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Sgr015130 (gene) of Monk fruit (Qingpiguo) v1 genome

Gene IDSgr015130
OrganismSiraitia grosvenorii cv. Qingpiguo (Monk fruit (Qingpiguo) v1)
DescriptionCold-inducible RNA binding protein
Genome locationtig00002956:977813..983068
RNA-Seq ExpressionSgr015130
SyntenySgr015130
Gene Ontology termsGO:0048026 - positive regulation of mRNA splicing, via spliceosome (biological process)
GO:0005689 - U12-type spliceosomal complex (cellular component)
GO:0003729 - mRNA binding (molecular function)
GO:0017069 - snRNA binding (molecular function)
InterPro domainsIPR000504 - RNA recognition motif domain
IPR012677 - Nucleotide-binding alpha-beta plait domain superfamily
IPR035979 - RNA-binding domain superfamily


Homology Show/hide homology
GenBank top hitse value%identityAlignment
KAG6607208.1 Cold-inducible RNA-binding protein B, partial [Cucurbita argyrosperma subsp. sororia]8.3e-3079.78Show/hide
Query:  EAFTNRLSSYTTIERLESLFSPFGAVSEARLVRDPKTQRPKGFGFVTFQTPVEAEKALKAMNGRIVDGRLIFVEFAKIRRRGRGVDATS
        + F +RLSSYTTIERLE+LFSPFG+VSEARL+RDPKTQRPKGFGFVTFQ+P EA+KAL+AM+GRIVDGRLIFVEFAK    G GVDA S
Subjt:  EAFTNRLSSYTTIERLESLFSPFGAVSEARLVRDPKTQRPKGFGFVTFQTPVEAEKALKAMNGRIVDGRLIFVEFAKIRRRGRGVDATS

XP_008457543.1 PREDICTED: cold-inducible RNA-binding protein B [Cucumis melo]3.7e-3078.65Show/hide
Query:  EAFTNRLSSYTTIERLESLFSPFGAVSEARLVRDPKTQRPKGFGFVTFQTPVEAEKALKAMNGRIVDGRLIFVEFAKIRRRGRGVDATS
        E F +RLSSYTTIERL+SLFSPFG++S+ARL+RDP+TQRPKGFGFVTFQ+PVEA+KAL+AM+GRIVDGRLIFVEFAK R+   GVD TS
Subjt:  EAFTNRLSSYTTIERLESLFSPFGAVSEARLVRDPKTQRPKGFGFVTFQTPVEAEKALKAMNGRIVDGRLIFVEFAKIRRRGRGVDATS

XP_022949004.1 cold-inducible RNA-binding protein B-like [Cucurbita moschata]1.7e-3080.9Show/hide
Query:  EAFTNRLSSYTTIERLESLFSPFGAVSEARLVRDPKTQRPKGFGFVTFQTPVEAEKALKAMNGRIVDGRLIFVEFAKIRRRGRGVDATS
        + F +RLSSYTTIERLE+LFSPFG+VSEARL+RDPKTQRPKGFGFVTFQ+P EA+KAL+AM+GRIVDGRLIFVEFAK   RG GVDA S
Subjt:  EAFTNRLSSYTTIERLESLFSPFGAVSEARLVRDPKTQRPKGFGFVTFQTPVEAEKALKAMNGRIVDGRLIFVEFAKIRRRGRGVDATS

XP_023523197.1 cold-inducible RNA-binding protein-like [Cucurbita pepo subsp. pepo]4.9e-3082.02Show/hide
Query:  EAFTNRLSSYTTIERLESLFSPFGAVSEARLVRDPKTQRPKGFGFVTFQTPVEAEKALKAMNGRIVDGRLIFVEFAKIRRRGRGVDATS
        + F +RLSSYTTIERLESLFSPFG+VSEARL+RDPKTQRPKGFGFVTFQ+  EA+KAL AMNGRIVDGRLIFVEFAK   RG GVDA S
Subjt:  EAFTNRLSSYTTIERLESLFSPFGAVSEARLVRDPKTQRPKGFGFVTFQTPVEAEKALKAMNGRIVDGRLIFVEFAKIRRRGRGVDATS

