| GenBank top hits | e value | %identity | Alignment |
|---|
| XP_022158561.1 DNA-directed RNA polymerase V subunit 5A [Momordica charantia] | 1.7e-111 | 92.04 | Show/hide |
Query: MEEDWLEGEPNRVELGTCLSSYIDDGTTESHRYYLSRRTVLEMLRDRGYTLNSSDIDLTLQQFREIYGQTPDVDRLKLSAVHSSDPSKRILVIFCGTGAV
MEED EGEPNRVELGTCLSSYID+G+TESHRY+L RRTVLEMLRDRGYT +SD DLTLQQFREIYGQ+PDVDRLKLSAVH SDPSKRILVIFCGTG+V
Subjt: MEEDWLEGEPNRVELGTCLSSYIDDGTTESHRYYLSRRTVLEMLRDRGYTLNSSDIDLTLQQFREIYGQTPDVDRLKLSAVHSSDPSKRILVIFCGTGAV
Query: KVNAIRNIAGQIVNKDTLHGLILIVQNQITNQAMKAVDLFSFKVEIFQITDLLVNITKHALKPNHQVLTEEEKEKLLKQYSIEEKQLPRMLRTDSIARYY
KVNAIRNIAGQIVNKDTLHGLILIVQNQITNQAMKAVDLFSFKVEIFQITDLLVNITKHALKPNHQVLTEEEK+KLLKQYSIEEKQLPRMLRTD+IARYY
Subjt: KVNAIRNIAGQIVNKDTLHGLILIVQNQITNQAMKAVDLFSFKVEIFQITDLLVNITKHALKPNHQVLTEEEKEKLLKQYSIEEKQLPRMLRTDSIARYY
Query: GLEKGQVLKVTYDGDMTRTHVTYRCV
GLEKGQV+KVTYDGDMT +HVTYRCV
Subjt: GLEKGQVLKVTYDGDMTRTHVTYRCV
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| XP_022950955.1 DNA-directed RNA polymerase V subunit 5A isoform X2 [Cucurbita moschata] | 1.4e-110 | 91.15 | Show/hide |
Query: MEEDWLEGEPNRVELGTCLSSYIDDGTTESHRYYLSRRTVLEMLRDRGYTLNSSDIDLTLQQFREIYGQTPDVDRLKLSAVHSSDPSKRILVIFCGTGAV
MEED GEPNRVELGTCLSSYIDDGTTESHRYYLSRRTVLEMLRDRGYT+N SDIDLTLQQFREIYGQ DVDRLKLSA H +DPSKRILVIFCGTGAV
Subjt: MEEDWLEGEPNRVELGTCLSSYIDDGTTESHRYYLSRRTVLEMLRDRGYTLNSSDIDLTLQQFREIYGQTPDVDRLKLSAVHSSDPSKRILVIFCGTGAV
Query: KVNAIRNIAGQIVNKDTLHGLILIVQNQITNQAMKAVDLFSFKVEIFQITDLLVNITKHALKPNHQVLTEEEKEKLLKQYSIEEKQLPRMLRTDSIARYY
KV+AIRNIAGQIVNK+TLHGLILIVQNQITNQAMKAV++FSFKVEIFQITDLLVNITKHALKPNHQVLTEEEK+KLL+QYSIEEKQLPRMLRTD+IARYY
Subjt: KVNAIRNIAGQIVNKDTLHGLILIVQNQITNQAMKAVDLFSFKVEIFQITDLLVNITKHALKPNHQVLTEEEKEKLLKQYSIEEKQLPRMLRTDSIARYY
Query: GLEKGQVLKVTYDGDMTRTHVTYRCV
GLEKGQ++KVTYDGDMTR+HVTYRCV
Subjt: GLEKGQVLKVTYDGDMTRTHVTYRCV
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| XP_022971518.1 DNA-directed RNA polymerase V subunit 5A isoform X2 [Cucurbita maxima] | 8.4e-111 | 91.15 | Show/hide |
