNA
Subjt:  MSMSKSSKMLQYINYRMRVTIQDGRQLVGKFMAFDRHMNLVLGDCEEFRKLPPAKGKKTNEERDERRTLGLVLLRGEEVISMTVEGPPPAEESRAKAVNA

Query:  AAMAGPGIGRASGRGIPTAPLVQAQPGLAGPVRGVGGPAPGMMQPQISRPPVPQLSAPPMTYPPA----------------PGEVCRLRCLHRNSQQLDQ
        AAMAGPGIGRA+GRGIPTAPLVQAQPGLAGPVRGVGGPAPGMMQPQISRPPVPQLSAPPM+YP A                P  V R     + S     
Subjt:  AAMAGPGIGRASGRGIPTAPLVQAQPGLAGPVRGVGGPAPGMMQPQISRPPVPQLSAPPMTYPPA----------------PGEVCRLRCLHRNSQQLDQ

Query:  GSPATTIPSSPQFAQRPMGPPPTGQVMRGPPPPPRPGMPAPPPRPGMPPPPGGAVPVFGPPRPGMPPPPNPQNQQQNQQQ
        G+P    P  PQFAQRPMGPPPTGQVMRGPPPPPRPGM  PPPRPGMPPPPGGAVPV+GPPRPGMPPPPNPQNQQQNQQQ
Subjt:  GSPATTIPSSPQFAQRPMGPPPTGQVMRGPPPPPRPGMPAPPPRPGMPPPPGGAVPVFGPPRPGMPPPPNPQNQQQNQQQ

XP_038882444.1 small nuclear ribonucleoprotein-associated protein B'-like [Benincasa hispida]6.8e-11584.15Show/hide
Query:  MSMSKSSKMLQYINYRMRVTIQDGRQLVGKFMAFDRHMNLVLGDCEEFRKLPPAKGKKTNEERDERRTLGLVLLRGEEVISMTVEGPPPAEESRAKAVNA
        MSMSKSSKMLQYINYRMRVTIQDGRQLVGKFMAFDRHMNLVLGDCEEFRKLPPAKGKKTNEERDERRTLGLVLLRGEEVISMTVEGPPPAEESRAKAVNA
Subjt:  MSMSKSSKMLQYINYRMRVTIQDGRQLVGKFMAFDRHMNLVLGDCEEFRKLPPAKGKKTNEERDERRTLGLVLLRGEEVISMTVEGPPPAEESRAKAVNA

Query:  AAMAGPGIGRASGRGIPTAPLVQAQPGLAGPVRGVGGPAPGMMQPQISRPPVPQLSAPPMTYPPA-----PGEVCRL---------RCL------HRNSQ
        AAMAGPGIGRA+GRGIPTAPLVQAQPGLAGPVRGVGGPAPGMMQPQISRPPVPQLSAPPMTYP A     PG++            R +       + S 
Subjt:  AAMAGPGIGRASGRGIPTAPLVQAQPGLAGPVRGVGGPAPGMMQPQISRPPVPQLSAPPMTYPPA-----PGEVCRL---------RCL------HRNSQ

Query:  QLDQGSPATTIPSSPQFAQRPMGPPPTGQVMRGPPPPPRPGMPAPPPRPGMPPPPGGAVPVFGPPRPGMPPPPNPQNQQQNQQQ
            G+P    P  PQFAQRPMGPPPTGQVMRGPPPPPRPGMPAPPPRPGMPPPPGGAVPV+GPPRPGMPPPPNPQNQQQNQQQ
Subjt:  QLDQGSPATTIPSSPQFAQRPMGPPPTGQVMRGPPPPPRPGMPAPPPRPGMPPPPGGAVPVFGPPRPGMPPPPNPQNQQQNQQQ

TrEMBL top hitse value%identityAlignment
A0A0A0KPA9 Small nuclear ribonucleoprotein-associated protein2.5e-11584.15Show/hide
Query:  MSMSKSSKMLQYINYRMRVTIQDGRQLVGKFMAFDRHMNLVLGDCEEFRKLPPAKGKKTNEERDERRTLGLVLLRGEEVISMTVEGPPPAEESRAKAVNA
        MSMSKSSKMLQYINYRMRVTIQDGRQLVGKFMAFDRHMNLVLGDCEEFRKLPPAKGKKTNEERDERRTLGLVLLRGEEVISMTVEGPPPAEESRAKAVNA
Subjt:  MSMSKSSKMLQYINYRMRVTIQDGRQLVGKFMAFDRHMNLVLGDCEEFRKLPPAKGKKTNEERDERRTLGLVLLRGEEVISMTVEGPPPAEESRAKAVNA

