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Sgr017932 (gene) of Monk fruit (Qingpiguo) v1 genome

Gene IDSgr017932
OrganismSiraitia grosvenorii cv. Qingpiguo (Monk fruit (Qingpiguo) v1)
DescriptionPoly(A)-specific ribonuclease
Genome locationtig00153057:627831..628145
RNA-Seq ExpressionSgr017932
SyntenySgr017932
Gene Ontology termsGO:0016070 - RNA metabolic process (biological process)
GO:0005622 - intracellular (cellular component)
GO:0030014 - CCR4-NOT complex (cellular component)
GO:0003676 - nucleic acid binding (molecular function)
GO:0004535 - poly(A)-specific ribonuclease activity (molecular function)
InterPro domainsIPR012337 - Ribonuclease H-like superfamily
IPR036397 - Ribonuclease H superfamily
IPR039637 - CCR4-NOT transcription complex subunit 7/8/Pop2


Homology Show/hide homology
GenBank top hitse value%identityAlignment
XP_022146113.1 putative CCR4-associated factor 1 homolog 8 [Momordica charantia]2.0e-2262.37Show/hide
Query:  MEMFAAKAQRLLGTVSDLKHMARHCESLLNGELGLERLAKLLGVSRTGTAHHAGSDSLLTASVYAKMKEKFEFSSEHFDGFLYGLRYRIRGPI
        ME FA   +R LG VSDLKHMA+ CE L +G+LGLE+LA+L+   R G  HHAGSDSLLTAS+YAKMK +FE  SE  DGFLYGLR ++   I
Subjt:  MEMFAAKAQRLLGTVSDLKHMARHCESLLNGELGLERLAKLLGVSRTGTAHHAGSDSLLTASVYAKMKEKFEFSSEHFDGFLYGLRYRIRGPI

XP_022154798.1 probable CCR4-associated factor 1 homolog 6 [Momordica charantia]1.5e-2564.71Show/hide
Query:  MEMFAAKAQRLLGTVSDLKHMARHCESLLNGELGLERLAKLLGVSRTGTAHHAGSDSLLTASVYAKMKEKFEFSSEHFDGFLYGLRYRIRG--PIVKIAK
        M  FAA AQ LLGTVSDLKHM R+C+ LL+G+LGL++LAKLL V R G AH AGSDSLLTA+VY KMK+ F+   E  +GFLYGL +RI+   PIVKI  
Subjt:  MEMFAAKAQRLLGTVSDLKHMARHCESLLNGELGLERLAKLLGVSRTGTAHHAGSDSLLTASVYAKMKEKFEFSSEHFDGFLYGLRYRIRG--PIVKIAK

Query:  PS
        PS
Subjt:  PS

XP_023511526.1 putative CCR4-associated factor 1 homolog 8 [Cucurbita pepo subsp. pepo]4.1e-2364.08Show/hide
Query:  MEMFAAKAQRLLGTVSDLKHMARHCESLLNGELGLERLAKLLGVSRTGTAHHAGSDSLLTASVYAKMKEKFEFSSEHFDGFLYGLRYRIRG---PIVKIA
        M MFA  A  +LGTV+DLKHMAR+  +LLNG LGL+RLAKLL V+RTGTAH AGSDSLLTA+VYAKMK   +   +  +GFLYGL Y I+G   PIV I 
Subjt:  MEMFAAKAQRLLGTVSDLKHMARHCESLLNGELGLERLAKLLGVSRTGTAHHAGSDSLLTASVYAKMKEKFEFSSEHFDGFLYGLRYRIRG---PIVKIA

Query:  KPS
         PS
Subjt:  KPS

XP_023511528.1 putative CCR4-associated factor 1 homolog 8 [Cucurbita pepo subsp. pepo]1.2e-2262.14Show/hide
Query:  MEMFAAKAQRLLGTVSDLKHMARHCESLLNGELGLERLAKLLGVSRTGTAHHAGSDSLLTASVYAKMKEKFEFSSEHFDGFLYGLRYRIRG---PIVKIA
        M MFA  A  +LGTV+DLKHMAR+  +LLNG LGL+RLAKLL V+RTGTAH AGSDSLLTA++YAKMK   +   +  +GFLYGL Y I+G   P+V I 
Subjt:  MEMFAAKAQRLLGTVSDLKHMARHCESLLNGELGLERLAKLLGVSRTGTAHHAGSDSLLTASVYAKMKEKFEFSSEHFDGFLYGLRYRIRG---PIVKIA

