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Sgr008701 (gene) of Monk fruit (Qingpiguo) v1 genome

Gene IDSgr008701
OrganismSiraitia grosvenorii cv. Qingpiguo (Monk fruit (Qingpiguo) v1)
Descriptionstructure-specific endonuclease subunit SLX1
Genome locationtig00007125:74161..84849
RNA-Seq ExpressionSgr008701
SyntenySgr008701
Gene Ontology termsGO:0000724 - double-strand break repair via homologous recombination (biological process)
GO:0090305 - nucleic acid phosphodiester bond hydrolysis (biological process)
GO:0033557 - Slx1-Slx4 complex (cellular component)
GO:0008821 - crossover junction endodeoxyribonuclease activity (molecular function)
GO:0017108 - 5'-flap endonuclease activity (molecular function)
InterPro domainsIPR000305 - GIY-YIG endonuclease
IPR035901 - GIY-YIG endonuclease superfamily


Homology Show/hide homology
GenBank top hitse value%identityAlignment
XP_004151512.1 structure-specific endonuclease subunit SLX1 [Cucumis sativus]2.9e-5876.28Show/hide
Query:  MRVLSQTFRCHKRPIANPDVPKPSSSSTEDPVAVTLSVKSKPKP----WCVYLIISSNFPIKTYVGVTLNFARRLKQHNGEIEGGAKATRAGRPWICACT
        MR+LS TFRC K PI+NP + K SSSS++DP   TL VKS+PKP    WCVYLIISSN PIKTYVGVTL+F RRLKQHNGEI+GGAKATRAGRPWICACT
Subjt:  MRVLSQTFRCHKRPIANPDVPKPSSSSTEDPVAVTLSVKSKPKP----WCVYLIISSNFPIKTYVGVTLNFARRLKQHNGEIEGGAKATRAGRPWICACT

Query:  IHGFKDQSQACEFESKWKEVSRKLPHQRKKNDMGKQVDDQTLRLLKHREGALEKVK
        IHGFKDQSQACEFESKWK+VSRK+ +++K+ D+GK +DDQTLRLLKHRE AL KVK
Subjt:  IHGFKDQSQACEFESKWKEVSRKLPHQRKKNDMGKQVDDQTLRLLKHREGALEKVK

XP_008461838.1 PREDICTED: structure-specific endonuclease subunit slx1 [Cucumis melo]2.7e-5975Show/hide
Query:  MRVLSQTFRCHKRPIANPDVPKPSSSSTEDPVAVTLSVKSKPKPWCVYLIISSNFPIKTYVGVTLNFARRLKQHNGEIEGGAKATRAGRPWICACTIHGF
        MR+LSQTFRC K PI+NP +PK SSSST+ P  +    + KPK WCVYLIISSN PIKTYVGVTL+F RRLKQHNGEI+GGAKAT+AGRPWICACTIHGF
Subjt:  MRVLSQTFRCHKRPIANPDVPKPSSSSTEDPVAVTLSVKSKPKPWCVYLIISSNFPIKTYVGVTLNFARRLKQHNGEIEGGAKATRAGRPWICACTIHGF

Query:  KDQSQACEFESKWKEVSRKLPHQRKKNDMGKQVDDQTLRLLKHREGALEKVK
        KDQSQACEFESKWK+VSRK+ +++K++D+GKQ+D+QTLRLLKHR+ AL KVK
Subjt:  KDQSQACEFESKWKEVSRKLPHQRKKNDMGKQVDDQTLRLLKHREGALEKVK