Query: MEEDWLEGEPNRVELGTCLSSYIDDGTTESHRYYLSRRTVLEMLRDRGYTLNSSDIDLTLQQFREIYGQTPDVDRLKLSAVHSSDPSKRILVIFCGTGAV
MEED GEPNRVELGTCLSSYIDDGTTESHRYYLSRRTVLEMLRDRGYT+N SDIDLTLQQFREIYGQ PDVDRLKLSA H +DPSKRILVIFCGTGAV
Subjt: MEEDWLEGEPNRVELGTCLSSYIDDGTTESHRYYLSRRTVLEMLRDRGYTLNSSDIDLTLQQFREIYGQTPDVDRLKLSAVHSSDPSKRILVIFCGTGAV
Query: KVNAIRNIAGQIVNKDTLHGLILIVQNQITNQAMKAVDLFSFKVEIFQITDLLVNITKHALKPNHQVLTEEEKEKLLKQYSIEEKQLPRMLRTDSIARYY
KV+AIRNIAGQIVNK+TLHGLILIVQNQITNQAMKAV++FSFKVEIFQITDLLVNITKHALKPNHQVLTEEEK+KLL+QYSIEEKQLPRMLRTD+IARYY
Subjt: KVNAIRNIAGQIVNKDTLHGLILIVQNQITNQAMKAVDLFSFKVEIFQITDLLVNITKHALKPNHQVLTEEEKEKLLKQYSIEEKQLPRMLRTDSIARYY
Query: GLEKGQVLKVTYDGDMTRTHVTYRCV
LEKGQ++KVTYDGDMTR+HVTYRCV
Subjt: GLEKGQVLKVTYDGDMTRTHVTYRCV
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| XP_023539155.1 DNA-directed RNA polymerase V subunit 5A [Cucurbita pepo subsp. pepo] | 7.6e-112 | 91.59 | Show/hide |
Query: MEEDWLEGEPNRVELGTCLSSYIDDGTTESHRYYLSRRTVLEMLRDRGYTLNSSDIDLTLQQFREIYGQTPDVDRLKLSAVHSSDPSKRILVIFCGTGAV
MEED GEPNRVELGTCLSSYIDDGTTESHRYYLSRRTVLEMLRDRGYT+N SDIDLTLQQFREIYGQ PDVDRLKLSA H +DPSKRILVIFCGTGAV
Subjt: MEEDWLEGEPNRVELGTCLSSYIDDGTTESHRYYLSRRTVLEMLRDRGYTLNSSDIDLTLQQFREIYGQTPDVDRLKLSAVHSSDPSKRILVIFCGTGAV
Query: KVNAIRNIAGQIVNKDTLHGLILIVQNQITNQAMKAVDLFSFKVEIFQITDLLVNITKHALKPNHQVLTEEEKEKLLKQYSIEEKQLPRMLRTDSIARYY
KV+AIRNIAGQIVNK+TLHGLILIVQNQITNQAMKAV++FSFKVEIFQITDLLVNITKHALKPNHQVLTEEEK+KLL+QYSIEEKQLPRMLRTD+IARYY
Subjt: KVNAIRNIAGQIVNKDTLHGLILIVQNQITNQAMKAVDLFSFKVEIFQITDLLVNITKHALKPNHQVLTEEEKEKLLKQYSIEEKQLPRMLRTDSIARYY
Query: GLEKGQVLKVTYDGDMTRTHVTYRCV
GLEKGQ++KVTYDGDMTR+HVTYRCV
Subjt: GLEKGQVLKVTYDGDMTRTHVTYRCV
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| XP_038903402.1 DNA-directed RNA polymerase V subunit 5A [Benincasa hispida] | 2.9e-111 | 90.71 | Show/hide |
Query: MEEDWLEGEPNRVELGTCLSSYIDDGTTESHRYYLSRRTVLEMLRDRGYTLNSSDIDLTLQQFREIYGQTPDVDRLKLSAVHSSDPSKRILVIFCGTGAV
MEED EGEPN VE GTCLSSYID+GTTESHRY+LSRRTVLEMLRDRGYTLNSSDIDL+LQQFREIYGQ+PDVDRLKLSAVH SDPSKR+LVIFCGTGAV