Query:  AAMAGPGIGRASGRGIPTAPLVQAQPGLAGPVRGVGGPAPGMMQPQISRPPVPQLSAPPMTYPPA-----PGEVCRL---------RCL------HRNSQ
        AAMAGPGIGRA+GRGIPTAPLVQAQPGLAGPVRGVGGPAPGMMQPQISRPPVPQLSAPPMTYP A     PG++            R +       + S 
Subjt:  AAMAGPGIGRASGRGIPTAPLVQAQPGLAGPVRGVGGPAPGMMQPQISRPPVPQLSAPPMTYPPA-----PGEVCRL---------RCL------HRNSQ

Query:  QLDQGSPATTIPSSPQFAQRPMGPPPTGQVMRGPPPPPRPGMPAPPPRPGMPPPPGGAVPVFGPPRPGMPPPPNPQNQQQNQQQ
            G+P    P  PQFAQRPMGPPPTGQVMRGPPPPPRPGMPAPPPRPGMPPPPGGAVPV+GPPRPGMPPPPNPQNQQQNQQQ
Subjt:  QLDQGSPATTIPSSPQFAQRPMGPPPTGQVMRGPPPPPRPGMPAPPPRPGMPPPPGGAVPVFGPPRPGMPPPPNPQNQQQNQQQ

A0A1S3AZK2 Small nuclear ribonucleoprotein-associated protein1.9e-11584.15Show/hide
Query:  MSMSKSSKMLQYINYRMRVTIQDGRQLVGKFMAFDRHMNLVLGDCEEFRKLPPAKGKKTNEERDERRTLGLVLLRGEEVISMTVEGPPPAEESRAKAVNA
        MSMSKSSKMLQYINYRMRVTIQDGRQLVGKFMAFDRHMNLVLGDCEEFRKLPPAKGKKTNEERDERRTLGLVLLRGEEVISMTVEGPPPAEESRAKAVNA
Subjt:  MSMSKSSKMLQYINYRMRVTIQDGRQLVGKFMAFDRHMNLVLGDCEEFRKLPPAKGKKTNEERDERRTLGLVLLRGEEVISMTVEGPPPAEESRAKAVNA

Query:  AAMAGPGIGRASGRGIPTAPLVQAQPGLAGPVRGVGGPAPGMMQPQISRPPVPQLSAPPMTYPPA-----PGEVCRL---------RCL------HRNSQ
        AAMAGPGIGRA+GRGIPTAPLVQAQPGLAGPVRGVGGPAPGMMQPQISRPPVPQLSAPPMTYP A     PG++            R +       + S 
Subjt:  AAMAGPGIGRASGRGIPTAPLVQAQPGLAGPVRGVGGPAPGMMQPQISRPPVPQLSAPPMTYPPA-----PGEVCRL---------RCL------HRNSQ

Query:  QLDQGSPATTIPSSPQFAQRPMGPPPTGQVMRGPPPPPRPGMPAPPPRPGMPPPPGGAVPVFGPPRPGMPPPPNPQNQQQNQQQ
            G+P    P  PQFAQRPMGPPPTGQVMRGPPPPPRPGMPAPPPRPGMPPPPGGAVPV+GPPRPGMPPPPNPQNQQQNQQQ
Subjt:  QLDQGSPATTIPSSPQFAQRPMGPPPTGQVMRGPPPPPRPGMPAPPPRPGMPPPPGGAVPVFGPPRPGMPPPPNPQNQQQNQQQ

A0A5A7UAP6 Small nuclear ribonucleoprotein-associated protein1.6e-11484.04Show/hide
Query:  MSKSSKMLQYINYRMRVTIQDGRQLVGKFMAFDRHMNLVLGDCEEFRKLPPAKGKKTNEERDERRTLGLVLLRGEEVISMTVEGPPPAEESRAKAVNAAA
        MSKSSKMLQYINYRMRVTIQDGRQLVGKFMAFDRHMNLVLGDCEEFRKLPPAKGKKTNEERDERRTLGLVLLRGEEVISMTVEGPPPAEESRAKAVNAAA
Subjt:  MSKSSKMLQYINYRMRVTIQDGRQLVGKFMAFDRHMNLVLGDCEEFRKLPPAKGKKTNEERDERRTLGLVLLRGEEVISMTVEGPPPAEESRAKAVNAAA

Query:  MAGPGIGRASGRGIPTAPLVQAQPGLAGPVRGVGGPAPGMMQPQISRPPVPQLSAPPMTYPPA-----PGEVCRL---------RCL------HRNSQQL
        MAGPGIGRA+GRGIPTAPLVQAQPGLAGPVRGVGGPAPGMMQPQISRPPVPQLSAPPMTYP A     PG++            R +       + S   
Subjt:  MAGPGIGRASGRGIPTAPLVQAQPGLAGPVRGVGGPAPGMMQPQISRPPVPQLSAPPMTYPPA-----PGEVCRL---------RCL------HRNSQQL

