CuGenDBv2

Gene ID	Sgr015344
Organism	Siraitia grosvenorii cv. Qingpiguo (Monk fruit (Qingpiguo) v1)
Description	exosome complex component RRP4 homolog
Genome location	tig00003469:260775..272385
RNA-Seq Expression	Sgr015344
Synteny	Sgr015344
Gene Ontology terms	GO:0000178 - exosome (RNase complex) (cellular component) GO:0003723 - RNA binding (molecular function)
InterPro domains	IPR004088 - K Homology domain, type 1 IPR026699 - Exosome complex RNA-binding protein 1/RRP40/RRP4 IPR036612 - K Homology domain, type 1 superfamily IPR036691 - Endonuclease/exonuclease/phosphatase superfamily

Homology

Show/hide homology

GenBank top hits

e value

%identity

Alignment

XP_022155677.1 exosome complex component RRP4 homolog isoform X1 [Momordica charantia]

1.2e-65

82.47

Show/hide

Query:  FTQLERGQLLTVSPYLVKRRKQHFHHLEQYGIDLILGCNGFIWIGEHVEPTKDMIIEDQVNKSEQKGSKSDGNFGNLEEQKRIYTPLETRQNICRTANAV
        + +LERGQLLTVSPYLVKRRKQHFHHLEQYGIDLILGCNGFIWIGEHV+P +DM+IEDQVNK EQKG KS+GNFGNLEEQ+R+YTPLETR+NICR ANAV
Subjt:  FTQLERGQLLTVSPYLVKRRKQHFHHLEQYGIDLILGCNGFIWIGEHVEPTKDMIIEDQVNKSEQKGSKSDGNFGNLEEQKRIYTPLETRQNICRTANAV

Query:  RVLSTLGFIITVEVIKERVNSSVSLNVDVHEMLHSEFCVLTAEKDAERRTSKAK
        RVLSTLGFI+TVEVI E VN S+SLN+DVHEML SEFCVL AE + ERRTS  K
Subjt:  RVLSTLGFIITVEVIKERVNSSVSLNVDVHEMLHSEFCVLTAEKDAERRTSKAK

XP_022155678.1 exosome complex component RRP4 homolog isoform X2 [Momordica charantia]

1.2e-65

82.47

Show/hide

Query:  FTQLERGQLLTVSPYLVKRRKQHFHHLEQYGIDLILGCNGFIWIGEHVEPTKDMIIEDQVNKSEQKGSKSDGNFGNLEEQKRIYTPLETRQNICRTANAV
        + +LERGQLLTVSPYLVKRRKQHFHHLEQYGIDLILGCNGFIWIGEHV+P +DM+IEDQVNK EQKG KS+GNFGNLEEQ+R+YTPLETR+NICR ANAV
Subjt:  FTQLERGQLLTVSPYLVKRRKQHFHHLEQYGIDLILGCNGFIWIGEHVEPTKDMIIEDQVNKSEQKGSKSDGNFGNLEEQKRIYTPLETRQNICRTANAV

Query:  RVLSTLGFIITVEVIKERVNSSVSLNVDVHEMLHSEFCVLTAEKDAERRTSKAK
        RVLSTLGFI+TVEVI E VN S+SLN+DVHEML SEFCVL AE + ERRTS  K
Subjt:  RVLSTLGFIITVEVIKERVNSSVSLNVDVHEMLHSEFCVLTAEKDAERRTSKAK

XP_022931250.1 exosome complex component RRP4 homolog [Cucurbita moschata]

8.5e-64

80.65

Show/hide

Query:  FTQLERGQLLTVSPYLVKRRKQHFHHLEQYGIDLILGCNGFIWIGEHVEPTKDMIIEDQVNKSEQKGSKSDGNFGNLEEQKRIYTPLETRQNICRTANAV
        + +LERGQLLTVSPYLVKRRKQHFHHLEQYGIDLILGCNGFIWIGEHV+PT+DM++ED +NKSEQKGSK +G+FGN + Q+RIYTPLETRQNICRTANA+
Subjt:  FTQLERGQLLTVSPYLVKRRKQHFHHLEQYGIDLILGCNGFIWIGEHVEPTKDMIIEDQVNKSEQKGSKSDGNFGNLEEQKRIYTPLETRQNICRTANAV