Subjt: MEEDWLEGEPNRVELGTCLSSYIDDGTTESHRYYLSRRTVLEMLRDRGYTLNSSDIDLTLQQFREIYGQTPDVDRLKLSAVHSSDPSKRILVIFCGTGAV
Query: KVNAIRNIAGQIVNKDTLHGLILIVQNQITNQAMKAVDLFSFKVEIFQITDLLVNITKHALKPNHQVLTEEEKEKLLKQYSIEEKQLPRMLRTDSIARYY
KVNAIRNIAGQI NKD+LHGLILIVQNQITNQAMKAV+LFSFKVEIFQITDLLVNITKHALKPNHQVL+EEEK+KLL+QYSIEEKQLPRMLR D++ARYY
Subjt: KVNAIRNIAGQIVNKDTLHGLILIVQNQITNQAMKAVDLFSFKVEIFQITDLLVNITKHALKPNHQVLTEEEKEKLLKQYSIEEKQLPRMLRTDSIARYY
Query: GLEKGQVLKVTYDGDMTRTHVTYRCV
GLEKGQV+KVTYDGDMTR+HVTYRCV
Subjt: GLEKGQVLKVTYDGDMTRTHVTYRCV
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| TrEMBL top hits | e value | %identity | Alignment |
|---|
| A0A6J1E191 DNA-directed RNA polymerase V subunit 5A | 8.2e-112 | 92.04 | Show/hide |
Query: MEEDWLEGEPNRVELGTCLSSYIDDGTTESHRYYLSRRTVLEMLRDRGYTLNSSDIDLTLQQFREIYGQTPDVDRLKLSAVHSSDPSKRILVIFCGTGAV
MEED EGEPNRVELGTCLSSYID+G+TESHRY+L RRTVLEMLRDRGYT +SD DLTLQQFREIYGQ+PDVDRLKLSAVH SDPSKRILVIFCGTG+V
Subjt: MEEDWLEGEPNRVELGTCLSSYIDDGTTESHRYYLSRRTVLEMLRDRGYTLNSSDIDLTLQQFREIYGQTPDVDRLKLSAVHSSDPSKRILVIFCGTGAV
Query: KVNAIRNIAGQIVNKDTLHGLILIVQNQITNQAMKAVDLFSFKVEIFQITDLLVNITKHALKPNHQVLTEEEKEKLLKQYSIEEKQLPRMLRTDSIARYY
KVNAIRNIAGQIVNKDTLHGLILIVQNQITNQAMKAVDLFSFKVEIFQITDLLVNITKHALKPNHQVLTEEEK+KLLKQYSIEEKQLPRMLRTD+IARYY
Subjt: KVNAIRNIAGQIVNKDTLHGLILIVQNQITNQAMKAVDLFSFKVEIFQITDLLVNITKHALKPNHQVLTEEEKEKLLKQYSIEEKQLPRMLRTDSIARYY
Query: GLEKGQVLKVTYDGDMTRTHVTYRCV
GLEKGQV+KVTYDGDMT +HVTYRCV
Subjt: GLEKGQVLKVTYDGDMTRTHVTYRCV
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| A0A6J1GH86 DNA-directed RNA polymerase V subunit 5A isoform X2 | 6.9e-111 | 91.15 | Show/hide |
Query: MEEDWLEGEPNRVELGTCLSSYIDDGTTESHRYYLSRRTVLEMLRDRGYTLNSSDIDLTLQQFREIYGQTPDVDRLKLSAVHSSDPSKRILVIFCGTGAV
MEED GEPNRVELGTCLSSYIDDGTTESHRYYLSRRTVLEMLRDRGYT+N SDIDLTLQQFREIYGQ DVDRLKLSA H +DPSKRILVIFCGTGAV
Subjt: MEEDWLEGEPNRVELGTCLSSYIDDGTTESHRYYLSRRTVLEMLRDRGYTLNSSDIDLTLQQFREIYGQTPDVDRLKLSAVHSSDPSKRILVIFCGTGAV
Query: KVNAIRNIAGQIVNKDTLHGLILIVQNQITNQAMKAVDLFSFKVEIFQITDLLVNITKHALKPNHQVLTEEEKEKLLKQYSIEEKQLPRMLRTDSIARYY