XP_038895198.1 small RNA-binding protein 11, chloroplastic-like [Benincasa hispida]5.2e-3281.72Show/hide
Query:  REEEEAFTNRLSSYTTIERLESLFSPFGAVSEARLVRDPKTQRPKGFGFVTFQTPVEAEKALKAMNGRIVDGRLIFVEFAKIRRRGRGVDATS
        R   + F +RLSSYTTIERLESLFSPFG+VSEARL+RDPKTQRPKGFGFVTFQ+PVEA+KAL+AMNGRIVDGRLIFVEFAK RR   GVDA S
Subjt:  REEEEAFTNRLSSYTTIERLESLFSPFGAVSEARLVRDPKTQRPKGFGFVTFQTPVEAEKALKAMNGRIVDGRLIFVEFAKIRRRGRGVDATS

TrEMBL top hitse value%identityAlignment
A0A0A0KQ26 Cold-inducible RNA binding protein2.2e-2881.82Show/hide
Query:  EAFTNRLSSYTTIERLESLFSPFGAVSEARLVRDPKTQRPKGFGFVTFQTPVEAEKALKAMNGRIVDGRLIFVEFAK
        E F +RLSSYTT+ERL++LFSPFG++SEARL+RDPKT+RPKGFGFVTFQ+P EA+KALKAM+GRIVDGRLIFVEFAK
Subjt:  EAFTNRLSSYTTIERLESLFSPFGAVSEARLVRDPKTQRPKGFGFVTFQTPVEAEKALKAMNGRIVDGRLIFVEFAK

A0A1S3C5W5 cold-inducible RNA-binding protein B1.8e-3078.65Show/hide
Query:  EAFTNRLSSYTTIERLESLFSPFGAVSEARLVRDPKTQRPKGFGFVTFQTPVEAEKALKAMNGRIVDGRLIFVEFAKIRRRGRGVDATS
        E F +RLSSYTTIERL+SLFSPFG++S+ARL+RDP+TQRPKGFGFVTFQ+PVEA+KAL+AM+GRIVDGRLIFVEFAK R+   GVD TS
Subjt:  EAFTNRLSSYTTIERLESLFSPFGAVSEARLVRDPKTQRPKGFGFVTFQTPVEAEKALKAMNGRIVDGRLIFVEFAKIRRRGRGVDATS

A0A6J1DM71 small RNA-binding protein 11, chloroplastic1.2e-2984.15Show/hide
Query:  EAFTNRLSSYTTIERLESLFSPFGAVSEARLVRDPKTQRPKGFGFVTFQTPVEAEKALKAMNGRIVDGRLIFVEFAKIRRRG
        + F +RLSSYTTIERL+SLFS FGAVSEARLVRDPKT RPKGFGFVTFQ+PVEAEKA++AMNGRIVDGRLIFVEFA  R RG
Subjt:  EAFTNRLSSYTTIERLESLFSPFGAVSEARLVRDPKTQRPKGFGFVTFQTPVEAEKALKAMNGRIVDGRLIFVEFAKIRRRG

A0A6J1GBJ9 cold-inducible RNA-binding protein B-like8.1e-3180.9Show/hide
Query:  EAFTNRLSSYTTIERLESLFSPFGAVSEARLVRDPKTQRPKGFGFVTFQTPVEAEKALKAMNGRIVDGRLIFVEFAKIRRRGRGVDATS
        + F +RLSSYTTIERLE+LFSPFG+VSEARL+RDPKTQRPKGFGFVTFQ+P EA+KAL+AM+GRIVDGRLIFVEFAK   RG GVDA S
Subjt:  EAFTNRLSSYTTIERLESLFSPFGAVSEARLVRDPKTQRPKGFGFVTFQTPVEAEKALKAMNGRIVDGRLIFVEFAKIRRRGRGVDATS

A0A6J1KF23 cold-inducible RNA-binding protein B-like8.1e-3180.9Show/hide
Query:  EAFTNRLSSYTTIERLESLFSPFGAVSEARLVRDPKTQRPKGFGFVTFQTPVEAEKALKAMNGRIVDGRLIFVEFAKIRRRGRGVDATS
        + F +RLSSYTTIERLE+LFSPFG+VSEARL+RDPKTQRPKGFGFVTFQ+P EA+KAL+AM+GRIVDGRLIFVEFAK   RG GVDA S
Subjt:  EAFTNRLSSYTTIERLESLFSPFGAVSEARLVRDPKTQRPKGFGFVTFQTPVEAEKALKAMNGRIVDGRLIFVEFAKIRRRGRGVDATS

