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Sgr012485 (gene) of Monk fruit (Qingpiguo) v1 genome

Gene IDSgr012485
OrganismSiraitia grosvenorii cv. Qingpiguo (Monk fruit (Qingpiguo) v1)
DescriptionSm-like protein LSM7
Genome locationtig00153414:33465..40721
RNA-Seq ExpressionSgr012485
SyntenySgr012485
Gene Ontology termsGO:0000398 - mRNA splicing, via spliceosome (biological process)
GO:0000956 - nuclear-transcribed mRNA catabolic process (biological process)
GO:0005688 - U6 snRNP (cellular component)
GO:0005689 - U12-type spliceosomal complex (cellular component)
GO:0016021 - integral component of membrane (cellular component)
GO:0071004 - U2-type prespliceosome (cellular component)
GO:0071013 - catalytic step 2 spliceosome (cellular component)
GO:0097526 - spliceosomal tri-snRNP complex (cellular component)
GO:0120115 - Lsm2-8 complex (cellular component)
GO:1990726 - Lsm1-7-Pat1 complex (cellular component)
GO:0003723 - RNA binding (molecular function)
InterPro domainsIPR001163 - LSM domain, eukaryotic/archaea-type
IPR010920 - LSM domain superfamily
IPR017132 - Sm-like protein Lsm7
IPR044641 - Sm-like protein Lsm7/SmG


Homology Show/hide homology
GenBank top hitse value%identityAlignment
CBI24863.3 unnamed protein product, partial [Vitis vinifera]4.2e-2995.83Show/hide
Query:  LFQSSRKETVLDLAKFVDKGVQVKLTGGRQVTGTLKGYDQLLNLVLDEAIEFLRDPDDPLKTTDQTRRLGLI
        LFQS RKETVLDLAKFVDKGVQVKLTGGRQVTGTLKGYDQLLNLVLDEA+EFLRDPDDP KTTDQTRRLGLI
Subjt:  LFQSSRKETVLDLAKFVDKGVQVKLTGGRQVTGTLKGYDQLLNLVLDEAIEFLRDPDDPLKTTDQTRRLGLI

KAG8365332.1 hypothetical protein BUALT_Bualt18G0093700 [Buddleja alternifolia]2.9e-3095.95Show/hide
Query:  VALFQSSRKETVLDLAKFVDKGVQVKLTGGRQVTGTLKGYDQLLNLVLDEAIEFLRDPDDPLKTTDQTRRLGLI
        V++FQS RKETVLDLAKFVDKGVQVKLTGGRQVTGTLKGYDQLLNLVLDEAIEFLRDPDDPLKTTDQTRRLGLI
Subjt:  VALFQSSRKETVLDLAKFVDKGVQVKLTGGRQVTGTLKGYDQLLNLVLDEAIEFLRDPDDPLKTTDQTRRLGLI

OMO69793.1 hypothetical protein CCACVL1_19268 [Corchorus capsularis]1.9e-2995.83Show/hide
Query:  LFQSSRKETVLDLAKFVDKGVQVKLTGGRQVTGTLKGYDQLLNLVLDEAIEFLRDPDDPLKTTDQTRRLGLI
        +FQS RKETVLDLAKFVDKGVQVKLTGGRQVTGTLKGYDQLLNLVLDEA+EFLRDPDDPLKTTDQTRRLGLI
Subjt:  LFQSSRKETVLDLAKFVDKGVQVKLTGGRQVTGTLKGYDQLLNLVLDEAIEFLRDPDDPLKTTDQTRRLGLI

RVX02989.1 Sm-like protein LSM7 [Vitis vinifera]1.9e-2992.11Show/hide
Query:  LFQSSRKETVLDLAKFVDKGVQVKLTGGRQVTGTLKGYDQLLNLVLDEAIEFLRDPDDPLKTTDQTRRLGLITVQK
        LFQS RKETVLDLAKFVDKGVQVKLTGGRQVTGTLKGYDQLLNLVLDEA+EFLRDPDDP KTTDQTRRLGLI   K
Subjt:  LFQSSRKETVLDLAKFVDKGVQVKLTGGRQVTGTLKGYDQLLNLVLDEAIEFLRDPDDPLKTTDQTRRLGLITVQK

XP_038984132.1 sm-like protein LSM7 [Phoenix dactylifera]6.5e-3098.61Show/hide
Query:  LFQSSRKETVLDLAKFVDKGVQVKLTGGRQVTGTLKGYDQLLNLVLDEAIEFLRDPDDPLKTTDQTRRLGLI
        LFQS RKETVLDLAKFVDKGVQVKLTGGRQVTGTLKGYDQLLNLVLDEAIEFLRDPDDPLKTTDQTRRLGLI
Subjt:  LFQSSRKETVLDLAKFVDKGVQVKLTGGRQVTGTLKGYDQLLNLVLDEAIEFLRDPDDPLKTTDQTRRLGLI