KV+AIRNIAGQIVNK+TLHGLILIVQNQITNQAMKAV++FSFKVEIFQITDLLVNITKHALKPNHQVLTEEEK+KLL+QYSIEEKQLPRMLRTD+IARYY
Subjt: KVNAIRNIAGQIVNKDTLHGLILIVQNQITNQAMKAVDLFSFKVEIFQITDLLVNITKHALKPNHQVLTEEEKEKLLKQYSIEEKQLPRMLRTDSIARYY
Query: GLEKGQVLKVTYDGDMTRTHVTYRCV
GLEKGQ++KVTYDGDMTR+HVTYRCV
Subjt: GLEKGQVLKVTYDGDMTRTHVTYRCV
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| A0A6J1GHB9 DNA-directed RNA polymerase V subunit 5A isoform X1 | 1.1e-108 | 78.89 | Show/hide |
Query: MEEDWLEGEPNRVELGTCLSSYIDDGTTESHRYYLSRRTVLEMLRDRGYTLNSSDIDLTLQQFREIYGQTPDVDRLKLSAVHSSDPSKRILVIFCGTGAV
MEED GEPNRVELGTCLSSYIDDGTTESHRYYLSRRTVLEMLRDRGYT+N SDIDLTLQQFREIYGQ DVDRLKLSA H +DPSKRILVIFCGTGAV
Subjt: MEEDWLEGEPNRVELGTCLSSYIDDGTTESHRYYLSRRTVLEMLRDRGYTLNSSDIDLTLQQFREIYGQTPDVDRLKLSAVHSSDPSKRILVIFCGTGAV
Query: KVNAIRNIAGQIVNKDTLHGLILIVQNQITNQAMKAVDLFSFKVEIFQITDLLVNITKHALKPNHQVLTEEEKEKLLKQYSIEEKQLPRMLRTDSIARYY
KV+AIRNIAGQIVNK+TLHGLILIVQNQITNQAMKAV++FSFKVEIFQITDLLVNITKHALKPNHQVLTEEEK+KLL+QYSIEEKQLPRMLRTD+IARYY
Subjt: KVNAIRNIAGQIVNKDTLHGLILIVQNQITNQAMKAVDLFSFKVEIFQITDLLVNITKHALKPNHQVLTEEEKEKLLKQYSIEEKQLPRMLRTDSIARYY
Query: GLEKGQVLKVTYDGDMTRTHVTYRCVCFVLTIYVPELLVFTRFSVQIFMTTGFCKKFVSTITADTSKRYL
GLEKGQ++KVTYDGDMTR+HVT++ +CFV P+ L+ + TT +F + S+ YL
Subjt: GLEKGQVLKVTYDGDMTRTHVTYRCVCFVLTIYVPELLVFTRFSVQIFMTTGFCKKFVSTITADTSKRYL
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| A0A6J1I260 DNA-directed RNA polymerase V subunit 5A isoform X1 | 2.9e-109 | 89.52 | Show/hide |
Query: MEEDWLEGEPNRVELGTCLSSYIDDGTTESHRYYLSRRTVLEMLRDRGYTLNSSDIDLTLQQFREIYGQTPDVDRLKLSAVHSSDPSKRILVIFCGTGAV
MEED GEPNRVELGTCLSSYIDDGTTESHRYYLSRRTVLEMLRDRGYT+N SDIDLTLQQFREIYGQ PDVDRLKLSA H +DPSKRILVIFCGTGAV
Subjt: MEEDWLEGEPNRVELGTCLSSYIDDGTTESHRYYLSRRTVLEMLRDRGYTLNSSDIDLTLQQFREIYGQTPDVDRLKLSAVHSSDPSKRILVIFCGTGAV
Query: KVNAIRNIAGQIVNKDTLHGLILIVQNQITNQAMKAVDLFSFKVEIFQITDLLVNITKHALKPNHQVLTEEEKEKLLKQYSIEEKQLPRMLRTDSIARYY
KV+AIRNIAGQIVNK+TLHGLILIVQNQITNQAMKAV++FSFKVEIFQITDLLVNITKHALKPNHQVLTEEEK+KLL+QYSIEEKQLPRMLRTD+IARYY
Subjt: KVNAIRNIAGQIVNKDTLHGLILIVQNQITNQAMKAVDLFSFKVEIFQITDLLVNITKHALKPNHQVLTEEEKEKLLKQYSIEEKQLPRMLRTDSIARYY