Query:  DQGSPATTIPSSPQFAQRPMGPPPTGQVMRGPPPPPRPGMPAPPPRPGMPPPPGGAVPVFGPPRPGMPPPPNPQNQQQNQQQ
          G+P    P  PQFAQRPMGPPPTGQVMRGPPPPPRPGMPAPPPRPGMPPPPGGAVPV+GPPRPGMPPPPNPQNQQQNQQQ
Subjt:  DQGSPATTIPSSPQFAQRPMGPPPTGQVMRGPPPPPRPGMPAPPPRPGMPPPPGGAVPVFGPPRPGMPPPPNPQNQQQNQQQ

A0A6J1EFE7 Small nuclear ribonucleoprotein-associated protein2.1e-11483.93Show/hide
Query:  MSMSKSSKMLQYINYRMRVTIQDGRQLVGKFMAFDRHMNLVLGDCEEFRKLPPAKGKKTNEERDERRTLGLVLLRGEEVISMTVEGPPPAEESRAKAVNA
        MSMSKSSKMLQY+NYRMRVTIQDGRQLVGKFMAFDRHMNLVLGDCEEFRKLPPAKGKKTNEERDERRTLGLVLLRGEEVISMTVEGPPPAEESRAKAVNA
Subjt:  MSMSKSSKMLQYINYRMRVTIQDGRQLVGKFMAFDRHMNLVLGDCEEFRKLPPAKGKKTNEERDERRTLGLVLLRGEEVISMTVEGPPPAEESRAKAVNA

Query:  AAMAGPGIGRASGRGIPTAPLVQAQPGLAGPVRGVGGPAPGMMQPQISRPPVPQLSAPPMTYPPA----------------PGEVCRLRCLHRNSQQLDQ
        AAMAGPGIGRA+GRGIPTAPLVQAQPGLAGPVRGVGGPAPGMMQPQISRPPVPQLSAPPM+YP A                P  V R     + S     
Subjt:  AAMAGPGIGRASGRGIPTAPLVQAQPGLAGPVRGVGGPAPGMMQPQISRPPVPQLSAPPMTYPPA----------------PGEVCRLRCLHRNSQQLDQ

Query:  GSPATTIPSSPQFAQRPMGPPPTGQVMRGPPPPPRPGMPAPPPRPGMPPPPGGAVPVFGPPRPGMPPPPNPQNQQQNQQQ
        G+P    P  PQFAQRPMGPPPTGQVMRGPPPPPRPGM  PPPRPGMPPPPGGAVPV+GPPRPGMPPPPNPQNQQQNQQQ
Subjt:  GSPATTIPSSPQFAQRPMGPPPTGQVMRGPPPPPRPGMPAPPPRPGMPPPPGGAVPVFGPPRPGMPPPPNPQNQQQNQQQ

A0A6J1EJ14 Small nuclear ribonucleoprotein-associated protein3.6e-11483.45Show/hide
Query:  MSMSKSSKMLQYINYRMRVTIQDGRQLVGKFMAFDRHMNLVLGDCEEFRKLPPAKGKKTNEERDERRTLGLVLLRGEEVISMTVEGPPPAEESRAKAVNA
        MSMSKSSKMLQYINYRMRVTIQDGRQLVGKFMAFDRHMNLVLGDCEEFRKLPPAKGKKTNEERDERRTLGLVLLRGEEVISMTVEGPPPAEESRAKAVNA
Subjt:  MSMSKSSKMLQYINYRMRVTIQDGRQLVGKFMAFDRHMNLVLGDCEEFRKLPPAKGKKTNEERDERRTLGLVLLRGEEVISMTVEGPPPAEESRAKAVNA

Query:  AAMAGPGIGRASGRGIPTAPLVQAQPGLAGPVRGVGGPAPGMMQPQISRPPVPQLSAPPMTYPPA-----PGEVCRL---------RCL------HRNSQ
        AAMAGPGIGRA+GRGIPTAPLVQAQPGLAGPVRGVGGPAPGMMQPQISRPPVPQLSAPPMTYP A     PG++            R +       + S 
Subjt:  AAMAGPGIGRASGRGIPTAPLVQAQPGLAGPVRGVGGPAPGMMQPQISRPPVPQLSAPPMTYPPA-----PGEVCRL---------RCL------HRNSQ

Query:  QLDQGSPATTIPSSPQFAQRPMGPPPTGQVMRGPPPPPRPGMPAPPPRPGMPPPPGGAVPVFGPPRPGMPPPPNPQNQQQNQQQ
            G+P    P  PQFAQRPMGPPPTGQVMRGPPPPPRPGMPAPPPRPGMPPPPGGAVP++GPPRPGMPPPP PQNQQQNQQQ
Subjt:  QLDQGSPATTIPSSPQFAQRPMGPPPTGQVMRGPPPPPRPGMPAPPPRPGMPPPPGGAVPVFGPPRPGMPPPPNPQNQQQNQQQ

