CuGenDBv2

Gene ID	Sgr015478
Organism	Siraitia grosvenorii cv. Qingpiguo (Monk fruit (Qingpiguo) v1)
Description	RNA polymerase II subunit B1 CTD phosphatase RPAP2 homolog
Genome location	tig00003991:739651..740412
RNA-Seq Expression	Sgr015478
Synteny	Sgr015478
Gene Ontology terms	GO:0070940 - dephosphorylation of RNA polymerase II C-terminal domain (biological process) GO:0005634 - nucleus (cellular component) GO:0005737 - cytoplasm (cellular component) GO:0008420 - RNA polymerase II CTD heptapeptide repeat phosphatase activity (molecular function) GO:0043175 - RNA polymerase core enzyme binding (molecular function) GO:0046872 - metal ion binding (molecular function)
InterPro domains	NA

Homology

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GenBank top hits

e value

%identity

Alignment

KAA0044516.1 putative RNA polymerase II subunit B1 CTD phosphatase RPAP2-like protein [Cucumis melo var. makuwa]

3.3e-23

74.68

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Query:  LSSSRAFAGRLQDERCSVLNPGKLKEIPRLFENRSLGSKKNMGNNCDLGLSGLEIQEKTENNVEEVPIEEWMGPSNAIE
        L +SRAF+GRLQDERCSV+NP KLK+I +LFEN SL SK+N+GNNCD   SGLEIQEK E+++ EVPIEEWMGPSNAIE
Subjt:  LSSSRAFAGRLQDERCSVLNPGKLKEIPRLFENRSLGSKKNMGNNCDLGLSGLEIQEKTENNVEEVPIEEWMGPSNAIE

TYK29645.1 putative RNA polymerase II subunit B1 CTD phosphatase RPAP2-like protein [Cucumis melo var. makuwa]

5.0e-24

77.22

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Query:  LSSSRAFAGRLQDERCSVLNPGKLKEIPRLFENRSLGSKKNMGNNCDLGLSGLEIQEKTENNVEEVPIEEWMGPSNAIE
        L +SRAF+GRLQDERCSV+NP KLKEI +LFEN SL SK+NMGNNCD   SGLEIQEK E+++ EVPIEEWMGPSNAIE
Subjt:  LSSSRAFAGRLQDERCSVLNPGKLKEIPRLFENRSLGSKKNMGNNCDLGLSGLEIQEKTENNVEEVPIEEWMGPSNAIE

XP_008454119.1 PREDICTED: putative RNA polymerase II subunit B1 CTD phosphatase RPAP2 homolog [Cucumis melo]

5.0e-24

77.22

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Query:  LSSSRAFAGRLQDERCSVLNPGKLKEIPRLFENRSLGSKKNMGNNCDLGLSGLEIQEKTENNVEEVPIEEWMGPSNAIE
        L +SRAF+GRLQDERCSV+NP KLKEI +LFEN SL SK+NMGNNCD   SGLEIQEK E+++ EVPIEEWMGPSNAIE
Subjt:  LSSSRAFAGRLQDERCSVLNPGKLKEIPRLFENRSLGSKKNMGNNCDLGLSGLEIQEKTENNVEEVPIEEWMGPSNAIE

XP_022145788.1 putative RNA polymerase II subunit B1 CTD phosphatase RPAP2 homolog [Momordica charantia]

8.3e-27

82.28

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Query:  LSSSRAFAGRLQDERCSVLNPGKLKEIPRLFENRSLGSKKNMGNNCDLGLSGLEIQEKTENNVEEVPIEEWMGPSNAIE
        L +SRAFAGRLQ+ERCSV+NP KLKEI RLFEN S  SK+NMGNNCDLGLS LEIQEK E+NV EVPIEEWMGPSNAIE
Subjt:  LSSSRAFAGRLQDERCSVLNPGKLKEIPRLFENRSLGSKKNMGNNCDLGLSGLEIQEKTENNVEEVPIEEWMGPSNAIE

XP_031739958.1 putative RNA polymerase II subunit B1 CTD phosphatase RPAP2 homolog [Cucumis sativus]

1.7e-24

78.48

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Query:  LSSSRAFAGRLQDERCSVLNPGKLKEIPRLFENRSLGSKKNMGNNCDLGLSGLEIQEKTENNVEEVPIEEWMGPSNAIE
        L +SRAF+GRLQDERCSV+NP KLKEI +LFEN SL SK+NMGNNCD   SGLEIQEK E+N+ EVPIEEWMGPSNAIE
Subjt:  LSSSRAFAGRLQDERCSVLNPGKLKEIPRLFENRSLGSKKNMGNNCDLGLSGLEIQEKTENNVEEVPIEEWMGPSNAIE

TrEMBL top hits

e value

%identity

Alignment

A0A0A0KVU3 RNA polymerase II subunit B1 CTD phosphatase RPAP2 homolog

8.4e-25

78.48

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Query:  LSSSRAFAGRLQDERCSVLNPGKLKEIPRLFENRSLGSKKNMGNNCDLGLSGLEIQEKTENNVEEVPIEEWMGPSNAIE
        L +SRAF+GRLQDERCSV+NP KLKEI +LFEN SL SK+NMGNNCD   SGLEIQEK E+N+ EVPIEEWMGPSNAIE
Subjt:  LSSSRAFAGRLQDERCSVLNPGKLKEIPRLFENRSLGSKKNMGNNCDLGLSGLEIQEKTENNVEEVPIEEWMGPSNAIE