Query: GLEKGQVLKVTYDGDMTRTHVTYRCVCFV
LEKGQ++KVTYDGDMTR+HVT++ +CFV
Subjt: GLEKGQVLKVTYDGDMTRTHVTYRCVCFV
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| A0A6J1I733 DNA-directed RNA polymerase V subunit 5A isoform X2 | 4.1e-111 | 91.15 | Show/hide |
Query: MEEDWLEGEPNRVELGTCLSSYIDDGTTESHRYYLSRRTVLEMLRDRGYTLNSSDIDLTLQQFREIYGQTPDVDRLKLSAVHSSDPSKRILVIFCGTGAV
MEED GEPNRVELGTCLSSYIDDGTTESHRYYLSRRTVLEMLRDRGYT+N SDIDLTLQQFREIYGQ PDVDRLKLSA H +DPSKRILVIFCGTGAV
Subjt: MEEDWLEGEPNRVELGTCLSSYIDDGTTESHRYYLSRRTVLEMLRDRGYTLNSSDIDLTLQQFREIYGQTPDVDRLKLSAVHSSDPSKRILVIFCGTGAV
Query: KVNAIRNIAGQIVNKDTLHGLILIVQNQITNQAMKAVDLFSFKVEIFQITDLLVNITKHALKPNHQVLTEEEKEKLLKQYSIEEKQLPRMLRTDSIARYY
KV+AIRNIAGQIVNK+TLHGLILIVQNQITNQAMKAV++FSFKVEIFQITDLLVNITKHALKPNHQVLTEEEK+KLL+QYSIEEKQLPRMLRTD+IARYY
Subjt: KVNAIRNIAGQIVNKDTLHGLILIVQNQITNQAMKAVDLFSFKVEIFQITDLLVNITKHALKPNHQVLTEEEKEKLLKQYSIEEKQLPRMLRTDSIARYY
Query: GLEKGQVLKVTYDGDMTRTHVTYRCV
LEKGQ++KVTYDGDMTR+HVTYRCV
Subjt: GLEKGQVLKVTYDGDMTRTHVTYRCV
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| SwissProt top hits | e value | %identity | Alignment |
|---|
| A8XGH1 DNA-directed RNA polymerases I, II, and III subunit RPABC1 | 2.4e-28 | 33.01 | Show/hide |
Query: DGTTESHRYYLSRRTVLEMLRDRGYTLNSSDIDLTLQQFREIYGQTPDVDR-----LKLSAVHSSDPSKRILVIFCGTGAVKVNAIRNIAGQIVNKDTLH
D E++R + R+TVL+M+ DRGY + ++D L+ F+E +G P + L + H+ DP+ ++ V F + + I+ I Q + + +
Subjt: DGTTESHRYYLSRRTVLEMLRDRGYTLNSSDIDLTLQQFREIYGQTPDVDR-----LKLSAVHSSDPSKRILVIFCGTGAVKVNAIRNIAGQIVNKDTLH
Query: GLILIVQNQITNQAMKAVDLFS--FKVEIFQITDLLVNITKHALKPNHQVLTEEEKEKLLKQYSIEEKQLPRMLRTDSIARYYGLEKGQVLKVTYDGDMT
I++VQ +T A +++ + + +E F +L+VNIT+H L P H V+T EEK +LL +Y +++ QLPR+ + D +ARY+GL +GQV+K+ +
Subjt: GLILIVQNQITNQAMKAVDLFS--FKVEIFQITDLLVNITKHALKPNHQVLTEEEKEKLLKQYSIEEKQLPRMLRTDSIARYYGLEKGQVLKVTYDGDMT
Query: RTHVTYRCV
++TYR V
Subjt: RTHVTYRCV
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| O81098 DNA-directed RNA polymerases II and IV subunit 5A | 6.4e-29 | 37 | Show/hide |