Query:  RVLSTLGFIITVEVIKERVNSSVSLNVDVHEMLHSEFCVLTAEKDAERRTSKAKG
        RVLS LGFI++VEVI E V+ S+SLN+DVHEML SEFCVLTAEK+AERRTS  KG
Subjt:  RVLSTLGFIITVEVIKERVNSSVSLNVDVHEMLHSEFCVLTAEKDAERRTSKAKG

XP_022995373.1 exosome complex component RRP4 homolog [Cucurbita maxima]

4.2e-63

80.52

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Query:  FTQLERGQLLTVSPYLVKRRKQHFHHLEQYGIDLILGCNGFIWIGEHVEPTKDMIIEDQVNKSEQKGSKSDGNFGNLEEQKRIYTPLETRQNICRTANAV
        + +LERGQLLTVSPYLVKRRKQHFHHLEQYGIDLILGCNGFIWIGEHV+PT+DM++ED +NKSEQKGSK +G+FGN + Q+RIYTPLETRQNICRTANA+
Subjt:  FTQLERGQLLTVSPYLVKRRKQHFHHLEQYGIDLILGCNGFIWIGEHVEPTKDMIIEDQVNKSEQKGSKSDGNFGNLEEQKRIYTPLETRQNICRTANAV

Query:  RVLSTLGFIITVEVIKERVNSSVSLNVDVHEMLHSEFCVLTAEKDAERRTSKAK
        RVLS LGFI++VEVI E V+ S+SLN+DVHEML SEFCVLTAEK+AERRTS  K
Subjt:  RVLSTLGFIITVEVIKERVNSSVSLNVDVHEMLHSEFCVLTAEKDAERRTSKAK

XP_023533481.1 exosome complex component RRP4 homolog [Cucurbita pepo subsp. pepo]

3.2e-63

80.52

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Query:  FTQLERGQLLTVSPYLVKRRKQHFHHLEQYGIDLILGCNGFIWIGEHVEPTKDMIIEDQVNKSEQKGSKSDGNFGNLEEQKRIYTPLETRQNICRTANAV
        + +LERGQLLTVSPYLVKRRKQHFHHLEQYGIDLILGCNGFIWIGEHV+PT+DM++ED +NKSEQKGSK +GNFGN + Q+RIYTPLETRQNICRTANA+
Subjt:  FTQLERGQLLTVSPYLVKRRKQHFHHLEQYGIDLILGCNGFIWIGEHVEPTKDMIIEDQVNKSEQKGSKSDGNFGNLEEQKRIYTPLETRQNICRTANAV

Query:  RVLSTLGFIITVEVIKERVNSSVSLNVDVHEMLHSEFCVLTAEKDAERRTSKAK
        RVLS LGFI++VEVI E V+  +SLN+DVHEML SEFCVLTAEK+AERRTS  K
Subjt:  RVLSTLGFIITVEVIKERVNSSVSLNVDVHEMLHSEFCVLTAEKDAERRTSKAK

TrEMBL top hits

e value

%identity

Alignment

A0A6J1DNK7 exosome complex component RRP4 homolog isoform X2

5.7e-66

82.47

Show/hide

Query:  FTQLERGQLLTVSPYLVKRRKQHFHHLEQYGIDLILGCNGFIWIGEHVEPTKDMIIEDQVNKSEQKGSKSDGNFGNLEEQKRIYTPLETRQNICRTANAV
        + +LERGQLLTVSPYLVKRRKQHFHHLEQYGIDLILGCNGFIWIGEHV+P +DM+IEDQVNK EQKG KS+GNFGNLEEQ+R+YTPLETR+NICR ANAV
Subjt:  FTQLERGQLLTVSPYLVKRRKQHFHHLEQYGIDLILGCNGFIWIGEHVEPTKDMIIEDQVNKSEQKGSKSDGNFGNLEEQKRIYTPLETRQNICRTANAV