XP_022152567.1 structure-specific endonuclease subunit SLX1 [Momordica charantia]2.0e-5978.06Show/hide
Query:  MRVLSQTFRCHKRPIANPDVPKP-SSSSTEDPVAVTLSVKS--KPKPWCVYLIISSNFPIKTYVGVTLNFARRLKQHNGEIEGGAKATRAGRPWICACTI
        MR+LS TFRCHK PI+N   PKP SSSST+DP A TLS +S  KPKPWCVYLIISSN P KTYVGVTLNF+RRLKQHNGEI+GGAKATRAGRPW+CAC I
Subjt:  MRVLSQTFRCHKRPIANPDVPKP-SSSSTEDPVAVTLSVKS--KPKPWCVYLIISSNFPIKTYVGVTLNFARRLKQHNGEIEGGAKATRAGRPWICACTI

Query:  HGFKDQSQACEFESKWKEVSRKLPHQRKKNDMGKQVDDQTLRLLKHREGALEKVK
        HGFKDQSQACEFESKWKEVSRK+ H+RKK+D  +Q D+Q LRLLK+R+ ALEKVK
Subjt:  HGFKDQSQACEFESKWKEVSRKLPHQRKKNDMGKQVDDQTLRLLKHREGALEKVK

XP_022982643.1 structure-specific endonuclease subunit slx1 isoform X1 [Cucurbita maxima]7.0e-5272.73Show/hide
Query:  MRVLSQTFRCHKRPIANPDVPKPSSSSTEDPVAVTLSVKSKP--KPWCVYLIISSNFPIKTYVGVTLNFARRLKQHNGEIEGGAKATRAGRPWICACTIH
        MR+LSQTFR  K PI++P+V K SSSST+ P   TL++KS+P  K WCVYLIISSN PIKTYVGVTL+F RRLKQHNGEI+GGAKATRAGRPWICAC IH
Subjt:  MRVLSQTFRCHKRPIANPDVPKPSSSSTEDPVAVTLSVKSKP--KPWCVYLIISSNFPIKTYVGVTLNFARRLKQHNGEIEGGAKATRAGRPWICACTIH

Query:  GFKDQSQACEFESKWKEVSRKLPHQRKKNDMGKQVDDQTLRLLKHREGALEKVK
        GFK+QSQACEFESKWKE+ RK+ H RK     ++VDDQTLRLLK R+ AL KVK
Subjt:  GFKDQSQACEFESKWKEVSRKLPHQRKKNDMGKQVDDQTLRLLKHREGALEKVK

XP_038903984.1 structure-specific endonuclease subunit slx1 isoform X1 [Benincasa hispida]1.6e-5674.34Show/hide
Query:  MRVLSQTFRCHKRPIANPDVPKPSSSSTEDPVAVTLSVKSKPKPWCVYLIISSNFPIKTYVGVTLNFARRLKQHNGEIEGGAKATRAGRPWICACTIHGF
        MR+LSQTFR  K   +N  + K SSSST+DP+ +  S + KPK WCVYLIISSN PIKTYVGVTL+F RRLKQHNGEI+GGAKATR GRPW+CACTIHGF
Subjt:  MRVLSQTFRCHKRPIANPDVPKPSSSSTEDPVAVTLSVKSKPKPWCVYLIISSNFPIKTYVGVTLNFARRLKQHNGEIEGGAKATRAGRPWICACTIHGF

Query:  KDQSQACEFESKWKEVSRKLPHQRKKNDMGKQVDDQTLRLLKHREGALEKVK
        KDQ QACEFESKWKEVSRK+ +++K++DMGKQVDDQTLRLLKHR+ AL KVK
Subjt:  KDQSQACEFESKWKEVSRKLPHQRKKNDMGKQVDDQTLRLLKHREGALEKVK

TrEMBL top hitse value%identityAlignment
A0A0A0LCZ9 GIY-YIG domain-containing protein1.4e-5876.28Show/hide
Query:  MRVLSQTFRCHKRPIANPDVPKPSSSSTEDPVAVTLSVKSKPKP----WCVYLIISSNFPIKTYVGVTLNFARRLKQHNGEIEGGAKATRAGRPWICACT
        MR+LS TFRC K PI+NP + K SSSS++DP   TL VKS+PKP    WCVYLIISSN PIKTYVGVTL+F RRLKQHNGEI+GGAKATRAGRPWICACT
Subjt:  MRVLSQTFRCHKRPIANPDVPKPSSSSTEDPVAVTLSVKSKPKP----WCVYLIISSNFPIKTYVGVTLNFARRLKQHNGEIEGGAKATRAGRPWICACT