Query: ESHRYYLSRRTVLEMLRDRGYTLNSSDIDLTLQQFREIYGQTPDVDRLKLSAVHSSDPSKRILVIFCGTGAVKVNAIRNIAGQIVNKDTLHGLILIVQNQ
E R Y ++T+++MLRDRGY + S++ +T QQF +G + L +D S ++ + F V V ++ ++ +++ IL+VQ
Subjt: ESHRYYLSRRTVLEMLRDRGYTLNSSDIDLTLQQFREIYGQTPDVDRLKLSAVHSSDPSKRILVIFCGTGAVKVNAIRNIAGQIVNKDTLHGLILIVQNQ
Query: ITNQAMKAVDLFS--FKVEIFQITDLLVNITKHALKPNHQVLTEEEKEKLLKQYSIEEKQLPRMLRTDSIARYYGLEKGQVLKVTYDGDMTRTHVTYRCV
+T A + S F +E+FQ ++LVNI +H L P HQVLT EEK+ LL++Y+++E QLPR+ TD IARY+GL++GQV+K+ + +VTYR V
Subjt: ITNQAMKAVDLFS--FKVEIFQITDLLVNITKHALKPNHQVLTEEEKEKLLKQYSIEEKQLPRMLRTDSIARYYGLEKGQVLKVTYDGDMTRTHVTYRCV
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| Q9M1H8 DNA-directed RNA polymerase V subunit 5C | 1.2e-51 | 45.58 | Show/hide |
Query: EEDWLEGEPNRVELGT-CLSSYIDDGTTESHRYYLSRRTVLEMLRDRGYTLNSSDIDLTLQQFREIYGQTPDVDRLKLSAVHSSDPSKRILVIFCGTGAV
EE E + + GT C+S D G ES R+YL+R T EMLRDRGY +N +++ LTL +FR ++G+ P+++RL++ SDP K+ILV+F GT +
Subjt: EEDWLEGEPNRVELGT-CLSSYIDDGTTESHRYYLSRRTVLEMLRDRGYTLNSSDIDLTLQQFREIYGQTPDVDRLKLSAVHSSDPSKRILVIFCGTGAV
Query: KVNAIRNIAGQIVNKDTLHGLILIVQNQITNQAMKAVDLFSFKVEIFQITDLLVNITKHALKPNHQVLTEEEKEKLLKQYSIEEKQLPRMLRTDSIARYY
V ++R + QI N LH +IL++Q+++ + A KA+ F F VE F I DLLVNITKH +P ++L +EEKE+LL+++++E+KQLP + DS RYY
Subjt: KVNAIRNIAGQIVNKDTLHGLILIVQNQITNQAMKAVDLFSFKVEIFQITDLLVNITKHALKPNHQVLTEEEKEKLLKQYSIEEKQLPRMLRTDSIARYY
Query: GLEKGQVLKVTYDGDMTRTHVTYRCV
GL+K QV+K+TY + VTYRC+
Subjt: GLEKGQVLKVTYDGDMTRTHVTYRCV
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| Q9M1J2 DNA-directed RNA polymerase V subunit 5A | 1.3e-74 | 62.68 | Show/hide |
Query: CLSSYIDDGTTESHRYYLSRRTVLEMLRDRGYTLNSSDIDLTLQQFREIYGQTPDVDRLKLSAVHSSDPSKRILVIFCGTGAVKVNAIRNIAGQIVNKDT
CLS Y+D + ESHRYYL+RR L+MLRDRGY ++ DI+L+L FR +YG+ PDVDRL++SA+H SD +K++ ++F GT VKVNAIR++ I++++T
Subjt: CLSSYIDDGTTESHRYYLSRRTVLEMLRDRGYTLNSSDIDLTLQQFREIYGQTPDVDRLKLSAVHSSDPSKRILVIFCGTGAVKVNAIRNIAGQIVNKDT
Query: LHGLILIVQNQITNQAMKAVDLFSFKVEIFQITDLLVNITKHALKPNHQVLTEEEKEKLLKQYSIEEKQLPRMLRTDSIARYYGLEKGQVLKVTYDGDMT