TrEMBL top hitse value%identityAlignment
A0A1R3HHK1 Sm domain-containing protein9.2e-3095.83Show/hide
Query:  LFQSSRKETVLDLAKFVDKGVQVKLTGGRQVTGTLKGYDQLLNLVLDEAIEFLRDPDDPLKTTDQTRRLGLI
        +FQS RKETVLDLAKFVDKGVQVKLTGGRQVTGTLKGYDQLLNLVLDEA+EFLRDPDDPLKTTDQTRRLGLI
Subjt:  LFQSSRKETVLDLAKFVDKGVQVKLTGGRQVTGTLKGYDQLLNLVLDEAIEFLRDPDDPLKTTDQTRRLGLI

A0A1R3IE97 Sm domain-containing protein9.2e-3095.83Show/hide
Query:  LFQSSRKETVLDLAKFVDKGVQVKLTGGRQVTGTLKGYDQLLNLVLDEAIEFLRDPDDPLKTTDQTRRLGLI
        +FQS RKETVLDLAKFVDKGVQVKLTGGRQVTGTLKGYDQLLNLVLDEA+EFLRDPDDPLKTTDQTRRLGLI
Subjt:  LFQSSRKETVLDLAKFVDKGVQVKLTGGRQVTGTLKGYDQLLNLVLDEAIEFLRDPDDPLKTTDQTRRLGLI

A0A218WA84 Sm domain-containing protein4.6e-2994.44Show/hide
Query:  LFQSSRKETVLDLAKFVDKGVQVKLTGGRQVTGTLKGYDQLLNLVLDEAIEFLRDPDDPLKTTDQTRRLGLI
        + QS RKETVLDLAKFVDKGVQVKLTGGRQVTGTLKGYDQLLNLVLDEA+EFLRDPDDPLKTTDQTRRLGLI
Subjt:  LFQSSRKETVLDLAKFVDKGVQVKLTGGRQVTGTLKGYDQLLNLVLDEAIEFLRDPDDPLKTTDQTRRLGLI

A0A438J1Z4 Sm-like protein LSM79.2e-3092.11Show/hide
Query:  LFQSSRKETVLDLAKFVDKGVQVKLTGGRQVTGTLKGYDQLLNLVLDEAIEFLRDPDDPLKTTDQTRRLGLITVQK
        LFQS RKETVLDLAKFVDKGVQVKLTGGRQVTGTLKGYDQLLNLVLDEA+EFLRDPDDP KTTDQTRRLGLI   K
Subjt:  LFQSSRKETVLDLAKFVDKGVQVKLTGGRQVTGTLKGYDQLLNLVLDEAIEFLRDPDDPLKTTDQTRRLGLITVQK

D7T2Y2 Sm domain-containing protein2.0e-2995.83Show/hide
Query:  LFQSSRKETVLDLAKFVDKGVQVKLTGGRQVTGTLKGYDQLLNLVLDEAIEFLRDPDDPLKTTDQTRRLGLI
        LFQS RKETVLDLAKFVDKGVQVKLTGGRQVTGTLKGYDQLLNLVLDEA+EFLRDPDDP KTTDQTRRLGLI
Subjt:  LFQSSRKETVLDLAKFVDKGVQVKLTGGRQVTGTLKGYDQLLNLVLDEAIEFLRDPDDPLKTTDQTRRLGLI

SwissProt top hitse value%identityAlignment
O74499 U6 snRNA-associated Sm-like protein LSm73.1e-1454.29Show/hide
Query:  RKETVLDLAKFVDKGVQVKLTGGRQVTGTLKGYDQLLNLVLDEAIEFLRDPDDPLKTTDQTRRLGLITVQ
        RKE++LDL+++ D+ +Q   TGGRQ+TG LKG+DQL+NLVLD+  E LR+P+D  K T   R+LGL+ V+
Subjt:  RKETVLDLAKFVDKGVQVKLTGGRQVTGTLKGYDQLLNLVLDEAIEFLRDPDDPLKTTDQTRRLGLITVQ

