CuGenDBv2

Gene ID	Sgr014905
Organism	Siraitia grosvenorii cv. Qingpiguo (Monk fruit (Qingpiguo) v1)
Description	Homeobox protein knotted-1-like 3
Genome location	tig00002075:56921..59832
RNA-Seq Expression	Sgr014905
Synteny	Sgr014905
Gene Ontology terms	GO:0006355 - regulation of transcription, DNA-templated (biological process) GO:0005634 - nucleus (cellular component) GO:0003677 - DNA binding (molecular function)
InterPro domains	IPR001356 - Homeobox domain IPR005539 - ELK domain IPR008422 - Homeobox KN domain IPR009057 - Homeobox-like domain superfamily

Homology

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GenBank top hits

e value

%identity

Alignment

KAG7029493.1 hypothetical protein SDJN02_07832, partial [Cucurbita argyrosperma subsp. argyrosperma]

9.4e-53

95.45

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Query:  RSLMERVRHELKHELKNGYKEKIVDIREEILRKRRAGKLPGDTTSVLKAWWQSHSKWPYPTEEDKAKLVQETGLQLKQINNWFINQRKRNWHTNPSTSTT
        RSLMERVRHELKHELKNGYKEKI+DIREEILRKRRAGKLPGDTTSVLKAWWQSHS WPYPTEEDKAKLVQETGLQLKQINNWFINQRKRNWHTNPSTSTT
Subjt:  RSLMERVRHELKHELKNGYKEKIVDIREEILRKRRAGKLPGDTTSVLKAWWQSHSKWPYPTEEDKAKLVQETGLQLKQINNWFINQRKRNWHTNPSTSTT

Query:  LKSKRKRYRH
        LK+KRKRY +
Subjt:  LKSKRKRYRH

XP_004138713.1 homeobox protein knotted-1-like 3 isoform X1 [Cucumis sativus]

5.5e-53

99.07

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Query:  RSLMERVRHELKHELKNGYKEKIVDIREEILRKRRAGKLPGDTTSVLKAWWQSHSKWPYPTEEDKAKLVQETGLQLKQINNWFINQRKRNWHTNPSTSTT
        RSLMERVRHELKHELKNGYKEKIVDIREEILRKRRAGKLPGDTTSVLKAWWQSHSKWPYPTEEDKAKLVQETGLQLKQINNWFINQRKRNWHTNPSTSTT
Subjt:  RSLMERVRHELKHELKNGYKEKIVDIREEILRKRRAGKLPGDTTSVLKAWWQSHSKWPYPTEEDKAKLVQETGLQLKQINNWFINQRKRNWHTNPSTSTT

Query:  LKSKRKR
        LK+KRKR
Subjt:  LKSKRKR

XP_011649838.1 homeobox protein knotted-1-like 3 isoform X3 [Cucumis sativus]

5.5e-53

99.07

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Query:  RSLMERVRHELKHELKNGYKEKIVDIREEILRKRRAGKLPGDTTSVLKAWWQSHSKWPYPTEEDKAKLVQETGLQLKQINNWFINQRKRNWHTNPSTSTT
        RSLMERVRHELKHELKNGYKEKIVDIREEILRKRRAGKLPGDTTSVLKAWWQSHSKWPYPTEEDKAKLVQETGLQLKQINNWFINQRKRNWHTNPSTSTT
Subjt:  RSLMERVRHELKHELKNGYKEKIVDIREEILRKRRAGKLPGDTTSVLKAWWQSHSKWPYPTEEDKAKLVQETGLQLKQINNWFINQRKRNWHTNPSTSTT

Query:  LKSKRKR
        LK+KRKR
Subjt:  LKSKRKR

XP_022132284.1 homeobox protein knotted-1-like 3 isoform X1 [Momordica charantia]

5.5e-53

99.07

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Query:  RSLMERVRHELKHELKNGYKEKIVDIREEILRKRRAGKLPGDTTSVLKAWWQSHSKWPYPTEEDKAKLVQETGLQLKQINNWFINQRKRNWHTNPSTSTT
        RSLMERVRHELKHELKNGYKEKIVDIREEILRKRRAGKLPGDTTSVLKAWWQSHSKWPYPTE+DKAKLVQETGLQLKQINNWFINQRKRNWHTNPSTSTT
Subjt:  RSLMERVRHELKHELKNGYKEKIVDIREEILRKRRAGKLPGDTTSVLKAWWQSHSKWPYPTEEDKAKLVQETGLQLKQINNWFINQRKRNWHTNPSTSTT