Query:  IHGFKDQSQACEFESKWKEVSRKLPHQRKKNDMGKQVDDQTLRLLKHREGALEKVK
        IHGFKDQSQACEFESKWK+VSRK+ +++K+ D+GK +DDQTLRLLKHRE AL KVK
Subjt:  IHGFKDQSQACEFESKWKEVSRKLPHQRKKNDMGKQVDDQTLRLLKHREGALEKVK

A0A1S3CFH5 structure-specific endonuclease subunit slx11.3e-5975Show/hide
Query:  MRVLSQTFRCHKRPIANPDVPKPSSSSTEDPVAVTLSVKSKPKPWCVYLIISSNFPIKTYVGVTLNFARRLKQHNGEIEGGAKATRAGRPWICACTIHGF
        MR+LSQTFRC K PI+NP +PK SSSST+ P  +    + KPK WCVYLIISSN PIKTYVGVTL+F RRLKQHNGEI+GGAKAT+AGRPWICACTIHGF
Subjt:  MRVLSQTFRCHKRPIANPDVPKPSSSSTEDPVAVTLSVKSKPKPWCVYLIISSNFPIKTYVGVTLNFARRLKQHNGEIEGGAKATRAGRPWICACTIHGF

Query:  KDQSQACEFESKWKEVSRKLPHQRKKNDMGKQVDDQTLRLLKHREGALEKVK
        KDQSQACEFESKWK+VSRK+ +++K++D+GKQ+D+QTLRLLKHR+ AL KVK
Subjt:  KDQSQACEFESKWKEVSRKLPHQRKKNDMGKQVDDQTLRLLKHREGALEKVK

A0A6J1DGL6 structure-specific endonuclease subunit SLX19.8e-6078.06Show/hide
Query:  MRVLSQTFRCHKRPIANPDVPKP-SSSSTEDPVAVTLSVKS--KPKPWCVYLIISSNFPIKTYVGVTLNFARRLKQHNGEIEGGAKATRAGRPWICACTI
        MR+LS TFRCHK PI+N   PKP SSSST+DP A TLS +S  KPKPWCVYLIISSN P KTYVGVTLNF+RRLKQHNGEI+GGAKATRAGRPW+CAC I
Subjt:  MRVLSQTFRCHKRPIANPDVPKP-SSSSTEDPVAVTLSVKS--KPKPWCVYLIISSNFPIKTYVGVTLNFARRLKQHNGEIEGGAKATRAGRPWICACTI

Query:  HGFKDQSQACEFESKWKEVSRKLPHQRKKNDMGKQVDDQTLRLLKHREGALEKVK
        HGFKDQSQACEFESKWKEVSRK+ H+RKK+D  +Q D+Q LRLLK+R+ ALEKVK
Subjt:  HGFKDQSQACEFESKWKEVSRKLPHQRKKNDMGKQVDDQTLRLLKHREGALEKVK

A0A6J1F1V2 structure-specific endonuclease subunit slx15.8e-5273.38Show/hide
Query:  MRVLSQTFRCHKRPIANPDVPKPSSSSTEDPVAVTLSVKSKPKP--WCVYLIISSNFPIKTYVGVTLNFARRLKQHNGEIEGGAKATRAGRPWICACTIH
        MR+LSQTFR  K PI++P+V K SSSST+ P   TL VKS+P+P  WCVYLIISSN PIKTYVGVTL+F RRLKQHNGEI+GGAKATRAGRPWICAC IH
Subjt:  MRVLSQTFRCHKRPIANPDVPKPSSSSTEDPVAVTLSVKSKPKP--WCVYLIISSNFPIKTYVGVTLNFARRLKQHNGEIEGGAKATRAGRPWICACTIH