Q54HF6 Probable U6 snRNA-associated Sm-like protein LSm71.9e-1659.7Show/hide
Query:  RKETVLDLAKFVDKGVQVKLTGGRQVTGTLKGYDQLLNLVLDEAIEFLRDPDDPLKTTDQTRRLGLI
        +KE++LDL KF+ K + VK TGGR+V G LKGYDQL+N+ LD+  EF+RD +DPL TTD+ R LGL+
Subjt:  RKETVLDLAKFVDKGVQVKLTGGRQVTGTLKGYDQLLNLVLDEAIEFLRDPDDPLKTTDQTRRLGLI

Q9CQQ8 U6 snRNA-associated Sm-like protein LSm73.0e-1754.29Show/hide
Query:  QSSRKETVLDLAKFVDKGVQVKLTGGRQVTGTLKGYDQLLNLVLDEAIEFLRDPDDPLKTTDQTRRLGLI
        +  +KE++LDL+K++DK ++VK  GGR+ +G LKG+D LLNLVLD  +E++RDPDD  K T+ TR+LGL+
Subjt:  QSSRKETVLDLAKFVDKGVQVKLTGGRQVTGTLKGYDQLLNLVLDEAIEFLRDPDDPLKTTDQTRRLGLI

Q9SI54 Sm-like protein LSM71.5e-2994.2Show/hide
Query:  SSRKETVLDLAKFVDKGVQVKLTGGRQVTGTLKGYDQLLNLVLDEAIEFLRDPDDPLKTTDQTRRLGLI
        S RKETVLDLAKFVDKGVQVKLTGGRQVTGTLKGYDQLLNLVLDEA+EF+RD DDPLKTTDQTRRLGLI
Subjt:  SSRKETVLDLAKFVDKGVQVKLTGGRQVTGTLKGYDQLLNLVLDEAIEFLRDPDDPLKTTDQTRRLGLI

Q9UK45 U6 snRNA-associated Sm-like protein LSm71.3e-1755.71Show/hide
Query:  QSSRKETVLDLAKFVDKGVQVKLTGGRQVTGTLKGYDQLLNLVLDEAIEFLRDPDDPLKTTDQTRRLGLI
        +  +KE++LDL+K++DK ++VK  GGR+ +G LKG+D LLNLVLD  IE++RDPDD  K T+ TR+LGL+
Subjt:  QSSRKETVLDLAKFVDKGVQVKLTGGRQVTGTLKGYDQLLNLVLDEAIEFLRDPDDPLKTTDQTRRLGLI

Arabidopsis top hitse value%identityAlignment
AT2G03870.1 Small nuclear ribonucleoprotein family protein1.1e-3094.2Show/hide
Query:  SSRKETVLDLAKFVDKGVQVKLTGGRQVTGTLKGYDQLLNLVLDEAIEFLRDPDDPLKTTDQTRRLGLI
        S RKETVLDLAKFVDKGVQVKLTGGRQVTGTLKGYDQLLNLVLDEA+EF+RD DDPLKTTDQTRRLGLI
Subjt:  SSRKETVLDLAKFVDKGVQVKLTGGRQVTGTLKGYDQLLNLVLDEAIEFLRDPDDPLKTTDQTRRLGLI

AT2G03870.2 Small nuclear ribonucleoprotein family protein1.1e-3094.2Show/hide
Query:  SSRKETVLDLAKFVDKGVQVKLTGGRQVTGTLKGYDQLLNLVLDEAIEFLRDPDDPLKTTDQTRRLGLI
        S RKETVLDLAKFVDKGVQVKLTGGRQVTGTLKGYDQLLNLVLDEA+EF+RD DDPLKTTDQTRRLGLI
Subjt:  SSRKETVLDLAKFVDKGVQVKLTGGRQVTGTLKGYDQLLNLVLDEAIEFLRDPDDPLKTTDQTRRLGLI

AT2G23930.1 probable small nuclear ribonucleoprotein G9.8e-0851.06Show/hide
Query:  SRKETVLDLAKFVDKGVQVKLTGGRQVTGTLKGYDQLLNLVLDEAIE
        SR     DL K++DK +Q+KL   R VTGTL+G+DQ +NLV+D  +E
Subjt:  SRKETVLDLAKFVDKGVQVKLTGGRQVTGTLKGYDQLLNLVLDEAIE

AT2G23930.2 probable small nuclear ribonucleoprotein G1.6e-0554.29Show/hide
Query:  VDKGVQVKLTGGRQVTGTLKGYDQLLNLVLDEAIE
        +DK +Q+KL   R VTGTL+G+DQ +NLV+D  +E
Subjt:  VDKGVQVKLTGGRQVTGTLKGYDQLLNLVLDEAIE

