CuGenDBv2

Gene ID	Sgr016107
Organism	Siraitia grosvenorii cv. Qingpiguo (Monk fruit (Qingpiguo) v1)
Description	DNA-directed RNA polymerase subunit beta''
Genome location	tig00007400:64665..66072
RNA-Seq Expression	Sgr016107
Synteny	Sgr016107
Gene Ontology terms	GO:0006351 - transcription, DNA-templated (biological process) GO:0006412 - translation (biological process) GO:0015986 - ATP synthesis coupled proton transport (biological process) GO:0045263 - proton-transporting ATP synthase complex, coupling factor F(o) (cellular component) GO:0045261 - proton-transporting ATP synthase complex, catalytic core F(1) (cellular component) GO:0016021 - integral component of membrane (cellular component) GO:0005743 - mitochondrial inner membrane (cellular component) GO:0005886 - plasma membrane (cellular component) GO:0009535 - chloroplast thylakoid membrane (cellular component) GO:0015935 - small ribosomal subunit (cellular component) GO:0008270 - zinc ion binding (molecular function) GO:0005524 - ATP binding (molecular function) GO:0032549 - ribonucleoside binding (molecular function) GO:0003899 - DNA-directed 5'-3' RNA polymerase activity (molecular function) GO:0003735 - structural constituent of ribosome (molecular function) GO:0046933 - proton-transporting ATP synthase activity, rotational mechanism (molecular function) GO:0003677 - DNA binding (molecular function) GO:0000287 - magnesium ion binding (molecular function)
InterPro domains	IPR042102 - RNA polymerase Rpb1, domain 3 superfamily IPR038120 - RNA polymerase Rpb1, funnel domain superfamily

Homology

Show/hide homology

GenBank top hits

e value

%identity

Alignment

QID04122.1 RNA polymerase beta' subunit [Disanthus cercidifolius subsp. longipes]

4.2e-77

94.16

Show/hide

Query:  LHNPTQRNMEVLMAERADLVFHNKVIDGTAIKRLISRFLDHFGMAYTSHILDQIKTLGFQQATATSISLGIDDLLTIPSKGWLVQDAEQQSLILEKHHHY
        + NPTQRNMEVLMAERA+LVFHNKVIDGTA+KRLISR +DHFGMAYTSHILDQ+KTLGFQQATATSISLGIDDLLTIPSKGWLVQDAEQQSLILEKHHHY
Subjt:  LHNPTQRNMEVLMAERADLVFHNKVIDGTAIKRLISRFLDHFGMAYTSHILDQIKTLGFQQATATSISLGIDDLLTIPSKGWLVQDAEQQSLILEKHHHY

Query:  GNVHAVEKLRQSIEIWYATSEYLRQEMNPNFRMTDPFNPVHIMSFSGARGNISR
        GNVHAVEKLRQSIEIWYATSEYLRQEMNPNFRMTDPFNPVHIMSFSGARGN S+
Subjt:  GNVHAVEKLRQSIEIWYATSEYLRQEMNPNFRMTDPFNPVHIMSFSGARGNISR

QJS52311.1 RNA polymerase beta'' subunit [Indofevillea khasiana]

3.4e-79

94.34

Show/hide

Query:  VRNDLLHNPTQRNMEVLMAERADLVFHNKVIDGTAIKRLISRFLDHFGMAYTSHILDQIKTLGFQQATATSISLGIDDLLTIPSKGWLVQDAEQQSLILE
        + ++LL NPTQRNMEVLMAERADLVFHNKVIDGTAIKRLISR +DHFGMAYTSHILDQIKTLGFQQATATSISLGIDDLLTIPSKGWLVQDAEQQSLILE
Subjt:  VRNDLLHNPTQRNMEVLMAERADLVFHNKVIDGTAIKRLISRFLDHFGMAYTSHILDQIKTLGFQQATATSISLGIDDLLTIPSKGWLVQDAEQQSLILE