A0A1S3BXZ9 RNA polymerase II subunit B1 CTD phosphatase RPAP2 homolog

2.4e-24

77.22

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Query:  LSSSRAFAGRLQDERCSVLNPGKLKEIPRLFENRSLGSKKNMGNNCDLGLSGLEIQEKTENNVEEVPIEEWMGPSNAIE
        L +SRAF+GRLQDERCSV+NP KLKEI +LFEN SL SK+NMGNNCD   SGLEIQEK E+++ EVPIEEWMGPSNAIE
Subjt:  LSSSRAFAGRLQDERCSVLNPGKLKEIPRLFENRSLGSKKNMGNNCDLGLSGLEIQEKTENNVEEVPIEEWMGPSNAIE

A0A5A7TQX7 RNA polymerase II subunit B1 CTD phosphatase RPAP2 homolog

1.6e-23

74.68

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Query:  LSSSRAFAGRLQDERCSVLNPGKLKEIPRLFENRSLGSKKNMGNNCDLGLSGLEIQEKTENNVEEVPIEEWMGPSNAIE
        L +SRAF+GRLQDERCSV+NP KLK+I +LFEN SL SK+N+GNNCD   SGLEIQEK E+++ EVPIEEWMGPSNAIE
Subjt:  LSSSRAFAGRLQDERCSVLNPGKLKEIPRLFENRSLGSKKNMGNNCDLGLSGLEIQEKTENNVEEVPIEEWMGPSNAIE

A0A5D3E2V9 RNA polymerase II subunit B1 CTD phosphatase RPAP2 homolog

2.4e-24

77.22

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Query:  LSSSRAFAGRLQDERCSVLNPGKLKEIPRLFENRSLGSKKNMGNNCDLGLSGLEIQEKTENNVEEVPIEEWMGPSNAIE
        L +SRAF+GRLQDERCSV+NP KLKEI +LFEN SL SK+NMGNNCD   SGLEIQEK E+++ EVPIEEWMGPSNAIE
Subjt:  LSSSRAFAGRLQDERCSVLNPGKLKEIPRLFENRSLGSKKNMGNNCDLGLSGLEIQEKTENNVEEVPIEEWMGPSNAIE

A0A6J1CWB1 RNA polymerase II subunit B1 CTD phosphatase RPAP2 homolog

4.0e-27

82.28

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Query:  LSSSRAFAGRLQDERCSVLNPGKLKEIPRLFENRSLGSKKNMGNNCDLGLSGLEIQEKTENNVEEVPIEEWMGPSNAIE
        L +SRAFAGRLQ+ERCSV+NP KLKEI RLFEN S  SK+NMGNNCDLGLS LEIQEK E+NV EVPIEEWMGPSNAIE
Subjt:  LSSSRAFAGRLQDERCSVLNPGKLKEIPRLFENRSLGSKKNMGNNCDLGLSGLEIQEKTENNVEEVPIEEWMGPSNAIE

SwissProt top hits

e value

%identity

Alignment

F4K1B1 Putative RNA polymerase II subunit B1 CTD phosphatase RPAP2 homolog

9.9e-07

44.3

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Query:  LSSSRAFAGRLQDERCSVLNPGKLKEIPRLFENRSLGSKKNMGNNCDLGLSGLEIQEKTENNVEEVPIEEWMGPSNAIE
        L  S+ F+G LQ+ R    +  KL EI  LF + SL  K ++  N DL LS L I+E      EE+ +E+WMGPSNA+E
Subjt:  LSSSRAFAGRLQDERCSVLNPGKLKEIPRLFENRSLGSKKNMGNNCDLGLSGLEIQEKTENNVEEVPIEEWMGPSNAIE

Arabidopsis top hits

e value

%identity

Alignment

AT5G26760.2 unknown protein

7.1e-08

44.3

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Query:  LSSSRAFAGRLQDERCSVLNPGKLKEIPRLFENRSLGSKKNMGNNCDLGLSGLEIQEKTENNVEEVPIEEWMGPSNAIE
        L  S+ F+G LQ+ R    +  KL EI  LF + SL  K ++  N DL LS L I+E      EE+ +E+WMGPSNA+E
Subjt:  LSSSRAFAGRLQDERCSVLNPGKLKEIPRLFENRSLGSKKNMGNNCDLGLSGLEIQEKTENNVEEVPIEEWMGPSNAIE

Sequences

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CDS sequence

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ATGCCGGCGTCCTCTCCGACGGCGATCGGCTCGGCAGCATCCGCTTACAGCAGGTTTGATGGATCGCCTCGGCAGTATCTCTATCTCTCCAGCAGCCGTGCCTTTGCTGG
AAGATTGCAAGATGAGAGGTGTTCAGTTTTGAATCCTGGGAAACTTAAAGAAATTCCAAGGCTGTTTGAGAATCGAAGTTTGGGTTCTAAGAAAAATATGGGGAATAATT
GTGATTTGGGGCTATCAGGCCTTGAAATTCAGGAGAAGACAGAAAACAATGTTGAAGAAGTTCCTATTGAAGAGTGGATGGGTCCATCAAATGCAATTGAAAACTAA

mRNA sequence

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Protein sequence

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MPASSPTAIGSAASAYSRFDGSPRQYLYLSSSRAFAGRLQDERCSVLNPGKLKEIPRLFENRSLGSKKNMGNNCDLGLSGLEIQEKTENNVEEVPIEEWMGPSNAIEN

Sgr015478 (gene) of Monk fruit (Qingpiguo) v1 genome