Query:  RVLSTLGFIITVEVIKERVNSSVSLNVDVHEMLHSEFCVLTAEKDAERRTSKAK
        RVLSTLGFI+TVEVI E VN S+SLN+DVHEML SEFCVL AE + ERRTS  K
Subjt:  RVLSTLGFIITVEVIKERVNSSVSLNVDVHEMLHSEFCVLTAEKDAERRTSKAK

A0A6J1DQ00 exosome complex component RRP4 homolog isoform X1

5.7e-66

82.47

Show/hide

Query:  FTQLERGQLLTVSPYLVKRRKQHFHHLEQYGIDLILGCNGFIWIGEHVEPTKDMIIEDQVNKSEQKGSKSDGNFGNLEEQKRIYTPLETRQNICRTANAV
        + +LERGQLLTVSPYLVKRRKQHFHHLEQYGIDLILGCNGFIWIGEHV+P +DM+IEDQVNK EQKG KS+GNFGNLEEQ+R+YTPLETR+NICR ANAV
Subjt:  FTQLERGQLLTVSPYLVKRRKQHFHHLEQYGIDLILGCNGFIWIGEHVEPTKDMIIEDQVNKSEQKGSKSDGNFGNLEEQKRIYTPLETRQNICRTANAV

Query:  RVLSTLGFIITVEVIKERVNSSVSLNVDVHEMLHSEFCVLTAEKDAERRTSKAK
        RVLSTLGFI+TVEVI E VN S+SLN+DVHEML SEFCVL AE + ERRTS  K
Subjt:  RVLSTLGFIITVEVIKERVNSSVSLNVDVHEMLHSEFCVLTAEKDAERRTSKAK

A0A6J1EXY1 exosome complex component RRP4 homolog

4.1e-64

80.65

Show/hide

Query:  FTQLERGQLLTVSPYLVKRRKQHFHHLEQYGIDLILGCNGFIWIGEHVEPTKDMIIEDQVNKSEQKGSKSDGNFGNLEEQKRIYTPLETRQNICRTANAV
        + +LERGQLLTVSPYLVKRRKQHFHHLEQYGIDLILGCNGFIWIGEHV+PT+DM++ED +NKSEQKGSK +G+FGN + Q+RIYTPLETRQNICRTANA+
Subjt:  FTQLERGQLLTVSPYLVKRRKQHFHHLEQYGIDLILGCNGFIWIGEHVEPTKDMIIEDQVNKSEQKGSKSDGNFGNLEEQKRIYTPLETRQNICRTANAV

Query:  RVLSTLGFIITVEVIKERVNSSVSLNVDVHEMLHSEFCVLTAEKDAERRTSKAKG
        RVLS LGFI++VEVI E V+ S+SLN+DVHEML SEFCVLTAEK+AERRTS  KG
Subjt:  RVLSTLGFIITVEVIKERVNSSVSLNVDVHEMLHSEFCVLTAEKDAERRTSKAKG

A0A6J1HGD9 exosome complex component RRP4 homolog isoform X1

3.5e-63

81.17

Show/hide

Query:  FTQLERGQLLTVSPYLVKRRKQHFHHLEQYGIDLILGCNGFIWIGEHVEPTKDMIIEDQVNKSEQKGSKSDGNFGNLEEQKRIYTPLETRQNICRTANAV
        + +LERGQLLTVSPYLVKRRKQHFHHLEQYGIDLI GCNGFIWIGEHV+PT+DM+IEDQVNKSEQKGSK +G FGN + Q+R+YTPLETRQNICRTANA+
Subjt:  FTQLERGQLLTVSPYLVKRRKQHFHHLEQYGIDLILGCNGFIWIGEHVEPTKDMIIEDQVNKSEQKGSKSDGNFGNLEEQKRIYTPLETRQNICRTANAV