Query:  KHHHYGNVHAVEKLRQSIEIWYATSEYLRQEMNPNFRMTDPFNPVHIMSFSGARGNISR
        KHHHYGNVHAVEKLRQSIEIWYATSEYLRQEMNPNFRMTDPFNPVHIMSFSGARGN S+
Subjt:  KHHHYGNVHAVEKLRQSIEIWYATSEYLRQEMNPNFRMTDPFNPVHIMSFSGARGNISR

QWQ50133.1 RNA polymerase beta'' subunit [Cyclanthera pedata]

9.9e-79

93.71

Show/hide

Query:  VRNDLLHNPTQRNMEVLMAERADLVFHNKVIDGTAIKRLISRFLDHFGMAYTSHILDQIKTLGFQQATATSISLGIDDLLTIPSKGWLVQDAEQQSLILE
        + ++LL NPTQRNMEVLMAERADLVFHNKVIDGTAIKRLISR +DHFGMAYTSHILDQIKTLGFQQATATSISLGIDDLLTIPSKGWLVQDAEQQS ILE
Subjt:  VRNDLLHNPTQRNMEVLMAERADLVFHNKVIDGTAIKRLISRFLDHFGMAYTSHILDQIKTLGFQQATATSISLGIDDLLTIPSKGWLVQDAEQQSLILE

Query:  KHHHYGNVHAVEKLRQSIEIWYATSEYLRQEMNPNFRMTDPFNPVHIMSFSGARGNISR
        KHHHYGNVHAVEKLRQSIEIWYATSEYLRQEMNPNFRMTDPFNPVHIMSFSGARGN S+
Subjt:  KHHHYGNVHAVEKLRQSIEIWYATSEYLRQEMNPNFRMTDPFNPVHIMSFSGARGNISR

YP_009525176.1 RNA polymerase beta subunit [Hodgsonia macrocarpa]

3.4e-79

94.34

Show/hide

Query:  VRNDLLHNPTQRNMEVLMAERADLVFHNKVIDGTAIKRLISRFLDHFGMAYTSHILDQIKTLGFQQATATSISLGIDDLLTIPSKGWLVQDAEQQSLILE
        + ++LL NPTQRNMEVLMAERADLVFHNKVIDGTAIKRLISR +DHFGMAYTSHILDQIKTLGFQQATATSISLGIDDLLTIPSKGWLVQDAEQQSLILE
Subjt:  VRNDLLHNPTQRNMEVLMAERADLVFHNKVIDGTAIKRLISRFLDHFGMAYTSHILDQIKTLGFQQATATSISLGIDDLLTIPSKGWLVQDAEQQSLILE

Query:  KHHHYGNVHAVEKLRQSIEIWYATSEYLRQEMNPNFRMTDPFNPVHIMSFSGARGNISR
        KHHHYGNVHAVEKLRQSIEIWYATSEYLRQEMNPNFRMTDPFNPVHIMSFSGARGN S+
Subjt:  KHHHYGNVHAVEKLRQSIEIWYATSEYLRQEMNPNFRMTDPFNPVHIMSFSGARGNISR

YP_010131084.1 RNA polymerase beta'' subunit [Benincasa hispida]

5.8e-79

93.71

Show/hide

Query:  VRNDLLHNPTQRNMEVLMAERADLVFHNKVIDGTAIKRLISRFLDHFGMAYTSHILDQIKTLGFQQATATSISLGIDDLLTIPSKGWLVQDAEQQSLILE
        + ++LL NPTQRNMEVLMAERADLVFHNKVIDGTAIKRLISR +DHFGMAYTSHILDQ+KTLGFQQATATSISLGIDDLLTIPSKGWLVQDAEQQSLILE
Subjt:  VRNDLLHNPTQRNMEVLMAERADLVFHNKVIDGTAIKRLISRFLDHFGMAYTSHILDQIKTLGFQQATATSISLGIDDLLTIPSKGWLVQDAEQQSLILE

Query:  KHHHYGNVHAVEKLRQSIEIWYATSEYLRQEMNPNFRMTDPFNPVHIMSFSGARGNISR
        KHHHYGNVHAVEKLRQSIEIWYATSEYLRQEMNPNFRMTDPFNPVHIMSFSGARGN S+
Subjt:  KHHHYGNVHAVEKLRQSIEIWYATSEYLRQEMNPNFRMTDPFNPVHIMSFSGARGNISR