SwissProt top hitse value%identityAlignment
P14678 Small nuclear ribonucleoprotein-associated proteins B and B'6.1e-4248.09Show/hide
Query:  MSMSKSSKMLQYINYRMRVTIQDGRQLVGKFMAFDRHMNLVLGDCEEFRKLPPAKGKKTNEERDERRTLGLVLLRGEEVISMTVEGPPPAEESRAKAVNA
        M++ KSSKMLQ+I+YRMR  +QDGR  +G F AFD+HMNL+L DC+EFRK+ P   K+   ER+E+R LGLVLLRGE ++SMTVEGPPP +   A+   A
Subjt:  MSMSKSSKMLQYINYRMRVTIQDGRQLVGKFMAFDRHMNLVLGDCEEFRKLPPAKGKKTNEERDERRTLGLVLLRGEEVISMTVEGPPPAEESRAKAVNA

Query:  AAMAGPGIGRASGRGIPT-APLVQAQPGLAGPVRGVGGPAPGMMQPQ-------ISRPPVPQLSAPPMTYPPAPGEVCRLRCLHRNSQQLDQGSPATTIP
         A  GPGIGRA+GRGIP   P+ QA  GLAGPVRGVGGP+  +M PQ        +      ++  P  YPP  G                 G P     
Subjt:  AAMAGPGIGRASGRGIPT-APLVQAQPGLAGPVRGVGGPAPGMMQPQ-------ISRPPVPQLSAPPMTYPPAPGEVCRLRCLHRNSQQLDQGSPATTIP

Query:  SSPQFAQRPMGPPPTGQVMRGPPP--PPRPGMPAPPPRPGMPPPPGGAVPVFGPPRPGMPPP
         +P      MGPPP  +   GPP   PP  G P   P PGM PPP G   + GPP PGM PP
Subjt:  SSPQFAQRPMGPPPTGQVMRGPPP--PPRPGMPAPPPRPGMPPPPGGAVPVFGPPRPGMPPP

Q58DW4 Small nuclear ribonucleoprotein-associated protein B'3.0e-4147.71Show/hide
Query:  MSMSKSSKMLQYINYRMRVTIQDGRQLVGKFMAFDRHMNLVLGDCEEFRKLPPAKGKKTNEERDERRTLGLVLLRGEEVISMTVEGPPPAEESRAKAVNA
        M++ KSSKMLQ+I+YRMR  +QDGR  +G F AFD+HMNL+L DC+EFRK+ P   K+   ER+E+R LGLVLLRGE ++SMTVEGPPP +   A+   A
Subjt:  MSMSKSSKMLQYINYRMRVTIQDGRQLVGKFMAFDRHMNLVLGDCEEFRKLPPAKGKKTNEERDERRTLGLVLLRGEEVISMTVEGPPPAEESRAKAVNA

Query:  AAMAGPGIGRASGRGIPT-APLVQAQPGLAGPVRGVGGPAPGMMQPQ-------ISRPPVPQLSAPPMTYPPAPGEVCRLRCLHRNSQQLDQGSPATTIP
         A  GPGIGRA+GRGIP   P+ QA  GLAGPVRGVGGP+  +M PQ        +      ++  P  YPP                    G P     
Subjt:  AAMAGPGIGRASGRGIPT-APLVQAQPGLAGPVRGVGGPAPGMMQPQ-------ISRPPVPQLSAPPMTYPPAPGEVCRLRCLHRNSQQLDQGSPATTIP

Query:  SSPQFAQRPMGPPPTGQVMRGPPP--PPRPGMPAPPPRPGMPPPPGGAVPVFGPPRPGMPPP
         +P      MGPPP  +   GPP   PP  G P   P PGM PPP G   + GPP PGM PP
Subjt:  SSPQFAQRPMGPPPTGQVMRGPPP--PPRPGMPAPPPRPGMPPPPGGAVPVFGPPRPGMPPP

Q9N1Q0 Small nuclear ribonucleoprotein-associated protein B'2.7e-4246.92Show/hide
Query:  MSMSKSSKMLQYINYRMRVTIQDGRQLVGKFMAFDRHMNLVLGDCEEFRKLPPAKGKKTNEERDERRTLGLVLLRGEEVISMTVEGPPPAEESRAKAVNA
        M++ KSSKMLQ+I+YRMR  +QDGR  +G F AFD+HMNL+L DC+EFRK+ P   K+   ER+E+R LGLVLLRGE ++SMTVEGPPP +   A+   +
Subjt:  MSMSKSSKMLQYINYRMRVTIQDGRQLVGKFMAFDRHMNLVLGDCEEFRKLPPAKGKKTNEERDERRTLGLVLLRGEEVISMTVEGPPPAEESRAKAVNA