SwissProt top hitse value%identityAlignment
O89086 RNA-binding protein 31.3e-1245.88Show/hide
Query:  EEEEAFTNRLSSYTTIERLESLFSPFGAVSEARLVRDPKTQRPKGFGFVTFQTPVEAEKALKAMNGRIVDGRLIFVEFAKIRRRG
        EE + F   L+  T  + LE  FS FG +SE  +V+D +TQR +GFGF+TF  P  A  A++AMNG  +DGR I V+ A    RG
Subjt:  EEEEAFTNRLSSYTTIERLESLFSPFGAVSEARLVRDPKTQRPKGFGFVTFQTPVEAEKALKAMNGRIVDGRLIFVEFAKIRRRG

P98179 RNA-binding protein 31.6e-1245.88Show/hide
Query:  EEEEAFTNRLSSYTTIERLESLFSPFGAVSEARLVRDPKTQRPKGFGFVTFQTPVEAEKALKAMNGRIVDGRLIFVEFAKIRRRG
        EE + F   L+  T  + LE  FS FG +SE  +V+D +TQR +GFGF+TF  P  A  A++AMNG  +DGR I V+ A    RG
Subjt:  EEEEAFTNRLSSYTTIERLESLFSPFGAVSEARLVRDPKTQRPKGFGFVTFQTPVEAEKALKAMNGRIVDGRLIFVEFAKIRRRG

Q28IQ9 Cold-inducible RNA-binding protein9.6e-1346.84Show/hide
Query:  EEEEAFTNRLSSYTTIERLESLFSPFGAVSEARLVRDPKTQRPKGFGFVTFQTPVEAEKALKAMNGRIVDGRLIFVEFA
        +E + F   L+  TT E LE +FS +G V+E  +V+D +++R +GFGFVTF+ P +A+ A+ AMNG+ VDGR I V+ A
Subjt:  EEEEAFTNRLSSYTTIERLESLFSPFGAVSEARLVRDPKTQRPKGFGFVTFQTPVEAEKALKAMNGRIVDGRLIFVEFA

Q9DED4 Cold-inducible RNA-binding protein B9.6e-1345.68Show/hide
Query:  LREEEEAFTNRLSSYTTIERLESLFSPFGAVSEARLVRDPKTQRPKGFGFVTFQTPVEAEKALKAMNGRIVDGRLIFVEFA
        + +E + F   L+  T  E LE +FS +G +SE  +V+D +T+R +GFGFVTF+ P +A+ A+ AMNG+ VDGR I V+ A
Subjt:  LREEEEAFTNRLSSYTTIERLESLFSPFGAVSEARLVRDPKTQRPKGFGFVTFQTPVEAEKALKAMNGRIVDGRLIFVEFA

W8E7I1 RNA-binding protein 31.6e-1245.88Show/hide
Query:  EEEEAFTNRLSSYTTIERLESLFSPFGAVSEARLVRDPKTQRPKGFGFVTFQTPVEAEKALKAMNGRIVDGRLIFVEFAKIRRRG
        EE + F   L+  T    LE  FS FG +SE  +V+D +TQR +GFGF+TF  P  A  A++AMNG  +DGR I V+ A    RG
Subjt:  EEEEAFTNRLSSYTTIERLESLFSPFGAVSEARLVRDPKTQRPKGFGFVTFQTPVEAEKALKAMNGRIVDGRLIFVEFAKIRRRG

Arabidopsis top hitse value%identityAlignment
AT1G73530.1 RNA-binding (RRM/RBD/RNP motifs) family protein1.1e-1138.64Show/hide
Query:  PTPPLREEEEAFTNRLSSYTTIERLESLFSPFGAVSEARLVRDPKTQRPKGFGFVTFQTPVEAEKALKAMNGRIVDGRLIFVEFAKIR
        P+     + + + + LS  TT + L   F  FG +    +V D    RPKGF F+ ++T  EA KA++ M+G+ +DGR+IFVE AK R
Subjt:  PTPPLREEEEAFTNRLSSYTTIERLESLFSPFGAVSEARLVRDPKTQRPKGFGFVTFQTPVEAEKALKAMNGRIVDGRLIFVEFAKIR