TrEMBL top hits

e value

%identity

Alignment

A0A346QNZ0 DNA-directed RNA polymerase subunit beta''

1.6e-79

94.34

Show/hide

Query:  VRNDLLHNPTQRNMEVLMAERADLVFHNKVIDGTAIKRLISRFLDHFGMAYTSHILDQIKTLGFQQATATSISLGIDDLLTIPSKGWLVQDAEQQSLILE
        + ++LL NPTQRNMEVLMAERADLVFHNKVIDGTAIKRLISR +DHFGMAYTSHILDQIKTLGFQQATATSISLGIDDLLTIPSKGWLVQDAEQQSLILE
Subjt:  VRNDLLHNPTQRNMEVLMAERADLVFHNKVIDGTAIKRLISRFLDHFGMAYTSHILDQIKTLGFQQATATSISLGIDDLLTIPSKGWLVQDAEQQSLILE

Query:  KHHHYGNVHAVEKLRQSIEIWYATSEYLRQEMNPNFRMTDPFNPVHIMSFSGARGNISR
        KHHHYGNVHAVEKLRQSIEIWYATSEYLRQEMNPNFRMTDPFNPVHIMSFSGARGN S+
Subjt:  KHHHYGNVHAVEKLRQSIEIWYATSEYLRQEMNPNFRMTDPFNPVHIMSFSGARGNISR

A0A6G6A8I5 DNA-directed RNA polymerase subunit beta''

2.0e-77

94.16

Show/hide

Query:  LHNPTQRNMEVLMAERADLVFHNKVIDGTAIKRLISRFLDHFGMAYTSHILDQIKTLGFQQATATSISLGIDDLLTIPSKGWLVQDAEQQSLILEKHHHY
        + NPTQRNMEVLMAERA+LVFHNKVIDGTA+KRLISR +DHFGMAYTSHILDQ+KTLGFQQATATSISLGIDDLLTIPSKGWLVQDAEQQSLILEKHHHY
Subjt:  LHNPTQRNMEVLMAERADLVFHNKVIDGTAIKRLISRFLDHFGMAYTSHILDQIKTLGFQQATATSISLGIDDLLTIPSKGWLVQDAEQQSLILEKHHHY

Query:  GNVHAVEKLRQSIEIWYATSEYLRQEMNPNFRMTDPFNPVHIMSFSGARGNISR
        GNVHAVEKLRQSIEIWYATSEYLRQEMNPNFRMTDPFNPVHIMSFSGARGN S+
Subjt:  GNVHAVEKLRQSIEIWYATSEYLRQEMNPNFRMTDPFNPVHIMSFSGARGNISR

A0A6M4RBT8 DNA-directed RNA polymerase subunit beta''

3.4e-77

94.74

Show/hide

Query:  NPTQRNMEVLMAERADLVFHNKVIDGTAIKRLISRFLDHFGMAYTSHILDQIKTLGFQQATATSISLGIDDLLTIPSKGWLVQDAEQQSLILEKHHHYGN
        NPTQ+NMEVLMAERA+LVFHNKVIDGTAIKRLISR +DHFGMAYTSHILDQ+KTLGFQQATATSISLGIDDLLTIPSKGWLVQDAEQQSL+LEKHHHYGN
Subjt:  NPTQRNMEVLMAERADLVFHNKVIDGTAIKRLISRFLDHFGMAYTSHILDQIKTLGFQQATATSISLGIDDLLTIPSKGWLVQDAEQQSLILEKHHHYGN

Query:  VHAVEKLRQSIEIWYATSEYLRQEMNPNFRMTDPFNPVHIMSFSGARGNISR
        VHAVEKLRQSIEIWYATSEYLRQEMNPNFRMTDPFNPVHIMSFSGARGN S+
Subjt:  VHAVEKLRQSIEIWYATSEYLRQEMNPNFRMTDPFNPVHIMSFSGARGNISR

A0A6M4SPN7 DNA-directed RNA polymerase subunit beta''