Query:  RVLSTLGFIITVEVIKERVNSSVSLNVDVHEMLHSEFCVLTAEKDAERRTSKAK
        RVLS LGFI+TVEVI E V+ S SLN++VHEML SEFCVLTAEK+AERRTS  K
Subjt:  RVLSTLGFIITVEVIKERVNSSVSLNVDVHEMLHSEFCVLTAEKDAERRTSKAK

A0A6J1K7S0 exosome complex component RRP4 homolog

2.0e-63

80.52

Show/hide

Query:  FTQLERGQLLTVSPYLVKRRKQHFHHLEQYGIDLILGCNGFIWIGEHVEPTKDMIIEDQVNKSEQKGSKSDGNFGNLEEQKRIYTPLETRQNICRTANAV
        + +LERGQLLTVSPYLVKRRKQHFHHLEQYGIDLILGCNGFIWIGEHV+PT+DM++ED +NKSEQKGSK +G+FGN + Q+RIYTPLETRQNICRTANA+
Subjt:  FTQLERGQLLTVSPYLVKRRKQHFHHLEQYGIDLILGCNGFIWIGEHVEPTKDMIIEDQVNKSEQKGSKSDGNFGNLEEQKRIYTPLETRQNICRTANAV

Query:  RVLSTLGFIITVEVIKERVNSSVSLNVDVHEMLHSEFCVLTAEKDAERRTSKAK
        RVLS LGFI++VEVI E V+ S+SLN+DVHEML SEFCVLTAEK+AERRTS  K
Subjt:  RVLSTLGFIITVEVIKERVNSSVSLNVDVHEMLHSEFCVLTAEKDAERRTSKAK

SwissProt top hits

e value

%identity

Alignment

Q13868 Exosome complex component RRP4

2.7e-04

38.1

Show/hide

Query:  FTQLERGQLLTVSPYLVKRRKQHFHHLEQYGIDLILGCNGFIWIGEHVEPTKDMIIEDQVNKSEQKGSKSDGNFGNLEEQKRIYTPLETRQNICRTANAV
        + +L +G L+ VSP LVKR+K HFH L   G  +ILG NGFIWI     PT            E K  ++ G   NLE        L  R+ I R  N +
Subjt:  FTQLERGQLLTVSPYLVKRRKQHFHHLEQYGIDLILGCNGFIWIGEHVEPTKDMIIEDQVNKSEQKGSKSDGNFGNLEEQKRIYTPLETRQNICRTANAV

Query:  RVLST
          L T
Subjt:  RVLST

Q2KID0 Exosome complex component RRP4

2.1e-04

38.1

Show/hide

Query:  FTQLERGQLLTVSPYLVKRRKQHFHHLEQYGIDLILGCNGFIWIGEHVEPTKDMIIEDQVNKSEQKGSKSDGNFGNLEEQKRIYTPLETRQNICRTANAV
        + +L +G L+ VSP LVKR+K HFH L   G  +ILG NGFIW    V PT            E K   + G   NLE        L  R+ I R  N +
Subjt:  FTQLERGQLLTVSPYLVKRRKQHFHHLEQYGIDLILGCNGFIWIGEHVEPTKDMIIEDQVNKSEQKGSKSDGNFGNLEEQKRIYTPLETRQNICRTANAV

Query:  RVLST
          L+T
Subjt:  RVLST

Q8VBV3 Exosome complex component RRP4

9.2e-05

39.05

Show/hide

Query:  FTQLERGQLLTVSPYLVKRRKQHFHHLEQYGIDLILGCNGFIWIGEHVEPTKDMIIEDQVNKSEQKGSKSDGNFGNLEEQKRIYTPLETRQNICRTANAV
        + +L +G L+ VSP LVKR+K HFH L   G  +ILG NGFIWI     PT            E K   + G   NLE        L  R+ I R  N V
Subjt:  FTQLERGQLLTVSPYLVKRRKQHFHHLEQYGIDLILGCNGFIWIGEHVEPTKDMIIEDQVNKSEQKGSKSDGNFGNLEEQKRIYTPLETRQNICRTANAV

