| GenBank top hits | e value | %identity | Alignment |
|---|
| GAU51268.1 hypothetical protein TSUD_412550 [Trifolium subterraneum] | 1.7e-29 | 49.65 | Show/hide |
Query: MLNNVIKLCNLPMQSNDTLKFSEACQFDKSHALLFSPSTFHVAPPFELIHSDVWGPSPIDSIDCFKYYAHFLDDFNKPVWLYPLRRKSDTILPFQYFNAF
+L+ V+K CN+ + +D F EACQF K H L F PS+ HV P LIHSDVWGP+PI S FKYY HF+DDF++ W++PL++KSDTI F F
Subjt: MLNNVIKLCNLPMQSNDTLKFSEACQFDKSHALLFSPSTFHVAPPFELIHSDVWGPSPIDSIDCFKYYAHFLDDFNKPVWLYPLRRKSDTILPFQYFNAF
Query: IQTQFN--LKTIQIDGGGEYKPL----ISHNVQFNEEGFPYAS
+ QFN +K IQ DGGGEYK + I +QF PY S
Subjt: IQTQFN--LKTIQIDGGGEYKPL----ISHNVQFNEEGFPYAS
|
|
| KYP31892.1 Retrovirus-related Pol polyprotein from transposon TNT 1-94, partial [Cajanus cajan] | 6.3e-29 | 48.44 | Show/hide |
Query: LNNVIKLCNLPMQSNDTLKFSEACQFDKSHALLFSPSTFHVAPPFELIHSDVWGPSPIDSIDCFKYYAHFLDDFNKPVWLYPLRRKSDTILPFQYFNAFI
L+ V+K CN+ + +D F EACQ+ K H L F S+ H FEL+H+DVWGP+P+ S FKYY HFLDDF++ W+YPL+ KSDT F F
Subjt: LNNVIKLCNLPMQSNDTLKFSEACQFDKSHALLFSPSTFHVAPPFELIHSDVWGPSPIDSIDCFKYYAHFLDDFNKPVWLYPLRRKSDTILPFQYFNAFI
Query: QTQFN--LKTIQIDGGGEYKPLISHNVQ
+ FN +KTIQ DGGGEYK + +H ++
Subjt: QTQFN--LKTIQIDGGGEYKPLISHNVQ
|
|
| MCH94186.1 retrovirus-related pol polyprotein from transposon tnt 1-94 [Trifolium medium] | 6.3e-29 | 45.45 | Show/hide |
Query: MLNNVIKLCNLPMQSNDTLKFSEACQFDKSHALLFSPSTFHVAPPFELIHSDVWGPSPIDSIDCFKYYAHFLDDFNKPVWLYPLRRKSDTILPFQYFNAF
+L+ V+K CN+ + +D F EACQ+ K H L F S+ H P EL+H+DVWGP+PI + FKYY HF+DDF++ W+YPL++KS+T+ F F
Subjt: MLNNVIKLCNLPMQSNDTLKFSEACQFDKSHALLFSPSTFHVAPPFELIHSDVWGPSPIDSIDCFKYYAHFLDDFNKPVWLYPLRRKSDTILPFQYFNAF
Query: IQTQFN--LKTIQIDGGGEYKPL----ISHNVQFNEEGFPYAS
+ QFN +K IQ DGGGEYKP+ + +QF PY S
Subjt: IQTQFN--LKTIQIDGGGEYKPL----ISHNVQFNEEGFPYAS
|
|
| PNX78574.1 retrovirus-related Pol polyprotein from transposon TNT 1-94 [Trifolium pratense] | 3.3e-30 | 52.03 | Show/hide |
Query: MLNNVIKLCNLPMQSNDTLKFSEACQFDKSHALLFSPSTFHVAPPFELIHSDVWGPSPIDSIDCFKYYAHFLDDFNKPVWLYPLRRKSDTILPFQYFNAF