1.6e-79

94.34

Show/hide

Query:  VRNDLLHNPTQRNMEVLMAERADLVFHNKVIDGTAIKRLISRFLDHFGMAYTSHILDQIKTLGFQQATATSISLGIDDLLTIPSKGWLVQDAEQQSLILE
        + ++LL NPTQRNMEVLMAERADLVFHNKVIDGTAIKRLISR +DHFGMAYTSHILDQIKTLGFQQATATSISLGIDDLLTIPSKGWLVQDAEQQSLILE
Subjt:  VRNDLLHNPTQRNMEVLMAERADLVFHNKVIDGTAIKRLISRFLDHFGMAYTSHILDQIKTLGFQQATATSISLGIDDLLTIPSKGWLVQDAEQQSLILE

Query:  KHHHYGNVHAVEKLRQSIEIWYATSEYLRQEMNPNFRMTDPFNPVHIMSFSGARGNISR
        KHHHYGNVHAVEKLRQSIEIWYATSEYLRQEMNPNFRMTDPFNPVHIMSFSGARGN S+
Subjt:  KHHHYGNVHAVEKLRQSIEIWYATSEYLRQEMNPNFRMTDPFNPVHIMSFSGARGNISR

A0A7T3QNJ7 RNA polymerase beta'' subunit

2.8e-79

93.71

Show/hide

Query:  VRNDLLHNPTQRNMEVLMAERADLVFHNKVIDGTAIKRLISRFLDHFGMAYTSHILDQIKTLGFQQATATSISLGIDDLLTIPSKGWLVQDAEQQSLILE
        + ++LL NPTQRNMEVLMAERADLVFHNKVIDGTAIKRLISR +DHFGMAYTSHILDQ+KTLGFQQATATSISLGIDDLLTIPSKGWLVQDAEQQSLILE
Subjt:  VRNDLLHNPTQRNMEVLMAERADLVFHNKVIDGTAIKRLISRFLDHFGMAYTSHILDQIKTLGFQQATATSISLGIDDLLTIPSKGWLVQDAEQQSLILE

Query:  KHHHYGNVHAVEKLRQSIEIWYATSEYLRQEMNPNFRMTDPFNPVHIMSFSGARGNISR
        KHHHYGNVHAVEKLRQSIEIWYATSEYLRQEMNPNFRMTDPFNPVHIMSFSGARGN S+
Subjt:  KHHHYGNVHAVEKLRQSIEIWYATSEYLRQEMNPNFRMTDPFNPVHIMSFSGARGNISR

SwissProt top hits

e value

%identity

Alignment

A0A325 DNA-directed RNA polymerase subunit beta''

2.4e-75

93.84

Show/hide

Query:  MEVLMAERADLVFHNKVIDGTAIKRLISRFLDHFGMAYTSHILDQIKTLGFQQATATSISLGIDDLLTIPSKGWLVQDAEQQSLILEKHHHYGNVHAVEK
        MEVLMAERA+LVFHNK IDGTA+KRLISR +DHFGMAYTSHILDQ+KTLGF+QATATSISLGIDDLLTIPSKGWLVQDAEQQSLILEKHHHYGNVHAVEK
Subjt:  MEVLMAERADLVFHNKVIDGTAIKRLISRFLDHFGMAYTSHILDQIKTLGFQQATATSISLGIDDLLTIPSKGWLVQDAEQQSLILEKHHHYGNVHAVEK

Query:  LRQSIEIWYATSEYLRQEMNPNFRMTDPFNPVHIMSFSGARGNISR
        LRQSIEIWYATSEYLRQEMNPNFRMTDPFNPVHIMSFSGARGN+S+
Subjt:  LRQSIEIWYATSEYLRQEMNPNFRMTDPFNPVHIMSFSGARGNISR

Q33C48 DNA-directed RNA polymerase subunit beta''