Query:  AAMAGPGIGRASGRGIPT-APLVQAQPGLAGPVRGVGGPAPGMMQPQ-------ISRPPVPQLSAPPMTYPPAPGEVCRLRCLHRNSQQLDQGSPATTIP
         A  GPGIGRA+GRG+P   P+ QA  GLAGPVRGVGGP+  +M PQ        +      ++  P  +PP  G              + +G P   + 
Subjt:  AAMAGPGIGRASGRGIPT-APLVQAQPGLAGPVRGVGGPAPGMMQPQ-------ISRPPVPQLSAPPMTYPPAPGEVCRLRCLHRNSQQLDQGSPATTIP

Query:  SSPQFAQRPMGPPPTGQVMRGPPPPPRPGMPAPPPRPGMPPPPGGAVPVFGPPRPGMPPP
        + P   + PMG PPTG        PP  G P   P PGM PPP G   + GPP PGM PP
Subjt:  SSPQFAQRPMGPPPTGQVMRGPPPPPRPGMPAPPPRPGMPPPPGGAVPVFGPPRPGMPPP

Q9PV94 Small nuclear ribonucleoprotein-associated protein B'4.0e-4148.26Show/hide
Query:  MSMSKSSKMLQYINYRMRVTIQDGRQLVGKFMAFDRHMNLVLGDCEEFRKLPPAKGKKTNEERDERRTLGLVLLRGEEVISMTVEGPPPAEESRAKAVNA
        M++ KSSKMLQ+I+YRMR  +QDGR  +G F AFD+HMNL+L DC+EFRK+ P   K+   ER+E+R LGLVLLRGE ++SMTVEGPPP +   A+   A
Subjt:  MSMSKSSKMLQYINYRMRVTIQDGRQLVGKFMAFDRHMNLVLGDCEEFRKLPPAKGKKTNEERDERRTLGLVLLRGEEVISMTVEGPPPAEESRAKAVNA

Query:  AAMAGPGIGRASGRGIPT-APLVQAQPGLAGPVRGVGGPAPGMMQPQISRPPVPQLSAPPMTYPPAPGEVCRLRCLHRNSQQLDQGSPATTIPSSPQFAQ
         A  GPG+GRA+GRG+P  AP+ QA  GLAGPVRGVGGP+  +M PQ         +A   +   AP                 Q +P    P  P    
Subjt:  AAMAGPGIGRASGRGIPT-APLVQAQPGLAGPVRGVGGPAPGMMQPQISRPPVPQLSAPPMTYPPAPGEVCRLRCLHRNSQQLDQGSPATTIPSSPQFAQ

Query:  RP----MGPPPTGQVMRGPP--PPPRPGMPAPPPRPGMPPPPGGAVPVFGPPRPGMPPP
         P    MGPPP  +   GPP   PP  G P   P PGM PPP G   + GPP PGM PP
Subjt:  RP----MGPPPTGQVMRGPP--PPPRPGMPAPPPRPGMPPPPGGAVPVFGPPRPGMPPP

Q9TU67 Small nuclear ribonucleoprotein-associated protein B'1.4e-4147.71Show/hide
Query:  MSMSKSSKMLQYINYRMRVTIQDGRQLVGKFMAFDRHMNLVLGDCEEFRKLPPAKGKKTNEERDERRTLGLVLLRGEEVISMTVEGPPPAEESRAKAVNA
        M++ KSSKMLQ+I+YRMR  +QDGR  +G F AFD+HMNL+L DC+EFRK+ P   K+   ER+E+R LGLVLLRGE ++SMTVEGPPP +   A+   A
Subjt:  MSMSKSSKMLQYINYRMRVTIQDGRQLVGKFMAFDRHMNLVLGDCEEFRKLPPAKGKKTNEERDERRTLGLVLLRGEEVISMTVEGPPPAEESRAKAVNA

Query:  AAMAGPGIGRASGRGIPT-APLVQAQPGLAGPVRGVGGPAPGMMQPQ-------ISRPPVPQLSAPPMTYPPAPGEVCRLRCLHRNSQQLDQGSPATTIP
         A  GPGIGRA+GRGIP   P+ QA  GLAGPVRGVGGP+  +M PQ        +      ++  P  YPP  G                 G P     
Subjt:  AAMAGPGIGRASGRGIPT-APLVQAQPGLAGPVRGVGGPAPGMMQPQ-------ISRPPVPQLSAPPMTYPPAPGEVCRLRCLHRNSQQLDQGSPATTIP

Query:  SSPQFAQRPMGPPPTGQVMRGPPP--PPRPGMPAPPPRPGMPPPPGGAVPVFGPPRPGMPPP
         +P      MGPPP  +   GPP   PP  G P   P PGM PPP G   + GPP PG+ PP
Subjt:  SSPQFAQRPMGPPPTGQVMRGPPP--PPRPGMPAPPPRPGMPPPPGGAVPVFGPPRPGMPPP