+L+ V+K+CN+ +D KF EACQ KSH L F S+ H ELIH+DVWGP+PI+SI FKYY HF+DD ++ W+YPL++KSDTI F F
Subjt: MLNNVIKLCNLPMQSNDTLKFSEACQFDKSHALLFSPSTFHVAPPFELIHSDVWGPSPIDSIDCFKYYAHFLDDFNKPVWLYPLRRKSDTILPFQYFNAF
Query: IQTQFN--LKTIQIDGGGEYKPL
++ QFN +K IQ DGGGE+KP+
Subjt: IQTQFN--LKTIQIDGGGEYKPL
|
|
| PNY02796.1 copia protein (gag-int-pol protein), partial [Trifolium pratense] | 1.7e-29 | 47.55 | Show/hide |
Query: MLNNVIKLCNLPMQSNDTLKFSEACQFDKSHALLFSPSTFHVAPPFELIHSDVWGPSPIDSIDCFKYYAHFLDDFNKPVWLYPLRRKSDTILPFQYFNAF
+L+ V+K CN+ S+D KF EACQF K H L F S H P +LIH+DVWGP+PI S FKYY HF+DDF++ W+YPL++KS+TI F F
Subjt: MLNNVIKLCNLPMQSNDTLKFSEACQFDKSHALLFSPSTFHVAPPFELIHSDVWGPSPIDSIDCFKYYAHFLDDFNKPVWLYPLRRKSDTILPFQYFNAF
Query: IQTQFN--LKTIQIDGGGEYKPL----ISHNVQFNEEGFPYAS
++ QFN +K +Q DGGGEYK + + +QF PY S
Subjt: IQTQFN--LKTIQIDGGGEYKPL----ISHNVQFNEEGFPYAS
|
|
| TrEMBL top hits | e value | %identity | Alignment |
|---|
| A0A151QNR2 Retrovirus-related Pol polyprotein from transposon TNT 1-94 (Fragment) | 3.0e-29 | 48.44 | Show/hide |
Query: LNNVIKLCNLPMQSNDTLKFSEACQFDKSHALLFSPSTFHVAPPFELIHSDVWGPSPIDSIDCFKYYAHFLDDFNKPVWLYPLRRKSDTILPFQYFNAFI
L+ V+K CN+ + +D F EACQ+ K H L F S+ H FEL+H+DVWGP+P+ S FKYY HFLDDF++ W+YPL+ KSDT F F
Subjt: LNNVIKLCNLPMQSNDTLKFSEACQFDKSHALLFSPSTFHVAPPFELIHSDVWGPSPIDSIDCFKYYAHFLDDFNKPVWLYPLRRKSDTILPFQYFNAFI
Query: QTQFN--LKTIQIDGGGEYKPLISHNVQ
+ FN +KTIQ DGGGEYK + +H ++
Subjt: QTQFN--LKTIQIDGGGEYKPLISHNVQ
|
|
| A0A2K3LJ49 Retrovirus-related Pol polyprotein from transposon TNT 1-94 | 1.6e-30 | 52.03 | Show/hide |
Query: MLNNVIKLCNLPMQSNDTLKFSEACQFDKSHALLFSPSTFHVAPPFELIHSDVWGPSPIDSIDCFKYYAHFLDDFNKPVWLYPLRRKSDTILPFQYFNAF
+L+ V+K+CN+ +D KF EACQ KSH L F S+ H ELIH+DVWGP+PI+SI FKYY HF+DD ++ W+YPL++KSDTI F F
Subjt: MLNNVIKLCNLPMQSNDTLKFSEACQFDKSHALLFSPSTFHVAPPFELIHSDVWGPSPIDSIDCFKYYAHFLDDFNKPVWLYPLRRKSDTILPFQYFNAF
Query: IQTQFN--LKTIQIDGGGEYKPL
++ QFN +K IQ DGGGE+KP+