Query:  KPS
         PS
Subjt:  KPS

XP_038888808.1 probable CCR4-associated factor 1 homolog 6 [Benincasa hispida]5.4e-2362.75Show/hide
Query:  MEMFAAKAQRLLGTVSDLKHMARHCESLLNGELGLERLAKLLGVSRTGTAHHAGSDSLLTASVYAKMKEKFEFSSEHFDGFLYGLRYRIRG--PIVKIAK
        M  FA  AQRLLGTV+DLKHMAR+C+ LL+  LGL++LAKLLGV+R GTAH AGSDSLLTASVYAKMK  F+   +  +G LYGL + IR     V I  
Subjt:  MEMFAAKAQRLLGTVSDLKHMARHCESLLNGELGLERLAKLLGVSRTGTAHHAGSDSLLTASVYAKMKEKFEFSSEHFDGFLYGLRYRIRG--PIVKIAK

Query:  PS
        PS
Subjt:  PS

TrEMBL top hitse value%identityAlignment
A0A6J1CXP9 Poly(A)-specific ribonuclease9.9e-2362.37Show/hide
Query:  MEMFAAKAQRLLGTVSDLKHMARHCESLLNGELGLERLAKLLGVSRTGTAHHAGSDSLLTASVYAKMKEKFEFSSEHFDGFLYGLRYRIRGPI
        ME FA   +R LG VSDLKHMA+ CE L +G+LGLE+LA+L+   R G  HHAGSDSLLTAS+YAKMK +FE  SE  DGFLYGLR ++   I
Subjt:  MEMFAAKAQRLLGTVSDLKHMARHCESLLNGELGLERLAKLLGVSRTGTAHHAGSDSLLTASVYAKMKEKFEFSSEHFDGFLYGLRYRIRGPI

A0A6J1DIB1 putative CCR4-associated factor 1 homolog 82.9e-2257.84Show/hide
Query:  MEMFAAKAQRLLGTVSDLKHMARHCESLLNGELGLERLAKLLGVSRTGTAHHAGSDSLLTASVYAKMKEKFEFSSEHFDGFLYGLRYRIRG--PIVKIAK
        M  FAA AQ LLG +S+LKHMAR+C+ LL+G L L++ AKLL V R GTAH AG DSLLTAS+Y KMK+ F+   E  +GFLY L +RI+    I+KI  
Subjt:  MEMFAAKAQRLLGTVSDLKHMARHCESLLNGELGLERLAKLLGVSRTGTAHHAGSDSLLTASVYAKMKEKFEFSSEHFDGFLYGLRYRIRG--PIVKIAK

Query:  PS
        PS
Subjt:  PS

A0A6J1DLA5 Poly(A)-specific ribonuclease7.3e-2664.71Show/hide
Query:  MEMFAAKAQRLLGTVSDLKHMARHCESLLNGELGLERLAKLLGVSRTGTAHHAGSDSLLTASVYAKMKEKFEFSSEHFDGFLYGLRYRIRG--PIVKIAK
        M  FAA AQ LLGTVSDLKHM R+C+ LL+G+LGL++LAKLL V R G AH AGSDSLLTA+VY KMK+ F+   E  +GFLYGL +RI+   PIVKI  
Subjt:  MEMFAAKAQRLLGTVSDLKHMARHCESLLNGELGLERLAKLLGVSRTGTAHHAGSDSLLTASVYAKMKEKFEFSSEHFDGFLYGLRYRIRG--PIVKIAK

Query:  PS
        PS
Subjt:  PS

A0A6J1ESM7 Poly(A)-specific ribonuclease2.2e-2261.76Show/hide
Query:  MEMFAAKAQRLLGTVSDLKHMARHCESLLNGELGLERLAKLLGVSRTGTAHHAGSDSLLTASVYAKMKEKFEFSSEHFDGFLYGLRYRIRG--PIVKIAK
        M MFA  A  LLGTV+DLKHMAR+ + L NG LGL++LAKLL ++R GTAH AGSDSLLTASVYAKMK   +   +  +GFLYGL Y I+G  P V I  
Subjt:  MEMFAAKAQRLLGTVSDLKHMARHCESLLNGELGLERLAKLLGVSRTGTAHHAGSDSLLTASVYAKMKEKFEFSSEHFDGFLYGLRYRIRG--PIVKIAK