Query:  GFKDQSQACEFESKWKEVSRKLPHQRKKNDMGKQVDDQTLRLLKHREGALEKVK
        GFKDQSQACEFESKWKE+ RK+ H RK     ++VDD TLRLLK R+ AL KVK
Subjt:  GFKDQSQACEFESKWKEVSRKLPHQRKKNDMGKQVDDQTLRLLKHREGALEKVK

A0A6J1J5C9 structure-specific endonuclease subunit slx1 isoform X13.4e-5272.73Show/hide
Query:  MRVLSQTFRCHKRPIANPDVPKPSSSSTEDPVAVTLSVKSKP--KPWCVYLIISSNFPIKTYVGVTLNFARRLKQHNGEIEGGAKATRAGRPWICACTIH
        MR+LSQTFR  K PI++P+V K SSSST+ P   TL++KS+P  K WCVYLIISSN PIKTYVGVTL+F RRLKQHNGEI+GGAKATRAGRPWICAC IH
Subjt:  MRVLSQTFRCHKRPIANPDVPKPSSSSTEDPVAVTLSVKSKP--KPWCVYLIISSNFPIKTYVGVTLNFARRLKQHNGEIEGGAKATRAGRPWICACTIH

Query:  GFKDQSQACEFESKWKEVSRKLPHQRKKNDMGKQVDDQTLRLLKHREGALEKVK
        GFK+QSQACEFESKWKE+ RK+ H RK     ++VDDQTLRLLK R+ AL KVK
Subjt:  GFKDQSQACEFESKWKEVSRKLPHQRKKNDMGKQVDDQTLRLLKHREGALEKVK

SwissProt top hitse value%identityAlignment
A4I1H7 Structure-specific endonuclease subunit SLX1 homolog6.9e-1043.9Show/hide
Query:  CVYLIISSNFPIK--TYVGVTLNFARRLKQHNGEIEGGAKAT-RAGRPWICACTIHGFKDQSQACEFESKWKE--VSRKLPH
        CVYL+ S +   +   Y+G T+N  RRL+QHNGE+  GA+ T R GRPW   C + GF D   A +FE  W+    S +L H
Subjt:  CVYLIISSNFPIK--TYVGVTLNFARRLKQHNGEIEGGAKAT-RAGRPWICACTIHGFKDQSQACEFESKWKE--VSRKLPH

B6JY16 Structure-specific endonuclease subunit slx11.6e-1138.95Show/hide
Query:  WCVYLIISSNFPIKT-YVGVTLNFARRLKQHNGEIEGGAKATRAGRPWICACTIHGFKDQSQACEFESKWKEVSRKLPHQRKKNDMGKQVDDQTL
        +C YL++S     ++ Y+G T + ARRL+QHNGEI+GGA  T+  RPW  AC +HGF  +  A +FE  W+          +++     V  QTL
Subjt:  WCVYLIISSNFPIKT-YVGVTLNFARRLKQHNGEIEGGAKATRAGRPWICACTIHGFKDQSQACEFESKWKEVSRKLPHQRKKNDMGKQVDDQTL

B8MDD1 Structure-specific endonuclease subunit slx19.0e-1041.67Show/hide
Query:  SVKSKPKP--WCVYLIISSNFPIKTYVGVTLNFARRLKQHNGEIEGGAKATRAG--RPWICACTIHGFKDQSQACEFESKWKEV
        +V +KP P  +C YL+ S+  P   Y+G T + ARRL+QHNG  +GGAK T     RPW     + GF  ++ A +FE  W+ V
Subjt:  SVKSKPKP--WCVYLIISSNFPIKTYVGVTLNFARRLKQHNGEIEGGAKATRAG--RPWICACTIHGFKDQSQACEFESKWKEV