Query:  LKSKRKR
        LKSKRKR
Subjt:  LKSKRKR

XP_022132286.1 homeobox protein knotted-1-like 3 isoform X3 [Momordica charantia]

5.5e-53

99.07

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Query:  RSLMERVRHELKHELKNGYKEKIVDIREEILRKRRAGKLPGDTTSVLKAWWQSHSKWPYPTEEDKAKLVQETGLQLKQINNWFINQRKRNWHTNPSTSTT
        RSLMERVRHELKHELKNGYKEKIVDIREEILRKRRAGKLPGDTTSVLKAWWQSHSKWPYPTE+DKAKLVQETGLQLKQINNWFINQRKRNWHTNPSTSTT
Subjt:  RSLMERVRHELKHELKNGYKEKIVDIREEILRKRRAGKLPGDTTSVLKAWWQSHSKWPYPTEEDKAKLVQETGLQLKQINNWFINQRKRNWHTNPSTSTT

Query:  LKSKRKR
        LKSKRKR
Subjt:  LKSKRKR

TrEMBL top hits

e value

%identity

Alignment

A0A151QMA6 Homeobox protein knotted-1-like 3

2.3e-52

96.3

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Query:  RSLMERVRHELKHELKNGYKEKIVDIREEILRKRRAGKLPGDTTSVLKAWWQSHSKWPYPTEEDKAKLVQETGLQLKQINNWFINQRKRNWHTNPSTSTT
        RSLMERVRHELKHELK GYKEKIVDIREEILRKRRAGKLPGDTTSVLKAWWQSHSKWPYPTEEDKA+LVQETGLQLKQINNWFINQRKRNWH+NPSTST 
Subjt:  RSLMERVRHELKHELKNGYKEKIVDIREEILRKRRAGKLPGDTTSVLKAWWQSHSKWPYPTEEDKAKLVQETGLQLKQINNWFINQRKRNWHTNPSTSTT

Query:  LKSKRKRY
        LKSKRKRY
Subjt:  LKSKRKRY

A0A1S3BC76 LOW QUALITY PROTEIN: homeobox protein knotted-1-like 3

1.0e-52

98.13

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Query:  RSLMERVRHELKHELKNGYKEKIVDIREEILRKRRAGKLPGDTTSVLKAWWQSHSKWPYPTEEDKAKLVQETGLQLKQINNWFINQRKRNWHTNPSTSTT
        RSLMERVRHELKHELKNGYKEKIVDIREEILRKRRAGKLPGDTTSVLKAWWQSHSKWPYPTEEDKAKLVQETGLQLKQINNWFINQRKRNWHTNPSTST 
Subjt:  RSLMERVRHELKHELKNGYKEKIVDIREEILRKRRAGKLPGDTTSVLKAWWQSHSKWPYPTEEDKAKLVQETGLQLKQINNWFINQRKRNWHTNPSTSTT

Query:  LKSKRKR
        LK+KRKR
Subjt:  LKSKRKR

A0A6J1BRU5 homeobox protein knotted-1-like 3 isoform X3

2.7e-53

99.07

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Query:  RSLMERVRHELKHELKNGYKEKIVDIREEILRKRRAGKLPGDTTSVLKAWWQSHSKWPYPTEEDKAKLVQETGLQLKQINNWFINQRKRNWHTNPSTSTT
        RSLMERVRHELKHELKNGYKEKIVDIREEILRKRRAGKLPGDTTSVLKAWWQSHSKWPYPTE+DKAKLVQETGLQLKQINNWFINQRKRNWHTNPSTSTT
Subjt:  RSLMERVRHELKHELKNGYKEKIVDIREEILRKRRAGKLPGDTTSVLKAWWQSHSKWPYPTEEDKAKLVQETGLQLKQINNWFINQRKRNWHTNPSTSTT