+ GLIL++QN +TNQA+KA++LFSFKVEIFQITDLLVNITKH+LKP HQVL +EEK LLK++SIEEKQLPR+ + D+I RYYGLEKGQV+KV Y G++T
Subjt: LHGLILIVQNQITNQAMKAVDLFSFKVEIFQITDLLVNITKHALKPNHQVLTEEEKEKLLKQYSIEEKQLPRMLRTDSIARYYGLEKGQVLKVTYDGDMT
Query: RTHVTYRCV
+HV +RCV
Subjt: RTHVTYRCV
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| Q9ZVB9 DNA-directed RNA polymerases IV and V subunit 5B | 4.0e-71 | 58.37 | Show/hide |
Query: LEGEPNRVELGTCLSSYIDDGTTESHRYYLSRRTVLEMLRDRGYTLNSSDIDLTLQQFREIYGQTPDVDRLKLSAVHSSDPSKRILVIFCGTGAVKVNAI
+EG+ + +G +S + E H+YYL+RRT +EMLRDRGY ++ DI+L+LQQFR +YG+ PDVD L++SA H D SK+I V+FCGTG VKVNA+
Subjt: LEGEPNRVELGTCLSSYIDDGTTESHRYYLSRRTVLEMLRDRGYTLNSSDIDLTLQQFREIYGQTPDVDRLKLSAVHSSDPSKRILVIFCGTGAVKVNAI
Query: RNIAGQIVNKDTLHGLILIVQNQITNQAMKAVDLFSFKVEIFQITDLLVNITKHALKPNHQVLTEEEKEKLLKQYSIEEKQLPRMLRTDSIARYYGLEKG
R IA +++++ + GLIL++Q+ ITNQA+KAV+LFSFKVE+F+ITDLLVN++KH L+P HQVL ++EKE LLK++SIEEKQLPR+ D I RYYGLE G
Subjt: RNIAGQIVNKDTLHGLILIVQNQITNQAMKAVDLFSFKVEIFQITDLLVNITKHALKPNHQVLTEEEKEKLLKQYSIEEKQLPRMLRTDSIARYYGLEKG
Query: QVLKVTYDGDMTRTHVTYRCV
QV+KVTY +++ +HVTYRCV
Subjt: QVLKVTYDGDMTRTHVTYRCV
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| Arabidopsis top hits | e value | %identity | Alignment |
|---|
| AT2G41340.1 RNA polymerase II fifth largest subunit, D | 2.8e-72 | 58.37 | Show/hide |
Query: LEGEPNRVELGTCLSSYIDDGTTESHRYYLSRRTVLEMLRDRGYTLNSSDIDLTLQQFREIYGQTPDVDRLKLSAVHSSDPSKRILVIFCGTGAVKVNAI
+EG+ + +G +S + E H+YYL+RRT +EMLRDRGY ++ DI+L+LQQFR +YG+ PDVD L++SA H D SK+I V+FCGTG VKVNA+
Subjt: LEGEPNRVELGTCLSSYIDDGTTESHRYYLSRRTVLEMLRDRGYTLNSSDIDLTLQQFREIYGQTPDVDRLKLSAVHSSDPSKRILVIFCGTGAVKVNAI
Query: RNIAGQIVNKDTLHGLILIVQNQITNQAMKAVDLFSFKVEIFQITDLLVNITKHALKPNHQVLTEEEKEKLLKQYSIEEKQLPRMLRTDSIARYYGLEKG
R IA +++++ + GLIL++Q+ ITNQA+KAV+LFSFKVE+F+ITDLLVN++KH L+P HQVL ++EKE LLK++SIEEKQLPR+ D I RYYGLE G
Subjt: RNIAGQIVNKDTLHGLILIVQNQITNQAMKAVDLFSFKVEIFQITDLLVNITKHALKPNHQVLTEEEKEKLLKQYSIEEKQLPRMLRTDSIARYYGLEKG
Query: QVLKVTYDGDMTRTHVTYRCV
QV+KVTY +++ +HVTYRCV
Subjt: QVLKVTYDGDMTRTHVTYRCV