Arabidopsis top hitse value%identityAlignment
AT4G20440.1 small nuclear ribonucleoprotein associated protein B3.4e-8871.85Show/hide
Query:  MSMSKSSKMLQYINYRMRVTIQDGRQLVGKFMAFDRHMNLVLGDCEEFRKLPPAKGKKTNEERDERRTLGLVLLRGEEVISMTVEGPPPAEESRAKAVNA
        MSMSKSSKMLQ+INYRMRVTIQDGRQLVGKFMAFDRHMNLVLGDCEEFRKLPPAKGKK NEER++RRTLGLVLLRGEEVISMTVEGPPP EESRAKA +A
Subjt:  MSMSKSSKMLQYINYRMRVTIQDGRQLVGKFMAFDRHMNLVLGDCEEFRKLPPAKGKKTNEERDERRTLGLVLLRGEEVISMTVEGPPPAEESRAKAVNA

Query:  AAMAGPGIGRASGRGIPTAPLVQAQPGLAGPVRGVGGPAPGMMQPQISRPPVPQLSAPPMTYPPAPGEVCRLRCLHRNSQQLDQGSPAT----------T
        AA+AGPGIGRA+GRG+PT PLVQAQPGL+GPVRGVGGPAPGMMQPQISRP  PQLSAPP+  P  PG++            + +G P            +
Subjt:  AAMAGPGIGRASGRGIPTAPLVQAQPGLAGPVRGVGGPAPGMMQPQISRPPVPQLSAPPMTYPPAPGEVCRLRCLHRNSQQLDQGSPAT----------T

Query:  IPSSPQFAQRPMGPPPTGQVMRGPPPPPRPGMPAPPPRPGMPPPPGGAVPVFGPPRPGMPPPPNPQNQQQ
         P  PQ+ QRPM PPP G +MRGPPPPP      PPPRPGMPP PGG    F PPRPGMP    P NQQQ
Subjt:  IPSSPQFAQRPMGPPPTGQVMRGPPPPPRPGMPAPPPRPGMPPPPGGAVPVFGPPRPGMPPPPNPQNQQQ

AT4G20440.2 small nuclear ribonucleoprotein associated protein B3.4e-8871.85Show/hide
Query:  MSMSKSSKMLQYINYRMRVTIQDGRQLVGKFMAFDRHMNLVLGDCEEFRKLPPAKGKKTNEERDERRTLGLVLLRGEEVISMTVEGPPPAEESRAKAVNA
        MSMSKSSKMLQ+INYRMRVTIQDGRQLVGKFMAFDRHMNLVLGDCEEFRKLPPAKGKK NEER++RRTLGLVLLRGEEVISMTVEGPPP EESRAKA +A
Subjt:  MSMSKSSKMLQYINYRMRVTIQDGRQLVGKFMAFDRHMNLVLGDCEEFRKLPPAKGKKTNEERDERRTLGLVLLRGEEVISMTVEGPPPAEESRAKAVNA

Query:  AAMAGPGIGRASGRGIPTAPLVQAQPGLAGPVRGVGGPAPGMMQPQISRPPVPQLSAPPMTYPPAPGEVCRLRCLHRNSQQLDQGSPAT----------T
        AA+AGPGIGRA+GRG+PT PLVQAQPGL+GPVRGVGGPAPGMMQPQISRP  PQLSAPP+  P  PG++            + +G P            +
Subjt:  AAMAGPGIGRASGRGIPTAPLVQAQPGLAGPVRGVGGPAPGMMQPQISRPPVPQLSAPPMTYPPAPGEVCRLRCLHRNSQQLDQGSPAT----------T

Query:  IPSSPQFAQRPMGPPPTGQVMRGPPPPPRPGMPAPPPRPGMPPPPGGAVPVFGPPRPGMPPPPNPQNQQQ
         P  PQ+ QRPM PPP G +MRGPPPPP      PPPRPGMPP PGG    F PPRPGMP    P NQQQ
Subjt:  IPSSPQFAQRPMGPPPTGQVMRGPPPPPRPGMPAPPPRPGMPPPPGGAVPVFGPPRPGMPPPPNPQNQQQ

AT4G20440.3 small nuclear ribonucleoprotein associated protein B3.4e-8871.85Show/hide
Query:  MSMSKSSKMLQYINYRMRVTIQDGRQLVGKFMAFDRHMNLVLGDCEEFRKLPPAKGKKTNEERDERRTLGLVLLRGEEVISMTVEGPPPAEESRAKAVNA
        MSMSKSSKMLQ+INYRMRVTIQDGRQLVGKFMAFDRHMNLVLGDCEEFRKLPPAKGKK NEER++RRTLGLVLLRGEEVISMTVEGPPP EESRAKA +A
Subjt:  MSMSKSSKMLQYINYRMRVTIQDGRQLVGKFMAFDRHMNLVLGDCEEFRKLPPAKGKKTNEERDERRTLGLVLLRGEEVISMTVEGPPPAEESRAKAVNA