Query:  LKSKRKR
        LKSKRKR
Subjt:  LKSKRKR

A0A6J1BS14 homeobox protein knotted-1-like 3 isoform X2

7.8e-53

99.06

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Query:  RSLMERVRHELKHELKNGYKEKIVDIREEILRKRRAGKLPGDTTSVLKAWWQSHSKWPYPTEEDKAKLVQETGLQLKQINNWFINQRKRNWHTNPSTSTT
        RSLMERVRHELKHELKNGYKEKIVDIREEILRKRRAGKLPGDTTSVLKAWWQSHSKWPYPTE+DKAKLVQETGLQLKQINNWFINQRKRNWHTNPSTSTT
Subjt:  RSLMERVRHELKHELKNGYKEKIVDIREEILRKRRAGKLPGDTTSVLKAWWQSHSKWPYPTEEDKAKLVQETGLQLKQINNWFINQRKRNWHTNPSTSTT

Query:  LKSKRK
        LKSKRK
Subjt:  LKSKRK

A0A6J1BSM6 homeobox protein knotted-1-like 3 isoform X1

2.7e-53

99.07

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Query:  RSLMERVRHELKHELKNGYKEKIVDIREEILRKRRAGKLPGDTTSVLKAWWQSHSKWPYPTEEDKAKLVQETGLQLKQINNWFINQRKRNWHTNPSTSTT
        RSLMERVRHELKHELKNGYKEKIVDIREEILRKRRAGKLPGDTTSVLKAWWQSHSKWPYPTE+DKAKLVQETGLQLKQINNWFINQRKRNWHTNPSTSTT
Subjt:  RSLMERVRHELKHELKNGYKEKIVDIREEILRKRRAGKLPGDTTSVLKAWWQSHSKWPYPTEEDKAKLVQETGLQLKQINNWFINQRKRNWHTNPSTSTT

Query:  LKSKRKR
        LKSKRKR
Subjt:  LKSKRKR

SwissProt top hits

e value

%identity

Alignment

O04136 Homeobox protein knotted-1-like 3

3.4e-53

95.33

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Query:  RSLMERVRHELKHELKNGYKEKIVDIREEILRKRRAGKLPGDTTSVLKAWWQSHSKWPYPTEEDKAKLVQETGLQLKQINNWFINQRKRNWHTNPSTSTT
        RSLMERVR ELKHELK GYKEKIVDIREEILRKRRAGKLPGDTTSVLKAWWQSHSKWPYPTEEDKA+LVQETGLQLKQINNWFINQRKRNWH+NPSTST 
Subjt:  RSLMERVRHELKHELKNGYKEKIVDIREEILRKRRAGKLPGDTTSVLKAWWQSHSKWPYPTEEDKAKLVQETGLQLKQINNWFINQRKRNWHTNPSTSTT

Query:  LKSKRKR
        LKSKRKR
Subjt:  LKSKRKR

O22300 Homeobox protein knotted-1-like LET12

3.5e-50

88.99

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Query:  RSLMERVRHELKHELKNGYKEKIVDIREEILRKRRAGKLPGDTTSVLKAWWQSHSKWPYPTEEDKAKLVQETGLQLKQINNWFINQRKRNWHTNPSTSTT
        RSLMERVR ELKHELK GYKEKIVDIREEILRKRRAGKLPGDTTSVLKAWWQSHSKWPYPTEEDKA+LVQETGLQLKQINNWFINQRKRNWH+NPSTS++
Subjt:  RSLMERVRHELKHELKNGYKEKIVDIREEILRKRRAGKLPGDTTSVLKAWWQSHSKWPYPTEEDKAKLVQETGLQLKQINNWFINQRKRNWHTNPSTSTT

Query:  LKSKRKRYR
         KS+ +  R
Subjt:  LKSKRKRYR

P48000 Homeobox protein knotted-1-like 3

6.3e-52

93.4

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Query:  RSLMERVRHELKHELKNGYKEKIVDIREEILRKRRAGKLPGDTTSVLKAWWQSHSKWPYPTEEDKAKLVQETGLQLKQINNWFINQRKRNWHTNPSTSTT
        RSLMERVR ELKHELK GYKEKIVDIREEILRKRRAGKLPGDTTSVLKAWWQSHSKWPYPTEEDKA+LVQETGLQLKQINNWFINQRKRNWH+NPS+ST 
Subjt:  RSLMERVRHELKHELKNGYKEKIVDIREEILRKRRAGKLPGDTTSVLKAWWQSHSKWPYPTEEDKAKLVQETGLQLKQINNWFINQRKRNWHTNPSTSTT