Subjt: IQTQFN--LKTIQIDGGGEYKPL
|
|
| A0A2K3NIC3 Copia protein (Gag-int-pol protein) (Fragment) | 8.0e-30 | 47.55 | Show/hide |
Query: MLNNVIKLCNLPMQSNDTLKFSEACQFDKSHALLFSPSTFHVAPPFELIHSDVWGPSPIDSIDCFKYYAHFLDDFNKPVWLYPLRRKSDTILPFQYFNAF
+L+ V+K CN+ S+D KF EACQF K H L F S H P +LIH+DVWGP+PI S FKYY HF+DDF++ W+YPL++KS+TI F F
Subjt: MLNNVIKLCNLPMQSNDTLKFSEACQFDKSHALLFSPSTFHVAPPFELIHSDVWGPSPIDSIDCFKYYAHFLDDFNKPVWLYPLRRKSDTILPFQYFNAF
Query: IQTQFN--LKTIQIDGGGEYKPL----ISHNVQFNEEGFPYAS
++ QFN +K +Q DGGGEYK + + +QF PY S
Subjt: IQTQFN--LKTIQIDGGGEYKPL----ISHNVQFNEEGFPYAS
|
|
| A0A2Z6P4D5 Integrase catalytic domain-containing protein | 8.0e-30 | 49.65 | Show/hide |
Query: MLNNVIKLCNLPMQSNDTLKFSEACQFDKSHALLFSPSTFHVAPPFELIHSDVWGPSPIDSIDCFKYYAHFLDDFNKPVWLYPLRRKSDTILPFQYFNAF
+L+ V+K CN+ + +D F EACQF K H L F PS+ HV P LIHSDVWGP+PI S FKYY HF+DDF++ W++PL++KSDTI F F
Subjt: MLNNVIKLCNLPMQSNDTLKFSEACQFDKSHALLFSPSTFHVAPPFELIHSDVWGPSPIDSIDCFKYYAHFLDDFNKPVWLYPLRRKSDTILPFQYFNAF
Query: IQTQFN--LKTIQIDGGGEYKPL----ISHNVQFNEEGFPYAS
+ QFN +K IQ DGGGEYK + I +QF PY S
Subjt: IQTQFN--LKTIQIDGGGEYKPL----ISHNVQFNEEGFPYAS
|
|
| A0A392N2Z1 Retrovirus-related pol polyprotein from transposon tnt 1-94 (Fragment) | 3.0e-29 | 45.45 | Show/hide |
Query: MLNNVIKLCNLPMQSNDTLKFSEACQFDKSHALLFSPSTFHVAPPFELIHSDVWGPSPIDSIDCFKYYAHFLDDFNKPVWLYPLRRKSDTILPFQYFNAF
+L+ V+K CN+ + +D F EACQ+ K H L F S+ H P EL+H+DVWGP+PI + FKYY HF+DDF++ W+YPL++KS+T+ F F
Subjt: MLNNVIKLCNLPMQSNDTLKFSEACQFDKSHALLFSPSTFHVAPPFELIHSDVWGPSPIDSIDCFKYYAHFLDDFNKPVWLYPLRRKSDTILPFQYFNAF
Query: IQTQFN--LKTIQIDGGGEYKPL----ISHNVQFNEEGFPYAS
+ QFN +K IQ DGGGEYKP+ + +QF PY S
Subjt: IQTQFN--LKTIQIDGGGEYKPL----ISHNVQFNEEGFPYAS
|
|
| SwissProt top hits | e value | %identity | Alignment |
|---|
| P04146 Copia protein | 1.6e-06 | 37.5 | Show/hide |
Query: HVAPPFELIHSDVWGPSPIDSIDCFKYYAHFLDDFNKPVWLYPLRRKSDTILPFQYFNAFIQTQFNLKTI--QIDGGGEY
H+ P ++HSDV GP ++D Y+ F+D F Y ++ KSD FQ F A + FNLK + ID G EY