Query:  AAMAGPGIGRASGRGIPTAPLVQAQPGLAGPVRGVGGPAPGMMQPQISRPPVPQLSAPPMTYPPAPGEVCRLRCLHRNSQQLDQGSPAT----------T
        AA+AGPGIGRA+GRG+PT PLVQAQPGL+GPVRGVGGPAPGMMQPQISRP  PQLSAPP+  P  PG++            + +G P            +
Subjt:  AAMAGPGIGRASGRGIPTAPLVQAQPGLAGPVRGVGGPAPGMMQPQISRPPVPQLSAPPMTYPPAPGEVCRLRCLHRNSQQLDQGSPAT----------T

Query:  IPSSPQFAQRPMGPPPTGQVMRGPPPPPRPGMPAPPPRPGMPPPPGGAVPVFGPPRPGMPPPPNPQNQQQ
         P  PQ+ QRPM PPP G +MRGPPPPP      PPPRPGMPP PGG    F PPRPGMP    P NQQQ
Subjt:  IPSSPQFAQRPMGPPPTGQVMRGPPPPPRPGMPAPPPRPGMPPPPGGAVPVFGPPRPGMPPPPNPQNQQQ

AT4G20440.4 small nuclear ribonucleoprotein associated protein B3.4e-8871.85Show/hide
Query:  MSMSKSSKMLQYINYRMRVTIQDGRQLVGKFMAFDRHMNLVLGDCEEFRKLPPAKGKKTNEERDERRTLGLVLLRGEEVISMTVEGPPPAEESRAKAVNA
        MSMSKSSKMLQ+INYRMRVTIQDGRQLVGKFMAFDRHMNLVLGDCEEFRKLPPAKGKK NEER++RRTLGLVLLRGEEVISMTVEGPPP EESRAKA +A
Subjt:  MSMSKSSKMLQYINYRMRVTIQDGRQLVGKFMAFDRHMNLVLGDCEEFRKLPPAKGKKTNEERDERRTLGLVLLRGEEVISMTVEGPPPAEESRAKAVNA

Query:  AAMAGPGIGRASGRGIPTAPLVQAQPGLAGPVRGVGGPAPGMMQPQISRPPVPQLSAPPMTYPPAPGEVCRLRCLHRNSQQLDQGSPAT----------T
        AA+AGPGIGRA+GRG+PT PLVQAQPGL+GPVRGVGGPAPGMMQPQISRP  PQLSAPP+  P  PG++            + +G P            +
Subjt:  AAMAGPGIGRASGRGIPTAPLVQAQPGLAGPVRGVGGPAPGMMQPQISRPPVPQLSAPPMTYPPAPGEVCRLRCLHRNSQQLDQGSPAT----------T

Query:  IPSSPQFAQRPMGPPPTGQVMRGPPPPPRPGMPAPPPRPGMPPPPGGAVPVFGPPRPGMPPPPNPQNQQQ
         P  PQ+ QRPM PPP G +MRGPPPPP      PPPRPGMPP PGG    F PPRPGMP    P NQQQ
Subjt:  IPSSPQFAQRPMGPPPTGQVMRGPPPPPRPGMPAPPPRPGMPPPPGGAVPVFGPPRPGMPPPPNPQNQQQ

AT5G44500.1 Small nuclear ribonucleoprotein family protein3.3e-8369.85Show/hide
Query:  MSMSKSSKMLQYINYRMRVTIQDGRQLVGKFMAFDRHMNLVLGDCEEFRKLPPAKG-KKTNEERDERRTLGLVLLRGEEVISMTVEGPPPAEESRAKAVN
        MSMSKSSKMLQ+INYRMRVTIQDGRQL+GKFMAFDRHMNLVLGDCEEFRKLPPAKG KKTNEER+ERRTLGLVLLRGEEVISMTVEGPPP EESRAK+ +
Subjt:  MSMSKSSKMLQYINYRMRVTIQDGRQLVGKFMAFDRHMNLVLGDCEEFRKLPPAKG-KKTNEERDERRTLGLVLLRGEEVISMTVEGPPPAEESRAKAVN

Query:  AAAMAGPGIGRASGRGIPTAPLVQAQPGLAGPVRGVGGPAPGMMQPQISRPPVPQLSAPPMTYPPAPGEVCRLRCLHRNSQQLDQGSPATTI--------
          A+AGPGIGRA+GRG+PT PLVQAQPGL+GPVRG+GGPAPGMMQPQISRP  PQ+  PP   PP P                 QG P            
Subjt:  AAAMAGPGIGRASGRGIPTAPLVQAQPGLAGPVRGVGGPAPGMMQPQISRPPVPQLSAPPMTYPPAPGEVCRLRCLHRNSQQLDQGSPATTI--------