Query:  LKSKRK
        LK+KRK
Subjt:  LKSKRK

P48001 Homeobox protein knotted-1-like 4

1.6e-50

90.57

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Query:  RSLMERVRHELKHELKNGYKEKIVDIREEILRKRRAGKLPGDTTSVLKAWWQSHSKWPYPTEEDKAKLVQETGLQLKQINNWFINQRKRNWHTNPSTSTT
        RSLMERVR ELKHELK GYKEKIVDIREEILRKRRAGKLPGDTTSVLK+WWQSHSKWPYPTEEDKA+LVQETGLQLKQINNWFINQRKRNWH+NPS+ST 
Subjt:  RSLMERVRHELKHELKNGYKEKIVDIREEILRKRRAGKLPGDTTSVLKAWWQSHSKWPYPTEEDKAKLVQETGLQLKQINNWFINQRKRNWHTNPSTSTT

Query:  LKSKRK
         K+KR+
Subjt:  LKSKRK

Q0J6N4 Homeobox protein knotted-1-like 13

1.6e-50

88.68

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Query:  RSLMERVRHELKHELKNGYKEKIVDIREEILRKRRAGKLPGDTTSVLKAWWQSHSKWPYPTEEDKAKLVQETGLQLKQINNWFINQRKRNWHTNPSTSTT
        RSLMERVR ELKHELK GYKEK++DIREEILRKRRAGKLPGDTTS LKAWWQSH+KWPYPTEEDKA+LVQETGLQLKQINNWFINQRKRNWH+NPS+ST+
Subjt:  RSLMERVRHELKHELKNGYKEKIVDIREEILRKRRAGKLPGDTTSVLKAWWQSHSKWPYPTEEDKAKLVQETGLQLKQINNWFINQRKRNWHTNPSTSTT

Query:  LKSKRK
        +K+KRK
Subjt:  LKSKRK

Arabidopsis top hits

e value

%identity

Alignment

AT1G62990.1 KNOTTED-like homeobox of Arabidopsis thaliana 7

4.5e-45

80.19

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Query:  RSLMERVRHELKHELKNGYKEKIVDIREEILRKRRAGKLPGDTTSVLKAWWQSHSKWPYPTEEDKAKLVQETGLQLKQINNWFINQRKRNWHTNPSTSTT
        RSLMERVR ELK ELK G+K +I D+REEI+RKRRAGKLPGDTT+VLK WWQ H KWPYPTE+DKAKLV+ETGLQLKQINNWFINQRKRNWH N  + T+
Subjt:  RSLMERVRHELKHELKNGYKEKIVDIREEILRKRRAGKLPGDTTSVLKAWWQSHSKWPYPTEEDKAKLVQETGLQLKQINNWFINQRKRNWHTNPSTSTT

Query:  LKSKRK
        LKSKRK
Subjt:  LKSKRK

AT4G32040.1 KNOTTED1-like homeobox gene 5

8.8e-49

87.04

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Query:  RSLMERVRHELKHELKNGYKEKIVDIREEILRKRRAGKLPGDTTSVLKAWWQSHSKWPYPTEEDKAKLVQETGLQLKQINNWFINQRKRNWHTNPSTSTT
        RSLMERV+ ELKHELK G+KEKIVDIREEI+RKRRAGKLPGDTTSVLK WW++HSKWPYPTEEDKAKLVQETGLQLKQINNWFINQRKRNW++N STS+T
Subjt:  RSLMERVRHELKHELKNGYKEKIVDIREEILRKRRAGKLPGDTTSVLKAWWQSHSKWPYPTEEDKAKLVQETGLQLKQINNWFINQRKRNWHTNPSTSTT

Query:  L-KSKRKR
        L K+KRKR
Subjt:  L-KSKRKR

AT5G11060.1 KNOTTED1-like homeobox gene 4

1.1e-51

90.57

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Query:  RSLMERVRHELKHELKNGYKEKIVDIREEILRKRRAGKLPGDTTSVLKAWWQSHSKWPYPTEEDKAKLVQETGLQLKQINNWFINQRKRNWHTNPSTSTT
        RSLMERVR ELKHELK GYKEKIVDIREEILRKRRAGKLPGDTTSVLK+WWQSHSKWPYPTEEDKA+LVQETGLQLKQINNWFINQRKRNWH+NPS+ST 
Subjt:  RSLMERVRHELKHELKNGYKEKIVDIREEILRKRRAGKLPGDTTSVLKAWWQSHSKWPYPTEEDKAKLVQETGLQLKQINNWFINQRKRNWHTNPSTSTT