Q0UAL6 Structure-specific endonuclease subunit SLX12.6e-0943.37Show/hide
Query:  LSVKSKPKP--WCVYLIISSNFPIKTYVGVTLNFARRLKQHNGEIEGGAKAT--RAGRPWICACTIHGFKDQSQACEFESKWK
        L ++S+P P  +C YL+ S N     Y+G T N ARRL QHNG  +GGAK T  +  RPW   C + GF  +  A +FE  W+
Subjt:  LSVKSKPKP--WCVYLIISSNFPIKTYVGVTLNFARRLKQHNGEIEGGAKAT--RAGRPWICACTIHGFKDQSQACEFESKWK

Q9P7M3 Structure-specific endonuclease subunit slx11.8e-1041.89Show/hide
Query:  WCVYLIISSNFPIK--TYVGVTLNFARRLKQHNGEIEGGAKATRAGRPWICACTIHGFKDQSQACEFESKWKEV
        +C YL+ S+        Y+G T +  RRL+QHNGEI GGA  T+ GRPW  +C ++GF ++  A +FE  W+ +
Subjt:  WCVYLIISSNFPIK--TYVGVTLNFARRLKQHNGEIEGGAKATRAGRPWICACTIHGFKDQSQACEFESKWKEV

Arabidopsis top hitse value%identityAlignment
AT2G30350.2 Excinuclease ABC, C subunit, N-terminal6.0e-0945.61Show/hide
Query:  KTYVGVTLNFARRLKQHNGEIEGGAKATRAGRPWICACTIHGFKDQSQACEFESKWK
        +TY+G T+N  RR++QHNGEI  GA  T+  RPW     I+GF     A +FE  W+
Subjt:  KTYVGVTLNFARRLKQHNGEIEGGAKATRAGRPWICACTIHGFKDQSQACEFESKWK

AT5G43210.1 Excinuclease ABC, C subunit, N-terminal3.1e-3450.94Show/hide
Query:  RVLSQTFRCHKRPIANPDVPK---PSSSSTEDPVAVTLSVKS-----KPKPWCVYLIISSNFPIKTYVGVTLNFARRLKQHNGEIEGGAKATRAGRPWIC
        R+LS+TF   K   +NP  P+     +S T+ P+  + S +      K K W VYLI+S+  PIKTYVG+T +F+RRLKQHNGEI GGAKA+ AGRPW+C
Subjt:  RVLSQTFRCHKRPIANPDVPK---PSSSSTEDPVAVTLSVKS-----KPKPWCVYLIISSNFPIKTYVGVTLNFARRLKQHNGEIEGGAKATRAGRPWIC

Query:  ACTIHGFKDQSQACEFESKWKEVSRKLPHQRKKNDMGKQVDDQTLRLLKHREGALEKVK
        AC I GF   SQA  FESKWK  +RKLP ++K  DM      Q+  LL+HR  AL KV+
Subjt:  ACTIHGFKDQSQACEFESKWKEVSRKLPHQRKKNDMGKQVDDQTLRLLKHREGALEKVK