Query:  PSSPQFA--QRPMGPPPTGQVMRGPPPPPRPGMPAPPP-RPGMPPPPGGAVPVFGPPRPGMPP-PPNPQNQQ
        P  PQ+   QRPM  PP G +MRGPPPP   GM  PPP RPGMPPP  G  P+F PP PGMPP PPN  NQQ
Subjt:  PSSPQFA--QRPMGPPPTGQVMRGPPPPPRPGMPAPPP-RPGMPPPPGGAVPVFGPPRPGMPP-PPNPQNQQ


Sequences Show/hide sequences
CDS sequenceShow/hide CDS sequence
ATGTCGATGTCTAAGAGTTCAAAGATGCTTCAGTATATTAATTACCGGATGAGGGTCACGATCCAAGATGGTCGCCAATTGGTTGGCAAGTTCATGGCCTTCGATCGGCA
CATGAACCTTGTCCTCGGCGACTGCGAGGAGTTTCGTAAGCTTCCGCCGGCTAAGGGTAAAAAGACTAATGAGGAACGTGACGAGCGTCGTACTCTTGGCCTCGTTCTCC
TACGGGGCGAAGAGGTCATTTCCATGACAGTTGAGGGTCCACCGCCTGCTGAAGAGTCCCGTGCTAAGGCCGTAAATGCTGCAGCTATGGCTGGGCCTGGTATCGGCCGT
GCCTCTGGCAGGGGCATCCCGACTGCTCCTCTTGTTCAGGCTCAGCCTGGTCTTGCCGGGCCAGTTCGTGGAGTTGGCGGACCCGCTCCGGGGATGATGCAGCCTCAAAT
CTCTCGCCCGCCAGTACCACAGCTGTCCGCTCCGCCGATGACATATCCGCCTGCCCCTGGAGAGGTATGCCGCCTCCGGTGCCTCCACCGCAATTCTCAGCAGCTAGACC
AGGGGAGCCCCGCCACAACCATTCCCAGTTCCCCCCAGTTTGCGCAGAGACCTATGGGACCACCACCGACCGGGCAGGTGATGAGGGGACCGCCACCTCCACCCAGGCCT
GGAATGCCAGCTCCGCCGCCTCGACCTGGGATGCCTCCTCCTCCCGGTGGCGCAGTTCCTGTTTTCGGACCACCTCGCCCTGGCATGCCGCCTCCACCCAACCCACAAAA
TCAGCAGCAAAATCAACAGCAATAG
mRNA sequenceShow/hide mRNA sequence
ATGTCGATGTCTAAGAGTTCAAAGATGCTTCAGTATATTAATTACCGGATGAGGGTCACGATCCAAGATGGTCGCCAATTGGTTGGCAAGTTCATGGCCTTCGATCGGCA
CATGAACCTTGTCCTCGGCGACTGCGAGGAGTTTCGTAAGCTTCCGCCGGCTAAGGGTAAAAAGACTAATGAGGAACGTGACGAGCGTCGTACTCTTGGCCTCGTTCTCC
TACGGGGCGAAGAGGTCATTTCCATGACAGTTGAGGGTCCACCGCCTGCTGAAGAGTCCCGTGCTAAGGCCGTAAATGCTGCAGCTATGGCTGGGCCTGGTATCGGCCGT
GCCTCTGGCAGGGGCATCCCGACTGCTCCTCTTGTTCAGGCTCAGCCTGGTCTTGCCGGGCCAGTTCGTGGAGTTGGCGGACCCGCTCCGGGGATGATGCAGCCTCAAAT
CTCTCGCCCGCCAGTACCACAGCTGTCCGCTCCGCCGATGACATATCCGCCTGCCCCTGGAGAGGTATGCCGCCTCCGGTGCCTCCACCGCAATTCTCAGCAGCTAGACC
AGGGGAGCCCCGCCACAACCATTCCCAGTTCCCCCCAGTTTGCGCAGAGACCTATGGGACCACCACCGACCGGGCAGGTGATGAGGGGACCGCCACCTCCACCCAGGCCT
GGAATGCCAGCTCCGCCGCCTCGACCTGGGATGCCTCCTCCTCCCGGTGGCGCAGTTCCTGTTTTCGGACCACCTCGCCCTGGCATGCCGCCTCCACCCAACCCACAAAA
TCAGCAGCAAAATCAACAGCAATAG
Protein sequenceShow/hide protein sequence
MSMSKSSKMLQYINYRMRVTIQDGRQLVGKFMAFDRHMNLVLGDCEEFRKLPPAKGKKTNEERDERRTLGLVLLRGEEVISMTVEGPPPAEESRAKAVNAAAMAGPGIGR
ASGRGIPTAPLVQAQPGLAGPVRGVGGPAPGMMQPQISRPPVPQLSAPPMTYPPAPGEVCRLRCLHRNSQQLDQGSPATTIPSSPQFAQRPMGPPPTGQVMRGPPPPPRP
GMPAPPPRPGMPPPPGGAVPVFGPPRPGMPPPPNPQNQQQNQQQ