CuGenDBv2

Gene ID	Sgr016470
Organism	Siraitia grosvenorii cv. Qingpiguo (Monk fruit (Qingpiguo) v1)
Description	DNA-directed RNA polymerase III subunit RPC9
Genome location	tig00152936:277151..279077
RNA-Seq Expression	Sgr016470
Synteny	Sgr016470
Gene Ontology terms	GO:0006384 - transcription initiation from RNA polymerase III promoter (biological process) GO:0005666 - RNA polymerase III complex (cellular component) GO:0000166 - nucleotide binding (molecular function)
InterPro domains	IPR005574 - RNA polymerase subunit RPB4/RPC9 IPR006590 - RNA polymerase Rpb4/RPC9, core IPR010997 - HRDC-like superfamily IPR038324 - Rpb4/RPC9 superfamily IPR038846 - DNA-directed RNA polymerase III subunit RPC9

Homology

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GenBank top hits

e value

%identity

Alignment

XP_022138348.1 uncharacterized protein LOC111009544 [Momordica charantia]

3.1e-50

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Query:  LEANAGPLTNFEVLDFLRSKGAAKDPTRVLANVAPPEYK---------------RTIIEFVDKSKKYDLAKAEILNIINLRPITPVEIFPIIEDSDVRMG
        LEANAGPLTNFEVLDFLRSKGAAKDPTRVLA V P EYK                +IIEFVDKSKKYDLAKAEILNIINLRP TPVEIFPIIEDSDVRMG
Subjt:  LEANAGPLTNFEVLDFLRSKGAAKDPTRVLANVAPPEYK---------------RTIIEFVDKSKKYDLAKAEILNIINLRPITPVEIFPIIEDSDVRMG

Query:  DDGIQELTEMVEQVLPPPQTQPTSEVAPKEEGKGAKAMEEEEGVGDVEGEAADEEPIETT
        DDGIQELTEMVE V PPPQTQPT +VAPK EGK  +AM E+EG     GE  D EP+ETT
Subjt:  DDGIQELTEMVEQVLPPPQTQPTSEVAPKEEGKGAKAMEEEEGVGDVEGEAADEEPIETT

XP_022958741.1 uncharacterized protein LOC111459926 [Cucurbita moschata]

8.4e-48

71.88

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Query:  LEANAGPLTNFEVLDFLRSKGAAKDPTRVLANVAPPEYK---------------RTIIEFVDKSKKYDLAKAEILNIINLRPITPVEIFPIIEDSDVRMG
        LEANAG LTNFEVLDFLRSKGAAKDPTRVLA VAP EYK                 IIEFVDKSKKYDLAKAE+LNI+NLRPITPVEIFPIIEDSDVRMG
Subjt:  LEANAGPLTNFEVLDFLRSKGAAKDPTRVLANVAPPEYK---------------RTIIEFVDKSKKYDLAKAEILNIINLRPITPVEIFPIIEDSDVRMG

Query:  DDGIQELTEMVEQVLPPPQTQPTSEVAPKEEGKGAKAMEEEEGVGDVEGEAADEEPIETT
        DDGIQELTEMVEQV P PQT+PTSE  P  EGK A+ M E+E + D     A +EP+ETT
Subjt:  DDGIQELTEMVEQVLPPPQTQPTSEVAPKEEGKGAKAMEEEEGVGDVEGEAADEEPIETT

XP_023000556.1 DNA-directed RNA polymerase III subunit RPC9-like [Cucurbita maxima]

9.3e-47

73.12

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Query:  LEANAGPLTNFEVLDFLRSKGAAKDPTRVLANVAPPEYK---------------RTIIEFVDKSKKYDLAKAEILNIINLRPITPVEIFPIIEDSDVRMG
        LEANAGPLTNFEVLDFLRSKGAAKDPTRVLA VAP EYK                 IIEFVDKSKKYDLAKAEILNI+NLRPITPVEIFPIIE+SDVRMG
Subjt:  LEANAGPLTNFEVLDFLRSKGAAKDPTRVLANVAPPEYK---------------RTIIEFVDKSKKYDLAKAEILNIINLRPITPVEIFPIIEDSDVRMG