Sequences Show/hide sequences
CDS sequenceShow/hide CDS sequence
ATGAGAGTGCTTTCTCAGACATTTCGTTGCCATAAACGCCCAATTGCAAATCCAGACGTTCCGAAACCTTCTTCTTCGTCAACCGAGGATCCAGTTGCTGTGACATTGAG
CGTCAAATCGAAGCCGAAGCCGTGGTGTGTGTATCTCATCATCTCCTCCAATTTCCCCATCAAAACCTATGTTGGGGTCACCCTCAACTTCGCTCGCCGTTTGAAACAAC
ATAATGGTGAAATAGAAGGAGGTGCAAAAGCAACTCGTGCAGGACGACCCTGGATCTGTGCGTGCACAATTCATGGTTTTAAAGACCAAAGTCAAGCTTGTGAGTTTGAA
TCAAAATGGAAAGAAGTTTCAAGGAAATTGCCCCATCAGAGGAAGAAGAATGATATGGGAAAGCAGGTGGATGATCAGACATTAAGATTGCTCAAGCACAGGGAAGGAGC
TCTGGAAAAAGTGAAGTCACCAGTCACACTCTTCACGTACGCGCCTAGAGCCGCGTACTCCTCAAACATTCTTACGTCCGCTTTGAACCTCAGAAACTGTGGAAAAAACA
GCCAAAAGCTGGTGATCATCACGAACCCGATCGTCAACGGCGTCGATATTATCGGCGGCAGCCGGAACCTACCTCCGACCGCCCTCTTCACCACCATCTCCGCCGGCAAA
CACAGCCCATGCCGGAGACGACAAACGTTGCCGCCACCGCCACCAGGGACGCCCGTTTTTTCCCCACGACGGCTGCCGCCAAGCTCCGGGATGGCTCGTAGACGGTCAGC
CGGAGGATTTTGGTGGCCATCAGGTTCCATCTCCGGCCCCAGAAGTCCTGTAATGAAGTGGATAGGTAGGGCTCGTCGAAGTAGGGCTGAAGCTCCACCTCAAGCGCCGC
CCTAG
mRNA sequenceShow/hide mRNA sequence
ATGAGAGTGCTTTCTCAGACATTTCGTTGCCATAAACGCCCAATTGCAAATCCAGACGTTCCGAAACCTTCTTCTTCGTCAACCGAGGATCCAGTTGCTGTGACATTGAG
CGTCAAATCGAAGCCGAAGCCGTGGTGTGTGTATCTCATCATCTCCTCCAATTTCCCCATCAAAACCTATGTTGGGGTCACCCTCAACTTCGCTCGCCGTTTGAAACAAC
ATAATGGTGAAATAGAAGGAGGTGCAAAAGCAACTCGTGCAGGACGACCCTGGATCTGTGCGTGCACAATTCATGGTTTTAAAGACCAAAGTCAAGCTTGTGAGTTTGAA
TCAAAATGGAAAGAAGTTTCAAGGAAATTGCCCCATCAGAGGAAGAAGAATGATATGGGAAAGCAGGTGGATGATCAGACATTAAGATTGCTCAAGCACAGGGAAGGAGC
TCTGGAAAAAGTGAAGTCACCAGTCACACTCTTCACGTACGCGCCTAGAGCCGCGTACTCCTCAAACATTCTTACGTCCGCTTTGAACCTCAGAAACTGTGGAAAAAACA
GCCAAAAGCTGGTGATCATCACGAACCCGATCGTCAACGGCGTCGATATTATCGGCGGCAGCCGGAACCTACCTCCGACCGCCCTCTTCACCACCATCTCCGCCGGCAAA
CACAGCCCATGCCGGAGACGACAAACGTTGCCGCCACCGCCACCAGGGACGCCCGTTTTTTCCCCACGACGGCTGCCGCCAAGCTCCGGGATGGCTCGTAGACGGTCAGC
CGGAGGATTTTGGTGGCCATCAGGTTCCATCTCCGGCCCCAGAAGTCCTGTAATGAAGTGGATAGGTAGGGCTCGTCGAAGTAGGGCTGAAGCTCCACCTCAAGCGCCGC
CCTAG
Protein sequenceShow/hide protein sequence
MRVLSQTFRCHKRPIANPDVPKPSSSSTEDPVAVTLSVKSKPKPWCVYLIISSNFPIKTYVGVTLNFARRLKQHNGEIEGGAKATRAGRPWICACTIHGFKDQSQACEFE
SKWKEVSRKLPHQRKKNDMGKQVDDQTLRLLKHREGALEKVKSPVTLFTYAPRAAYSSNILTSALNLRNCGKNSQKLVIITNPIVNGVDIIGGSRNLPPTALFTTISAGK
HSPCRRRQTLPPPPPGTPVFSPRRLPPSSGMARRRSAGGFWWPSGSISGPRSPVMKWIGRARRSRAEAPPQAPP