Query:  RVLST
         +L T
Subjt:  RVLST

Q9ZVT7 Exosome complex component RRP4 homolog

4.0e-40

58.44

Show/hide

Query:  FTQLERGQLLTVSPYLVKRRKQHFHHLEQYGIDLILGCNGFIWIGEHVEPTKDMIIEDQVNKSEQKGSKSDGNFGNLEEQKRIYTPLETRQNICRTANAV
        + +LE+GQLL V PYLVKR K HFH++E  GIDLI+GCNGFIW+GEHVE    M I+DQ ++ E   S S G     +EQ  I  PLETRQ ICR  NA+
Subjt:  FTQLERGQLLTVSPYLVKRRKQHFHHLEQYGIDLILGCNGFIWIGEHVEPTKDMIIEDQVNKSEQKGSKSDGNFGNLEEQKRIYTPLETRQNICRTANAV

Query:  RVLSTLGFIITVEVIKERVNSSVSLNVDVHEMLHSEFCVLTAEKDAERRTSKAK
        RVLS LGF +T+EVI E VN S S N+D+H+ML SEF V+ AE +AERR +K K
Subjt:  RVLSTLGFIITVEVIKERVNSSVSLNVDVHEMLHSEFCVLTAEKDAERRTSKAK

Arabidopsis top hits

e value

%identity

Alignment

AT1G03360.1 ribosomal RNA processing 4

2.8e-41

58.44

Show/hide

Query:  FTQLERGQLLTVSPYLVKRRKQHFHHLEQYGIDLILGCNGFIWIGEHVEPTKDMIIEDQVNKSEQKGSKSDGNFGNLEEQKRIYTPLETRQNICRTANAV
        + +LE+GQLL V PYLVKR K HFH++E  GIDLI+GCNGFIW+GEHVE    M I+DQ ++ E   S S G     +EQ  I  PLETRQ ICR  NA+
Subjt:  FTQLERGQLLTVSPYLVKRRKQHFHHLEQYGIDLILGCNGFIWIGEHVEPTKDMIIEDQVNKSEQKGSKSDGNFGNLEEQKRIYTPLETRQNICRTANAV

Query:  RVLSTLGFIITVEVIKERVNSSVSLNVDVHEMLHSEFCVLTAEKDAERRTSKAK
        RVLS LGF +T+EVI E VN S S N+D+H+ML SEF V+ AE +AERR +K K
Subjt:  RVLSTLGFIITVEVIKERVNSSVSLNVDVHEMLHSEFCVLTAEKDAERRTSKAK