Subjt: HVAPPFELIHSDVWGPSPIDSIDCFKYYAHFLDDFNKPVWLYPLRRKSDTILPFQYFNAFIQTQFNLKTI--QIDGGGEY
|
|
| P0C2J0 Transposon Ty1-PR2 Gag-Pol polyprotein | 4.5e-06 | 34.78 | Show/hide |
Query: PFELIHSDVWGPSPIDSIDCFKYYAHFLDDFNKPVWLYPLR-RKSDTILP-FQYFNAFIQTQF--NLKTIQIDGGGEYKPLISHNVQFNEEG
PF+ +H+D++GP Y+ F D+ K W+YPL R+ D+IL F AFI+ QF ++ IQ+D G EY H + G
Subjt: PFELIHSDVWGPSPIDSIDCFKYYAHFLDDFNKPVWLYPLR-RKSDTILP-FQYFNAFIQTQF--NLKTIQIDGGGEYKPLISHNVQFNEEG
|
|
| P10978 Retrovirus-related Pol polyprotein from transposon TNT 1-94 | 3.3e-12 | 35.92 | Show/hide |
Query: TLKFSEACQFDKSHALLFSPSTFHVAPPFELIHSDVWGPSPIDSIDCFKYYAHFLDDFNKPVWLYPLRRKSDTILPFQYFNAFI--QTQFNLKTIQIDGG
T+K + C F K H + F S+ +L++SDV GP I+S+ KY+ F+DD ++ +W+Y L+ K FQ F+A + +T LK ++ D G
Subjt: TLKFSEACQFDKSHALLFSPSTFHVAPPFELIHSDVWGPSPIDSIDCFKYYAHFLDDFNKPVWLYPLRRKSDTILPFQYFNAFI--QTQFNLKTIQIDGG
Query: GEY
GEY
Subjt: GEY
|
|
| Q94HW2 Retrovirus-related Pol polyprotein from transposon RE1 | 2.3e-13 | 34.62 | Show/hide |
Query: MLNNVIKLCNLPMQSNDTLKFSEA--CQFDKSHALLFSPSTFHVAPPFELIHSDVWGPSPIDSIDCFKYYAHFLDDFNKPVWLYPLRRKSDTILPFQYFN
+LN+VI +L + N + KF C +KS+ + FS ST + P E I+SDVW SPI S D ++YY F+D F + WLYPL++KS F F
Subjt: MLNNVIKLCNLPMQSNDTLKFSEA--CQFDKSHALLFSPSTFHVAPPFELIHSDVWGPSPIDSIDCFKYYAHFLDDFNKPVWLYPLRRKSDTILPFQYFN
Query: AFIQTQFNLK--TIQIDGGGEYKPLISHNVQFNEEGFPYASGFGDSLPSSTTPPST
++ +F + T D GGE+ L + F++ G + T+PP T
Subjt: AFIQTQFNLK--TIQIDGGGEYKPLISHNVQFNEEGFPYASGFGDSLPSSTTPPST
|
|
| Q9ZT94 Retrovirus-related Pol polyprotein from transposon RE2 | 6.3e-16 | 40.98 | Show/hide |
Query: MLNNVIKLCNLPM--QSNDTLKFSEACQFDKSHALLFSPSTFHVAPPFELIHSDVWGPSPIDSIDCFKYYAHFLDDFNKPVWLYPLRRKSDTILPFQYFN
+LN+VI +LP+ S+ L S+ C +KSH + FS ST + P E I+SDVW SPI SID ++YY F+D F + WLYPL++KS F F
Subjt: MLNNVIKLCNLPM--QSNDTLKFSEACQFDKSHALLFSPSTFHVAPPFELIHSDVWGPSPIDSIDCFKYYAHFLDDFNKPVWLYPLRRKSDTILPFQYFN
Query: AFIQTQFNLK--TIQIDGGGEY
+ ++ +F + T+ D GGE+
Subjt: AFIQTQFNLK--TIQIDGGGEY
|
|