AT2G37510.1 RNA-binding (RRM/RBD/RNP motifs) family protein2.2e-1244.44Show/hide
Query:  FTNRLSSYTTIERLESLFSPFGAVSEARLVRDPKTQRPKGFGFVTFQTPVEAEKALKAMNGRIVDGRLIFVEFAKIRRRGR
        F + LS  TT E+L+  F+ FG + +AR++ D  + R KGFGFVT+ T  +AEKA   MN + +DG +IFV+ A+ R   R
Subjt:  FTNRLSSYTTIERLESLFSPFGAVSEARLVRDPKTQRPKGFGFVTFQTPVEAEKALKAMNGRIVDGRLIFVEFAKIRRRGR

AT3G46020.1 RNA-binding (RRM/RBD/RNP motifs) family protein1.6e-2361.73Show/hide
Query:  REEEEAFTNRLSSYTTIERLESLFSPFGAVSEARLVRDPKTQRPKGFGFVTFQTPVEAEKALKAMNGRIVDGRLIFVEFAK
        R   + F +RLS+YTT + L  LFSPFG + EARL+RD +TQRPKGFGF+TF +  +A KALK+++G+IVDGRLIFVE AK
Subjt:  REEEEAFTNRLSSYTTIERLESLFSPFGAVSEARLVRDPKTQRPKGFGFVTFQTPVEAEKALKAMNGRIVDGRLIFVEFAK

AT5G06210.1 RNA binding (RRM/RBD/RNP motifs) family protein1.7e-1247.44Show/hide
Query:  FTNRLSSYTTIERLESLFSPFGAVSEARLVRDPKTQRPKGFGFVTFQTPVEAEKALKAMNGRIVDGRLIFVEFAKIRR
        F   LS  TT + L   FS  G V EA++V D  + R KGFGFVTF +  EA+KAL   NG+ ++GR IFV++AK ++
Subjt:  FTNRLSSYTTIERLESLFSPFGAVSEARLVRDPKTQRPKGFGFVTFQTPVEAEKALKAMNGRIVDGRLIFVEFAKIRR

AT5G59860.1 RNA-binding (RRM/RBD/RNP motifs) family protein1.2e-1861.97Show/hide
Query:  LSSYTTIERLESLFSPFGAVSEARLVRDPKTQRPKGFGFVTFQTPVEAEKALKAMNGRIVDGRLIFVEFAK
        LS+YTT + L  LF+PF     ARL++D +TQRPKGFGF+TF++  +A+KALKA+NG+IV+GRLIFVE AK
Subjt:  LSSYTTIERLESLFSPFGAVSEARLVRDPKTQRPKGFGFVTFQTPVEAEKALKAMNGRIVDGRLIFVEFAK


Sequences Show/hide sequences
CDS sequenceShow/hide CDS sequence
TTGAAGAGGAGAACGGCACGACCTAATCAGTATGTTATGAGACCAACACCCCCACTTAGAGAAGAAGAAGAAGCCTTCACGAATAGACTGTCGTCATACACAACGATCGA
ACGGCTAGAGAGCCTGTTTTCACCCTTCGGTGCAGTCTCTGAAGCTCGGCTAGTCAGAGACCCGAAAACCCAGAGGCCCAAAGGGTTCGGTTTTGTCACATTTCAAACGC
CGGTCGAGGCGGAGAAGGCTCTTAAAGCCATGAACGGTCGGATAGTCGATGGAAGATTGATTTTCGTTGAATTTGCAAAGATAAGGAGACGTGGCCGTGGGGTAGATGCT
ACATCCTGA
mRNA sequenceShow/hide mRNA sequence
TTGAAGAGGAGAACGGCACGACCTAATCAGTATGTTATGAGACCAACACCCCCACTTAGAGAAGAAGAAGAAGCCTTCACGAATAGACTGTCGTCATACACAACGATCGA
ACGGCTAGAGAGCCTGTTTTCACCCTTCGGTGCAGTCTCTGAAGCTCGGCTAGTCAGAGACCCGAAAACCCAGAGGCCCAAAGGGTTCGGTTTTGTCACATTTCAAACGC
CGGTCGAGGCGGAGAAGGCTCTTAAAGCCATGAACGGTCGGATAGTCGATGGAAGATTGATTTTCGTTGAATTTGCAAAGATAAGGAGACGTGGCCGTGGGGTAGATGCT
ACATCCTGA
Protein sequenceShow/hide protein sequence
LKRRTARPNQYVMRPTPPLREEEEAFTNRLSSYTTIERLESLFSPFGAVSEARLVRDPKTQRPKGFGFVTFQTPVEAEKALKAMNGRIVDGRLIFVEFAKIRRRGRGVDA
TS