Query:  DDGIQELTEMVEQVLPPPQTQPTSEVAPKEEGKGAKAMEEEEGVGDVEGEAADEEPIETT
        DDGIQELTEMVEQV P PQ+  TSEVAP +E   A+AME+EEGVG  E     EE + TT
Subjt:  DDGIQELTEMVEQVLPPPQTQPTSEVAPKEEGKGAKAMEEEEGVGDVEGEAADEEPIETT

XP_023006759.1 uncharacterized protein LOC111499396 [Cucurbita maxima]

6.4e-48

72.5

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Query:  LEANAGPLTNFEVLDFLRSKGAAKDPTRVLANVAPPEYK---------------RTIIEFVDKSKKYDLAKAEILNIINLRPITPVEIFPIIEDSDVRMG
        LEANAG LTNFEVLDFLRSKGAAKDPTRVLA VAP EYK                 IIEFVDKSKKYDLAKAE+LNI+NLRPITPVEIFPIIEDSDVRMG
Subjt:  LEANAGPLTNFEVLDFLRSKGAAKDPTRVLANVAPPEYK---------------RTIIEFVDKSKKYDLAKAEILNIINLRPITPVEIFPIIEDSDVRMG

Query:  DDGIQELTEMVEQVLPPPQTQPTSEVAPKEEGKGAKAMEEEEGVGDVEGEAADEEPIETT
        DDGIQELTEMVEQV P PQT+PTSEVAP  EGK A+ M E+  + D     A +EP+ETT
Subjt:  DDGIQELTEMVEQVLPPPQTQPTSEVAPKEEGKGAKAMEEEEGVGDVEGEAADEEPIETT

XP_023548749.1 uncharacterized protein LOC111807313 [Cucurbita pepo subsp. pepo]

2.9e-48

72.5

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Query:  LEANAGPLTNFEVLDFLRSKGAAKDPTRVLANVAPPEYK---------------RTIIEFVDKSKKYDLAKAEILNIINLRPITPVEIFPIIEDSDVRMG
        LEANAG LTNFEVLDFLRSKGAAKDPTRVLA VAP EYK                 IIEFVDKSKKYDLAKAE+LNI+NLRPITPVEIFPIIEDSDVRMG
Subjt:  LEANAGPLTNFEVLDFLRSKGAAKDPTRVLANVAPPEYK---------------RTIIEFVDKSKKYDLAKAEILNIINLRPITPVEIFPIIEDSDVRMG

Query:  DDGIQELTEMVEQVLPPPQTQPTSEVAPKEEGKGAKAMEEEEGVGDVEGEAADEEPIETT
        DDGIQELTEMVEQV P PQT+PTSE AP  EGK A+ M E+E + D     A +EP+ETT
Subjt:  DDGIQELTEMVEQVLPPPQTQPTSEVAPKEEGKGAKAMEEEEGVGDVEGEAADEEPIETT

TrEMBL top hits

e value

%identity

Alignment

A0A6J1CCS4 DNA-directed RNA polymerase III subunit RPC9

1.5e-50

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Query:  LEANAGPLTNFEVLDFLRSKGAAKDPTRVLANVAPPEYK---------------RTIIEFVDKSKKYDLAKAEILNIINLRPITPVEIFPIIEDSDVRMG
        LEANAGPLTNFEVLDFLRSKGAAKDPTRVLA V P EYK                +IIEFVDKSKKYDLAKAEILNIINLRP TPVEIFPIIEDSDVRMG
Subjt:  LEANAGPLTNFEVLDFLRSKGAAKDPTRVLANVAPPEYK---------------RTIIEFVDKSKKYDLAKAEILNIINLRPITPVEIFPIIEDSDVRMG

Query:  DDGIQELTEMVEQVLPPPQTQPTSEVAPKEEGKGAKAMEEEEGVGDVEGEAADEEPIETT
        DDGIQELTEMVE V PPPQTQPT +VAPK EGK  +AM E+EG     GE  D EP+ETT
Subjt:  DDGIQELTEMVEQVLPPPQTQPTSEVAPKEEGKGAKAMEEEEGVGDVEGEAADEEPIETT