1.4e-75

94.52

Show/hide

Query:  MEVLMAERADLVFHNKVIDGTAIKRLISRFLDHFGMAYTSHILDQIKTLGFQQATATSISLGIDDLLTIPSKGWLVQDAEQQSLILEKHHHYGNVHAVEK
        MEVLMAERA+LVFHNK IDGTA+KRLISR +DHFGMAYTSHILDQ+KTLGFQQATATSISLGIDDLLTIPSKGWLVQDAEQQSLILEKHHHYGNVHAVEK
Subjt:  MEVLMAERADLVFHNKVIDGTAIKRLISRFLDHFGMAYTSHILDQIKTLGFQQATATSISLGIDDLLTIPSKGWLVQDAEQQSLILEKHHHYGNVHAVEK

Query:  LRQSIEIWYATSEYLRQEMNPNFRMTDPFNPVHIMSFSGARGNISR
        LRQSIEIWYATSEYLRQEMNPNFRMTDPFNPVHIMSFSGARGN S+
Subjt:  LRQSIEIWYATSEYLRQEMNPNFRMTDPFNPVHIMSFSGARGNISR

Q49L08 DNA-directed RNA polymerase subunit beta''

8.1e-76

94.52

Show/hide

Query:  MEVLMAERADLVFHNKVIDGTAIKRLISRFLDHFGMAYTSHILDQIKTLGFQQATATSISLGIDDLLTIPSKGWLVQDAEQQSLILEKHHHYGNVHAVEK
        MEVLMAER +LVFHNKVIDGTAIKRLISR +DHFGMAYTSHILDQ+KTLGFQQATATSISLGIDDLLTIPSKGWLVQDAEQQSLILEKHHHYGNVHAVEK
Subjt:  MEVLMAERADLVFHNKVIDGTAIKRLISRFLDHFGMAYTSHILDQIKTLGFQQATATSISLGIDDLLTIPSKGWLVQDAEQQSLILEKHHHYGNVHAVEK

Query:  LRQSIEIWYATSEYLRQEMNPNFRMTDPFNPVHIMSFSGARGNISR
        LRQSIE+WYATSEYLRQEMNPNFRMTDPFNPVHIMSFSGARGN S+
Subjt:  LRQSIEIWYATSEYLRQEMNPNFRMTDPFNPVHIMSFSGARGNISR

Q4VZP3 DNA-directed RNA polymerase subunit beta''

7.4e-77

96.58

Show/hide

Query:  MEVLMAERADLVFHNKVIDGTAIKRLISRFLDHFGMAYTSHILDQIKTLGFQQATATSISLGIDDLLTIPSKGWLVQDAEQQSLILEKHHHYGNVHAVEK
        MEVLMAERADLVFHNKVIDGTAIKRLISR +DHFGMAYTSHILDQ+KTLGFQQATATSISLGIDDLLTIPSKGWLVQDAEQQSLILEKHHHYGNVHAVEK
Subjt:  MEVLMAERADLVFHNKVIDGTAIKRLISRFLDHFGMAYTSHILDQIKTLGFQQATATSISLGIDDLLTIPSKGWLVQDAEQQSLILEKHHHYGNVHAVEK

Query:  LRQSIEIWYATSEYLRQEMNPNFRMTDPFNPVHIMSFSGARGNISR
        LRQSIEIWYATSEYLRQEMNPNFRMTDPFNPVHIMSFSGARGN S+
Subjt:  LRQSIEIWYATSEYLRQEMNPNFRMTDPFNPVHIMSFSGARGNISR

Q9THV5 DNA-directed RNA polymerase subunit beta''

4.8e-76

95.21

Show/hide

Query:  MEVLMAERADLVFHNKVIDGTAIKRLISRFLDHFGMAYTSHILDQIKTLGFQQATATSISLGIDDLLTIPSKGWLVQDAEQQSLILEKHHHYGNVHAVEK
        MEVLMAERA+LVFHNKVIDGTAIKRLISR +DHFGMAYTSHILDQ+KTLGFQQATATSISLGIDDLLTIPSKGWLVQDAEQQSLILEKHHHYGNVHAVEK
Subjt:  MEVLMAERADLVFHNKVIDGTAIKRLISRFLDHFGMAYTSHILDQIKTLGFQQATATSISLGIDDLLTIPSKGWLVQDAEQQSLILEKHHHYGNVHAVEK