Query:  PS
        PS
Subjt:  PS

A0A6J1IIN1 Poly(A)-specific ribonuclease4.9e-2260.19Show/hide
Query:  MEMFAAKAQRLLGTVSDLKHMARHCESLLNGELGLERLAKLLGVSRTGTAHHAGSDSLLTASVYAKMKEKFEFSSEHFDGFLYGLRYRIRG--PIVKIAK
        M +FA  A  LLGTV+DLKHMAR+ + LLNG LGL++LAK+L V+R GTAH AGSDSLLTASVYAKM+   +   +  +GFLYGL Y I+G  P V I  
Subjt:  MEMFAAKAQRLLGTVSDLKHMARHCESLLNGELGLERLAKLLGVSRTGTAHHAGSDSLLTASVYAKMKEKFEFSSEHFDGFLYGLRYRIRG--PIVKIAK

Query:  PSL
        P L
Subjt:  PSL

SwissProt top hitse value%identityAlignment
Q9LEU4 Probable CCR4-associated factor 1 homolog 104.9e-1150.68Show/hide
Query:  TVSDLKHMARHCESLLNGELGLERLAKLLGVSRTGTAHHAGSDSLLTASVYAKMKEK-FEFSSEHFDGFLYGL
        TV D+KH+   C  L     GL RLA+L+GV R G  H AGSDSLLT   + K+KE+ F  S+E + G LYGL
Subjt:  TVSDLKHMARHCESLLNGELGLERLAKLLGVSRTGTAHHAGSDSLLTASVYAKMKEK-FEFSSEHFDGFLYGL

Q9LXM4 Putative CCR4-associated factor 1 homolog 81.1e-1052.86Show/hide
Query:  EMFAAKAQRLLGTVSDLKHMARHCESLLNGELGLERLAKLLGVSRTGTAHHAGSDSLLTASVYAKMKEKF
        E F+    R+LG+V DLK MA  CE  L+  LGLE LA   G++R GTAHHAGS++ LTA V+AK+   F
Subjt:  EMFAAKAQRLLGTVSDLKHMARHCESLLNGELGLERLAKLLGVSRTGTAHHAGSDSLLTASVYAKMKEKF

Q9SAI2 Probable CCR4-associated factor 1 homolog 64.1e-1049.32Show/hide
Query:  TVSDLKHMARHCESLLNGELGLERLAKLLGVSRTGTAHHAGSDSLLTASVYAKMKEKFEFSSEH-FDGFLYGL
        TV D+KH+ + C SL     GL +LA+LL V R G  H AGSDSLLT+  + K+KE F     H + G LYGL
Subjt:  TVSDLKHMARHCESLLNGELGLERLAKLLGVSRTGTAHHAGSDSLLTASVYAKMKEKFEFSSEH-FDGFLYGL

Q9SHJ0 Probable CCR4-associated factor 1 homolog 19.9e-1247.56Show/hide
Query:  FAAKAQRLLGTVSDLKHMARHCESLLNGELGLERLAKLLGVSRTGTAHHAGSDSLLTASVYAKMKEKFEFSSEHFDGFLYGL
        FA +  ++ G V D K MA  CE  L   LGL +LA+LL ++R G AHHAGSDSL+TA V+ K+K  +E  S    G +YG+
Subjt:  FAAKAQRLLGTVSDLKHMARHCESLLNGELGLERLAKLLGVSRTGTAHHAGSDSLLTASVYAKMKEKFEFSSEHFDGFLYGL

Q9SKZ2 Probable CCR4-associated factor 1 homolog 71.2e-0948.61Show/hide
Query:  VSDLKHMARHCESLLNGELGLERLAKLLGVSRTGTAHHAGSDSLLTASVYAKMKEKFEFSS-EHFDGFLYGL
        V D+KH+ + C SL     GL +LA+LL V R G  H AGSDSLLT+  + K++E F   S E + G LYGL
Subjt:  VSDLKHMARHCESLLNGELGLERLAKLLGVSRTGTAHHAGSDSLLTASVYAKMKEKFEFSS-EHFDGFLYGL

Arabidopsis top hitse value%identityAlignment
AT1G06450.1 Polynucleotidyl transferase, ribonuclease H-like superfamily protein7.0e-1347.56Show/hide
Query:  FAAKAQRLLGTVSDLKHMARHCESLLNGELGLERLAKLLGVSRTGTAHHAGSDSLLTASVYAKMKEKFEFSSEHFDGFLYGL
        FA +  ++ G V D K MA  CE  L   LGL +LA+LL ++R G AHHAGSDSL+TA V+ K+K  +E  S    G +YG+
Subjt:  FAAKAQRLLGTVSDLKHMARHCESLLNGELGLERLAKLLGVSRTGTAHHAGSDSLLTASVYAKMKEKFEFSSEHFDGFLYGL