A0A6J1EQC1 DNA-directed RNA polymerase III subunit RPC9

2.2e-46

73.12

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Query:  LEANAGPLTNFEVLDFLRSKGAAKDPTRVLANVAPPEYK---------------RTIIEFVDKSKKYDLAKAEILNIINLRPITPVEIFPIIEDSDVRMG
        LEANAGPLTNFEVLDFLRSKGAAKDPTRVLA VAP EYK                 IIEFVDKSKKYDLAKAEILNI+NLRPITPVEIFPIIE+SDVRMG
Subjt:  LEANAGPLTNFEVLDFLRSKGAAKDPTRVLANVAPPEYK---------------RTIIEFVDKSKKYDLAKAEILNIINLRPITPVEIFPIIEDSDVRMG

Query:  DDGIQELTEMVEQVLPPPQTQPTSEVAPKEEGKGAKAMEEEEGVGDVEGEAADEEPIETT
        DDGIQELT+MVEQV   P +Q TS VAPK E K A+AME+EEGVG      ADEE + TT
Subjt:  DDGIQELTEMVEQVLPPPQTQPTSEVAPKEEGKGAKAMEEEEGVGDVEGEAADEEPIETT

A0A6J1H2X6 DNA-directed RNA polymerase III subunit RPC9

4.1e-48

71.88

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Query:  LEANAGPLTNFEVLDFLRSKGAAKDPTRVLANVAPPEYK---------------RTIIEFVDKSKKYDLAKAEILNIINLRPITPVEIFPIIEDSDVRMG
        LEANAG LTNFEVLDFLRSKGAAKDPTRVLA VAP EYK                 IIEFVDKSKKYDLAKAE+LNI+NLRPITPVEIFPIIEDSDVRMG
Subjt:  LEANAGPLTNFEVLDFLRSKGAAKDPTRVLANVAPPEYK---------------RTIIEFVDKSKKYDLAKAEILNIINLRPITPVEIFPIIEDSDVRMG

Query:  DDGIQELTEMVEQVLPPPQTQPTSEVAPKEEGKGAKAMEEEEGVGDVEGEAADEEPIETT
        DDGIQELTEMVEQV P PQT+PTSE  P  EGK A+ M E+E + D     A +EP+ETT
Subjt:  DDGIQELTEMVEQVLPPPQTQPTSEVAPKEEGKGAKAMEEEEGVGDVEGEAADEEPIETT

A0A6J1KG58 DNA-directed RNA polymerase III subunit RPC9

4.5e-47

73.12

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Query:  LEANAGPLTNFEVLDFLRSKGAAKDPTRVLANVAPPEYK---------------RTIIEFVDKSKKYDLAKAEILNIINLRPITPVEIFPIIEDSDVRMG
        LEANAGPLTNFEVLDFLRSKGAAKDPTRVLA VAP EYK                 IIEFVDKSKKYDLAKAEILNI+NLRPITPVEIFPIIE+SDVRMG
Subjt:  LEANAGPLTNFEVLDFLRSKGAAKDPTRVLANVAPPEYK---------------RTIIEFVDKSKKYDLAKAEILNIINLRPITPVEIFPIIEDSDVRMG

Query:  DDGIQELTEMVEQVLPPPQTQPTSEVAPKEEGKGAKAMEEEEGVGDVEGEAADEEPIETT
        DDGIQELTEMVEQV P PQ+  TSEVAP +E   A+AME+EEGVG  E     EE + TT
Subjt:  DDGIQELTEMVEQVLPPPQTQPTSEVAPKEEGKGAKAMEEEEGVGDVEGEAADEEPIETT

A0A6J1L324 DNA-directed RNA polymerase III subunit RPC9

3.1e-48

72.5

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Query:  LEANAGPLTNFEVLDFLRSKGAAKDPTRVLANVAPPEYK---------------RTIIEFVDKSKKYDLAKAEILNIINLRPITPVEIFPIIEDSDVRMG
        LEANAG LTNFEVLDFLRSKGAAKDPTRVLA VAP EYK                 IIEFVDKSKKYDLAKAE+LNI+NLRPITPVEIFPIIEDSDVRMG
Subjt:  LEANAGPLTNFEVLDFLRSKGAAKDPTRVLANVAPPEYK---------------RTIIEFVDKSKKYDLAKAEILNIINLRPITPVEIFPIIEDSDVRMG