AT3G11500.1 Small nuclear ribonucleoprotein family protein3.7e-0748.94Show/hide
Query:  SRKETVLDLAKFVDKGVQVKLTGGRQVTGTLKGYDQLLNLVLDEAIE
        SR     DL K++DK +Q+KL   R V GTL+G+DQ +NLV+D  +E
Subjt:  SRKETVLDLAKFVDKGVQVKLTGGRQVTGTLKGYDQLLNLVLDEAIE


Sequences Show/hide sequences
CDS sequenceShow/hide CDS sequence
ATGGGTGTTGCCTTGTTTCAGTCAAGCAGAAAAGAAACTGTTTTAGACTTGGCGAAGTTTGTAGATAAAGGTGTTCAAGTGAAGCTTACTGGTGGTAGACAAGTGACTGG
AACACTGAAAGGATATGATCAGTTACTCAATCTTGTGCTAGATGAAGCTATTGAATTTCTAAGAGATCCAGATGATCCATTGAAGACAACTGATCAAACAAGGCGACTTG
GCCTGATAACGGTACAGAAGAGATTGCCAACCCTTTCATTCAACCAGATGGAACTTAGATTGCATCTTTTCATATCTGTAACACCCTTCAATGTGAAGATGATAATCCAT
TGTGGCTGTTGCAGCAGCTTCATCTTTTTCTCAGTTGTGGAGCCAAAGAAAAAGCAAAGTGAAGAAGAAGACAAAAACAAATCGCCGCATCGGCACCGGAACCCAGTCAA
ACCGACACGTTTTCTACATCCGGAGCACCTATTCACCTCTCGCTTCGCTGATTCGTCAGGTTTCGGACGATCGGCCGCCGTCGGATTCCTGCGAGACTCAGAAATAAACC
GAAATTTCTCCGGCGAGCGAGACGAGGTAGATCTCGGACTTTTCTCTCCGGAAAATTTCATCGACATACTGGCCGTCGTCGTCGTGGTAGCTGTAGCGTTAAAGCACTTC
TGGCACATATTATTGGTGGCCGGATTACCGGTGAGGCCGCAGTTGTTGACGCAAAGCGTGATCGTCTCCGGGACTTTGAACTCGGTCTCCTCCTTCTCGGTTCTCTGA
mRNA sequenceShow/hide mRNA sequence
ATGGGTGTTGCCTTGTTTCAGTCAAGCAGAAAAGAAACTGTTTTAGACTTGGCGAAGTTTGTAGATAAAGGTGTTCAAGTGAAGCTTACTGGTGGTAGACAAGTGACTGG
AACACTGAAAGGATATGATCAGTTACTCAATCTTGTGCTAGATGAAGCTATTGAATTTCTAAGAGATCCAGATGATCCATTGAAGACAACTGATCAAACAAGGCGACTTG
GCCTGATAACGGTACAGAAGAGATTGCCAACCCTTTCATTCAACCAGATGGAACTTAGATTGCATCTTTTCATATCTGTAACACCCTTCAATGTGAAGATGATAATCCAT
TGTGGCTGTTGCAGCAGCTTCATCTTTTTCTCAGTTGTGGAGCCAAAGAAAAAGCAAAGTGAAGAAGAAGACAAAAACAAATCGCCGCATCGGCACCGGAACCCAGTCAA
ACCGACACGTTTTCTACATCCGGAGCACCTATTCACCTCTCGCTTCGCTGATTCGTCAGGTTTCGGACGATCGGCCGCCGTCGGATTCCTGCGAGACTCAGAAATAAACC
GAAATTTCTCCGGCGAGCGAGACGAGGTAGATCTCGGACTTTTCTCTCCGGAAAATTTCATCGACATACTGGCCGTCGTCGTCGTGGTAGCTGTAGCGTTAAAGCACTTC
TGGCACATATTATTGGTGGCCGGATTACCGGTGAGGCCGCAGTTGTTGACGCAAAGCGTGATCGTCTCCGGGACTTTGAACTCGGTCTCCTCCTTCTCGGTTCTCTGA
Protein sequenceShow/hide protein sequence
MGVALFQSSRKETVLDLAKFVDKGVQVKLTGGRQVTGTLKGYDQLLNLVLDEAIEFLRDPDDPLKTTDQTRRLGLITVQKRLPTLSFNQMELRLHLFISVTPFNVKMIIH
CGCCSSFIFFSVVEPKKKQSEEEDKNKSPHRHRNPVKPTRFLHPEHLFTSRFADSSGFGRSAAVGFLRDSEINRNFSGERDEVDLGLFSPENFIDILAVVVVVAVALKHF
WHILLVAGLPVRPQLLTQSVIVSGTLNSVSSFSVL