Sequences

Show/hide sequences

CDS sequence

Show/hide CDS sequence

ATGAAGGACCCAAGTAGTCAGAAGATGAAGGACGCTTCTCAGAGTGGTAGGCCCAAGTGCATTGAGACCAACAGGAATTCTTTAGGAAAAAAGAAGAAATGGGGCCAAAG
TTTGAATAGAGGCCCAATGTGTTCAACTTCCCAGGGAAGGAAAGTGTCATTCTCGAACAACGAAGATCTCTTCTTTTTCGATAGTTCGCTTGCCTTAGAGGGAGTGAGTC
AGCAGTCGTTAGCCTCGAAGACAGAGGCAAATAGTGAAGTTGATAGTGAAGGCCAAGAAACAATTCTCTCTTTGGCGCAATCTAAGCACGAAAGAGACTCCATGGTAGAT
GAGGCTCAATGGCTCTATCTTGATCCAAGGCAAAATGGCCTTTCTTCAATCCTTGATAGCTTGGGCATGGAAATTATAATGTTTATGGTCCTAACTCTCATCGTGAAAGA
TCTTTATTTTGGGATGAAATTGGGGACATTAGTGAGTATTGTTCTAGATGTTGGTGCATCGGGAGAGGTTTTAACATTACCAGATGGCCTTCTGAAATTTCATCCAACAG
CTGGAAAGATGATAGAGGATTGGCCCCCGTTGAAAGACTCTATTGGCCACCATGCAACATCTACCCTGAGACAAGCTGAACATACCTCTTTTCTAAACACTCCCTCGAAA
TGTGAGAGGATATGCGACAGGCTGAACTCAACGATTTTTCTCTCGATCCTCACAGACACTTCAACGAAACAGCGGTCTGGCGCACCCCCTGTCGGAGAACTCCCCAGCTC
TTTGCAGAAGTTCGTGGTTTTCAGCATGATGGCCTACACCTTCAAGCAAGAAGCCAGAAATATGGAAAGCTTAATGCATTTGTACATTTTTACCCAGCTTGAGAGAGGTC
AGCTACTCACAGTATCACCATATCTAGTGAAGAGACGCAAACAACACTTCCATCATTTGGAGCAGTACGGAATTGACTTAATACTTGGATGCAATGGATTTATCTGGATT
GGGGAGCATGTTGAACCTACAAAGGATATGATAATAGAAGATCAAGTTAATAAATCTGAACAAAAGGGTTCAAAATCTGATGGAAATTTTGGTAACCTTGAAGAGCAAAA
AAGAATATATACCCCATTAGAGACACGCCAGAATATATGCAGAACTGCAAATGCTGTCCGGGTATTGTCTACCTTAGGTTTCATAATTACAGTAGAAGTTATAAAAGAGA
GAGTTAACTCGAGTGTCTCTTTGAACGTTGATGTACATGAAATGCTTCATTCAGAGTTTTGTGTTCTCACTGCAGAAAAAGATGCCGAACGAAGGACTTCTAAGGCAAAA
GGAAGTTGGAGGTTCACGGGGATTTATGGCAATCCCAATGCGGATAGAAGAAATGAAACTTGGGAGCTTATGGACCGCCGCAACAATGTGCCACCTTTTCCTTGGGTGGT
TGGGGGCGACTTCAATGAAATCACAAGAGATGCTGAGAAGAAAGGCAGAGTTGATAGAATATCTGGCCAGATGGATGCGTTCAGAGCCATTGTGAATAAATGCACCCTTA
TTCATCCAGGATACAGGGGAGATGATTTTACATGGACAAACGGACATCTTTCTTGCATTTAA

mRNA sequence

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Protein sequence

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MKDPSSQKMKDASQSGRPKCIETNRNSLGKKKKWGQSLNRGPMCSTSQGRKVSFSNNEDLFFFDSSLALEGVSQQSLASKTEANSEVDSEGQETILSLAQSKHERDSMVD
EAQWLYLDPRQNGLSSILDSLGMEIIMFMVLTLIVKDLYFGMKLGTLVSIVLDVGASGEVLTLPDGLLKFHPTAGKMIEDWPPLKDSIGHHATSTLRQAEHTSFLNTPSK
CERICDRLNSTIFLSILTDTSTKQRSGAPPVGELPSSLQKFVVFSMMAYTFKQEARNMESLMHLYIFTQLERGQLLTVSPYLVKRRKQHFHHLEQYGIDLILGCNGFIWI
GEHVEPTKDMIIEDQVNKSEQKGSKSDGNFGNLEEQKRIYTPLETRQNICRTANAVRVLSTLGFIITVEVIKERVNSSVSLNVDVHEMLHSEFCVLTAEKDAERRTSKAK
GSWRFTGIYGNPNADRRNETWELMDRRNNVPPFPWVVGGDFNEITRDAEKKGRVDRISGQMDAFRAIVNKCTLIHPGYRGDDFTWTNGHLSCI

Sgr015344 (gene) of Monk fruit (Qingpiguo) v1 genome