Query:  DDGIQELTEMVEQVLPPPQTQPTSEVAPKEEGKGAKAMEEEEGVGDVEGEAADEEPIETT
        DDGIQELTEMVEQV P PQT+PTSEVAP  EGK A+ M E+  + D     A +EP+ETT
Subjt:  DDGIQELTEMVEQVLPPPQTQPTSEVAPKEEGKGAKAMEEEEGVGDVEGEAADEEPIETT

SwissProt top hits

e value

%identity

Alignment

O35427 DNA-directed RNA polymerase III subunit RPC9

4.5e-04

31.36

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Query:  NFEVLDFLRSKGAAKDPTRVLANVAPPEYKRTIIEFVDKSKKYDLAKAEILNIINLRPITPVEIFPIIEDSDVRMGDDGIQELTEMVEQVLPPPQTQPTS
        N   + +   K  +K P R   N +P      + EF+   K + L KAE L ++N RP+T VEI  ++E+S+ R+ ++ I+ L   V  +LP       S
Subjt:  NFEVLDFLRSKGAAKDPTRVLANVAPPEYKRTIIEFVDKSKKYDLAKAEILNIINLRPITPVEIFPIIEDSDVRMGDDGIQELTEMVEQVLPPPQTQPTS

Query:  EVAPKEEGKGAKAMEEEE
        +    +      AMEEEE
Subjt:  EVAPKEEGKGAKAMEEEE

O75575 DNA-directed RNA polymerase III subunit RPC9

3.5e-04

32.2

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Query:  NFEVLDFLRSKGAAKDPTRVLANVAPPEYKRTIIEFVDKSKKYDLAKAEILNIINLRPITPVEIFPIIEDSDVRMGDDGIQELTEMVEQVLPPPQTQPTS
        N   + +   K  +K P R  +    PE  R   EF+   K + L KAE L ++N RP+T VEI  ++E+S+ R+ ++ I+ L   V  +LP    +P +
Subjt:  NFEVLDFLRSKGAAKDPTRVLANVAPPEYKRTIIEFVDKSKKYDLAKAEILNIINLRPITPVEIFPIIEDSDVRMGDDGIQELTEMVEQVLPPPQTQPTS

Query:  EVAPKEEGKGAKAMEEEE
        E   K+      AM+EE+
Subjt:  EVAPKEEGKGAKAMEEEE

Arabidopsis top hits

e value

%identity

Alignment

AT3G28956.1 RNA polymerase II, Rpb4, core protein

1.3e-19

48.25

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Query:  LEANAGPLTNFEVLDFLRSKGAAKDPTRVLANVAPPEYK---------------RTIIEFVDKSKKYDLAKAEILNIINLRPITPVEIFPIIEDSDVRMG
        ++ANAG LTNFE+LDFL S+GA+KD TRV+A +A  EYK                ++ +  DK K + LAKAEILNIINL P + VE+ PIIE+ D R  
Subjt:  LEANAGPLTNFEVLDFLRSKGAAKDPTRVLANVAPPEYK---------------RTIIEFVDKSKKYDLAKAEILNIINLRPITPVEIFPIIEDSDVRMG

Query:  D-DGIQELTEMVEQVLPPPQTQPTSEVAPKEEGKGAKAMEEEE
        D DGI EL   V+ +LPP    PT+E +PK+        EEEE
Subjt:  D-DGIQELTEMVEQVLPPPQTQPTSEVAPKEEGKGAKAMEEEE