AT1G80780.1 Polynucleotidyl transferase, ribonuclease H-like superfamily protein2.9e-1149.32Show/hide
Query:  TVSDLKHMARHCESLLNGELGLERLAKLLGVSRTGTAHHAGSDSLLTASVYAKMKEKFEFSSEH-FDGFLYGL
        TV D+KH+ + C SL     GL +LA+LL V R G  H AGSDSLLT+  + K+KE F     H + G LYGL
Subjt:  TVSDLKHMARHCESLLNGELGLERLAKLLGVSRTGTAHHAGSDSLLTASVYAKMKEKFEFSSEH-FDGFLYGL

AT1G80780.2 Polynucleotidyl transferase, ribonuclease H-like superfamily protein2.9e-1149.32Show/hide
Query:  TVSDLKHMARHCESLLNGELGLERLAKLLGVSRTGTAHHAGSDSLLTASVYAKMKEKFEFSSEH-FDGFLYGL
        TV D+KH+ + C SL     GL +LA+LL V R G  H AGSDSLLT+  + K+KE F     H + G LYGL
Subjt:  TVSDLKHMARHCESLLNGELGLERLAKLLGVSRTGTAHHAGSDSLLTASVYAKMKEKFEFSSEH-FDGFLYGL

AT3G44240.1 Polynucleotidyl transferase, ribonuclease H-like superfamily protein7.8e-1252.86Show/hide
Query:  EMFAAKAQRLLGTVSDLKHMARHCESLLNGELGLERLAKLLGVSRTGTAHHAGSDSLLTASVYAKMKEKF
        E F+    R+LG+V DLK MA  CE  L+  LGLE LA   G++R GTAHHAGS++ LTA V+AK+   F
Subjt:  EMFAAKAQRLLGTVSDLKHMARHCESLLNGELGLERLAKLLGVSRTGTAHHAGSDSLLTASVYAKMKEKF

AT5G10960.1 Polynucleotidyl transferase, ribonuclease H-like superfamily protein3.5e-1250.68Show/hide
Query:  TVSDLKHMARHCESLLNGELGLERLAKLLGVSRTGTAHHAGSDSLLTASVYAKMKEK-FEFSSEHFDGFLYGL
        TV D+KH+   C  L     GL RLA+L+GV R G  H AGSDSLLT   + K+KE+ F  S+E + G LYGL
Subjt:  TVSDLKHMARHCESLLNGELGLERLAKLLGVSRTGTAHHAGSDSLLTASVYAKMKEK-FEFSSEHFDGFLYGL


Sequences Show/hide sequences
CDS sequenceShow/hide CDS sequence
ATGGAGATGTTCGCCGCCAAAGCCCAGAGACTGTTGGGCACTGTCAGCGACCTCAAGCACATGGCTCGCCACTGCGAAAGCTTGCTCAACGGCGAGCTCGGGCTGGAGAG
GCTGGCCAAGTTGCTCGGCGTGAGTCGAACCGGCACCGCCCACCATGCCGGTTCCGATAGCTTGCTGACGGCTTCTGTCTACGCGAAGATGAAGGAGAAGTTCGAGTTTT
CATCGGAGCACTTCGACGGGTTTTTATACGGCCTCCGTTACAGAATCCGGGGACCGATCGTAAAGATCGCCAAGCCATCCCTTCCACCACTTTGA
mRNA sequenceShow/hide mRNA sequence
ATGGAGATGTTCGCCGCCAAAGCCCAGAGACTGTTGGGCACTGTCAGCGACCTCAAGCACATGGCTCGCCACTGCGAAAGCTTGCTCAACGGCGAGCTCGGGCTGGAGAG
GCTGGCCAAGTTGCTCGGCGTGAGTCGAACCGGCACCGCCCACCATGCCGGTTCCGATAGCTTGCTGACGGCTTCTGTCTACGCGAAGATGAAGGAGAAGTTCGAGTTTT
CATCGGAGCACTTCGACGGGTTTTTATACGGCCTCCGTTACAGAATCCGGGGACCGATCGTAAAGATCGCCAAGCCATCCCTTCCACCACTTTGA
Protein sequenceShow/hide protein sequence
MEMFAAKAQRLLGTVSDLKHMARHCESLLNGELGLERLAKLLGVSRTGTAHHAGSDSLLTASVYAKMKEKFEFSSEHFDGFLYGLRYRIRGPIVKIAKPSLPPL