Query:  LKSKRK
         K+KR+
Subjt:  LKSKRK

AT5G25220.1 KNOTTED1-like homeobox gene 3

4.5e-53

93.4

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Query:  RSLMERVRHELKHELKNGYKEKIVDIREEILRKRRAGKLPGDTTSVLKAWWQSHSKWPYPTEEDKAKLVQETGLQLKQINNWFINQRKRNWHTNPSTSTT
        RSLMERVR ELKHELK GYKEKIVDIREEILRKRRAGKLPGDTTSVLKAWWQSHSKWPYPTEEDKA+LVQETGLQLKQINNWFINQRKRNWH+NPS+ST 
Subjt:  RSLMERVRHELKHELKNGYKEKIVDIREEILRKRRAGKLPGDTTSVLKAWWQSHSKWPYPTEEDKAKLVQETGLQLKQINNWFINQRKRNWHTNPSTSTT

Query:  LKSKRK
        LK+KRK
Subjt:  LKSKRK

AT5G25220.2 KNOTTED1-like homeobox gene 3

1.5e-53

93.46

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Query:  RSLMERVRHELKHELKNGYKEKIVDIREEILRKRRAGKLPGDTTSVLKAWWQSHSKWPYPTEEDKAKLVQETGLQLKQINNWFINQRKRNWHTNPSTSTT
        RSLMERVR ELKHELK GYKEKIVDIREEILRKRRAGKLPGDTTSVLKAWWQSHSKWPYPTEEDKA+LVQETGLQLKQINNWFINQRKRNWH+NPS+ST 
Subjt:  RSLMERVRHELKHELKNGYKEKIVDIREEILRKRRAGKLPGDTTSVLKAWWQSHSKWPYPTEEDKAKLVQETGLQLKQINNWFINQRKRNWHTNPSTSTT

Query:  LKSKRKR
        LK+KRKR
Subjt:  LKSKRKR

Sequences

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CDS sequence

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AGATCCTTGATGGAGAGGGTGAGACACGAATTGAAGCATGAACTAAAGAATGGCTACAAGGAGAAAATTGTAGACATAAGGGAGGAAATTTTACGAAAAAGGAGAGCAGG
TAAACTTCCTGGTGACACCACATCCGTCTTAAAAGCTTGGTGGCAATCACATTCAAAATGGCCATATCCTACTGAGGAAGATAAAGCAAAGTTGGTTCAGGAAACTGGTC
TGCAACTGAAGCAGATAAATAACTGGTTTATTAACCAGAGGAAGAGGAATTGGCACACTAATCCTTCAACTTCAACAACCTTGAAGAGTAAACGCAAAAGATATCGGCAT
CGGACGCTGCTGCTCCGAGACAGTCTCGATCCGAATCCGAAGAAATATCCACAGGAGGAATATGAAACTCCGACTCATGATCATGATCATCCTCCTCGATCCGATCGGGA
GCTCTCTCTTCTGATCGCAAGGTTTCAGCAATGGAGGAAGAAGAATCCATTCTCGAGCAAGAAATCTCCAATCGCACGCGGTGAGAGAGAGAGAGAGAGAAGGATAGATA
ATAACTTCAGCGTCCATGGAAGAAGCGAGCCGCAAATATAG

mRNA sequence

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Protein sequence

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RSLMERVRHELKHELKNGYKEKIVDIREEILRKRRAGKLPGDTTSVLKAWWQSHSKWPYPTEEDKAKLVQETGLQLKQINNWFINQRKRNWHTNPSTSTTLKSKRKRYRH
RTLLLRDSLDPNPKKYPQEEYETPTHDHDHPPRSDRELSLLIARFQQWRKKNPFSSKKSPIARGERERERRIDNNFSVHGRSEPQI

Sgr014905 (gene) of Monk fruit (Qingpiguo) v1 genome