Query:  LRQSIEIWYATSEYLRQEMNPNFRMTDPFNPVHIMSFSGARGNISR
        LRQSIEIWYATSEYLRQEMNPNFRMTDPFNPVH+MSFSGARGN S+
Subjt:  LRQSIEIWYATSEYLRQEMNPNFRMTDPFNPVHIMSFSGARGNISR

Arabidopsis top hits

e value

%identity

Alignment

ATCG00170.1 DNA-directed RNA polymerase family protein

2.1e-74

94.37

Show/hide

Query:  MAERADLVFHNKVIDGTAIKRLISRFLDHFGMAYTSHILDQIKTLGFQQATATSISLGIDDLLTIPSKGWLVQDAEQQSLILEKHHHYGNVHAVEKLRQS
        MAERA+LVFHNKVIDGTAIKRLISR +DHFGMAYTSHILDQ+KTLGFQQATATSISLGIDDLLTIPSKGWLVQDAEQQS ILEKHHHYGNVHAVEKLRQS
Subjt:  MAERADLVFHNKVIDGTAIKRLISRFLDHFGMAYTSHILDQIKTLGFQQATATSISLGIDDLLTIPSKGWLVQDAEQQSLILEKHHHYGNVHAVEKLRQS

Query:  IEIWYATSEYLRQEMNPNFRMTDPFNPVHIMSFSGARGNISR
        IEIWYATSEYLRQEMNPNFRMTDPFNPVH+MSFSGARGN S+
Subjt:  IEIWYATSEYLRQEMNPNFRMTDPFNPVHIMSFSGARGNISR

Sequences

Show/hide sequences

CDS sequence

Show/hide CDS sequence

ATGGGACCTTTCAATTCTCTCCTATGCACCGATCTAGGATTCCAAAACCTAATAAACCGAGTGAGAAACGACCTATTACACAACCCCACTCAGCGTAATATGGAGGTACT
TATGGCGGAACGGGCCGATCTGGTCTTTCACAATAAAGTGATAGATGGAACTGCCATTAAACGACTTATTAGCAGATTTCTCGATCACTTCGGAATGGCATATACATCAC
ACATCCTGGATCAAATAAAGACTCTGGGGTTCCAGCAGGCCACTGCTACATCCATTTCATTAGGAATTGATGATCTTTTAACAATACCTTCTAAGGGATGGCTAGTCCAA
GATGCTGAACAACAAAGTTTGATTTTGGAAAAACACCATCATTATGGAAACGTACACGCAGTAGAAAAATTACGCCAGTCCATTGAGATATGGTATGCTACAAGTGAATA
TTTGCGACAAGAAATGAATCCTAATTTTAGGATGACTGACCCTTTTAATCCAGTCCATATAATGTCTTTTTCGGGAGCTCGAGGAAATATCTCAAGGAGCAGTCTTGCCC
AACGGCGTTACAGGACGTCGACATTGGTCAATGAGGAGATTAGGCGGCAGTTGAAAGAGCAGCTCGAAAAGGGTCATGGTTGGCCCAGTACATCCTCTTGTGCCTTGCCC
CTATCTCTAAAGGGTCTTGGTGCCGAAGAAGGCTCTAATTACACCACTTCGCTGGAAGAACGGTTTGGTATAATCGCCAGGATTTCAATCAAGATGAAATCG

mRNA sequence

Show/hide mRNA sequence

Protein sequence

Show/hide protein sequence

MGPFNSLLCTDLGFQNLINRVRNDLLHNPTQRNMEVLMAERADLVFHNKVIDGTAIKRLISRFLDHFGMAYTSHILDQIKTLGFQQATATSISLGIDDLLTIPSKGWLVQ
DAEQQSLILEKHHHYGNVHAVEKLRQSIEIWYATSEYLRQEMNPNFRMTDPFNPVHIMSFSGARGNISRSSLAQRRYRTSTLVNEEIRRQLKEQLEKGHGWPSTSSCALP
LSLKGLGAEEGSNYTTSLEERFGIIARISIKMKS

Sgr016107 (gene) of Monk fruit (Qingpiguo) v1 genome