AT5G62950.1 RNA polymerase II, Rpb4, core protein

2.9e-22

50.76

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Query:  LEANAGPLTNFEVLDFLRSKGAAKDPTRVLANVAPPEYK---------------RTIIEFVDKSKKYDLAKAEILNIINLRPITPVEIFPIIEDSDVRMG
        ++ANAG LTNFEVLDFL S+GA+KD TRV+A +A  EYK                +I +F DK K + LAKAEILNIINLRP + VE+ PIIE+ D R  
Subjt:  LEANAGPLTNFEVLDFLRSKGAAKDPTRVLANVAPPEYK---------------RTIIEFVDKSKKYDLAKAEILNIINLRPITPVEIFPIIEDSDVRMG

Query:  D-DGIQELTEMVEQVLPPPQTQPTSEVAPKEE
        D DGI EL   V+ +LPP  T  + +   +EE
Subjt:  D-DGIQELTEMVEQVLPPPQTQPTSEVAPKEE

AT5G62950.2 RNA polymerase II, Rpb4, core protein

5.7e-18

54.44

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Query:  LEANAGPLTNFEVLDFLRSKGAAKDPTRVLANVAPPEYK---------------RTIIEFVDKSKKYDLAKAEILNIINLRPITPVEIFP
        ++ANAG LTNFEVLDFL S+GA+KD TRV+A +A  EYK                +I +F DK K + LAKAEILNIINLRP + VE+ P
Subjt:  LEANAGPLTNFEVLDFLRSKGAAKDPTRVLANVAPPEYK---------------RTIIEFVDKSKKYDLAKAEILNIINLRPITPVEIFP

AT5G62950.3 RNA polymerase II, Rpb4, core protein

2.9e-22

50.76

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Query:  LEANAGPLTNFEVLDFLRSKGAAKDPTRVLANVAPPEYK---------------RTIIEFVDKSKKYDLAKAEILNIINLRPITPVEIFPIIEDSDVRMG
        ++ANAG LTNFEVLDFL S+GA+KD TRV+A +A  EYK                +I +F DK K + LAKAEILNIINLRP + VE+ PIIE+ D R  
Subjt:  LEANAGPLTNFEVLDFLRSKGAAKDPTRVLANVAPPEYK---------------RTIIEFVDKSKKYDLAKAEILNIINLRPITPVEIFPIIEDSDVRMG

Query:  D-DGIQELTEMVEQVLPPPQTQPTSEVAPKEE
        D DGI EL   V+ +LPP  T  + +   +EE
Subjt:  D-DGIQELTEMVEQVLPPPQTQPTSEVAPKEE

Sequences

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CDS sequence

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ATGGGGATCGACGAAGGGTTTTTGTCGCCGTCGTCGTGGGTTTCTGATTCCGGCCAAATCTTTAAACTTCAACTCGATGAAAATGTATCCGGAACTATTGTTTGCAGATT
AGAGGCCAACGCAGGCCCTCTTACAAATTTCGAGGTGCTCGACTTTCTACGATCAAAGGGGGCAGCTAAGGATCCCACTAGGGTTCTTGCGAACGTGGCACCACCTGAGT
ACAAGAGAACCATTATTGAGTTTGTTGACAAGTCCAAAAAGTATGATCTCGCGAAAGCTGAAATTCTCAATATCATCAACTTGCGGCCGATTACCCCGGTTGAGATATTT
CCGATTATAGAGGACAGTGATGTTCGCATGGGAGATGATGGAATTCAAGAGCTTACGGAGATGGTGGAACAGGTGTTGCCTCCACCTCAAACTCAACCAACATCCGAAGT
AGCTCCGAAGGAGGAAGGTAAAGGGGCCAAAGCCATGGAGGAGGAGGAAGGAGTTGGGGATGTTGAAGGAGAAGCTGCCGATGAAGAACCCATAGAAACGACTTGA

mRNA sequence

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Protein sequence

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MGIDEGFLSPSSWVSDSGQIFKLQLDENVSGTIVCRLEANAGPLTNFEVLDFLRSKGAAKDPTRVLANVAPPEYKRTIIEFVDKSKKYDLAKAEILNIINLRPITPVEIF
PIIEDSDVRMGDDGIQELTEMVEQVLPPPQTQPTSEVAPKEEGKGAKAMEEEEGVGDVEGEAADEEPIETT

Sgr016470 (gene) of Monk fruit (Qingpiguo) v1 genome