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| AT3G22320.1 Eukaryotic rpb5 RNA polymerase subunit family protein | 4.6e-30 | 37 | Show/hide |
Query: ESHRYYLSRRTVLEMLRDRGYTLNSSDIDLTLQQFREIYGQTPDVDRLKLSAVHSSDPSKRILVIFCGTGAVKVNAIRNIAGQIVNKDTLHGLILIVQNQ
E R Y ++T+++MLRDRGY + S++ +T QQF +G + L +D S ++ + F V V ++ ++ +++ IL+VQ
Subjt: ESHRYYLSRRTVLEMLRDRGYTLNSSDIDLTLQQFREIYGQTPDVDRLKLSAVHSSDPSKRILVIFCGTGAVKVNAIRNIAGQIVNKDTLHGLILIVQNQ
Query: ITNQAMKAVDLFS--FKVEIFQITDLLVNITKHALKPNHQVLTEEEKEKLLKQYSIEEKQLPRMLRTDSIARYYGLEKGQVLKVTYDGDMTRTHVTYRCV
+T A + S F +E+FQ ++LVNI +H L P HQVLT EEK+ LL++Y+++E QLPR+ TD IARY+GL++GQV+K+ + +VTYR V
Subjt: ITNQAMKAVDLFS--FKVEIFQITDLLVNITKHALKPNHQVLTEEEKEKLLKQYSIEEKQLPRMLRTDSIARYYGLEKGQVLKVTYDGDMTRTHVTYRCV
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| AT3G54490.1 RNA polymerase II fifth largest subunit, E | 8.5e-53 | 45.58 | Show/hide |
Query: EEDWLEGEPNRVELGT-CLSSYIDDGTTESHRYYLSRRTVLEMLRDRGYTLNSSDIDLTLQQFREIYGQTPDVDRLKLSAVHSSDPSKRILVIFCGTGAV
EE E + + GT C+S D G ES R+YL+R T EMLRDRGY +N +++ LTL +FR ++G+ P+++RL++ SDP K+ILV+F GT +
Subjt: EEDWLEGEPNRVELGT-CLSSYIDDGTTESHRYYLSRRTVLEMLRDRGYTLNSSDIDLTLQQFREIYGQTPDVDRLKLSAVHSSDPSKRILVIFCGTGAV
Query: KVNAIRNIAGQIVNKDTLHGLILIVQNQITNQAMKAVDLFSFKVEIFQITDLLVNITKHALKPNHQVLTEEEKEKLLKQYSIEEKQLPRMLRTDSIARYY
V ++R + QI N LH +IL++Q+++ + A KA+ F F VE F I DLLVNITKH +P ++L +EEKE+LL+++++E+KQLP + DS RYY
Subjt: KVNAIRNIAGQIVNKDTLHGLILIVQNQITNQAMKAVDLFSFKVEIFQITDLLVNITKHALKPNHQVLTEEEKEKLLKQYSIEEKQLPRMLRTDSIARYY
Query: GLEKGQVLKVTYDGDMTRTHVTYRCV
GL+K QV+K+TY + VTYRC+
Subjt: GLEKGQVLKVTYDGDMTRTHVTYRCV
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| AT3G57080.1 Eukaryotic rpb5 RNA polymerase subunit family protein | 9.4e-76 | 62.68 | Show/hide |
Query: CLSSYIDDGTTESHRYYLSRRTVLEMLRDRGYTLNSSDIDLTLQQFREIYGQTPDVDRLKLSAVHSSDPSKRILVIFCGTGAVKVNAIRNIAGQIVNKDT
CLS Y+D + ESHRYYL+RR L+MLRDRGY ++ DI+L+L FR +YG+ PDVDRL++SA+H SD +K++ ++F GT VKVNAIR++ I++++T
Subjt: CLSSYIDDGTTESHRYYLSRRTVLEMLRDRGYTLNSSDIDLTLQQFREIYGQTPDVDRLKLSAVHSSDPSKRILVIFCGTGAVKVNAIRNIAGQIVNKDT
Query: LHGLILIVQNQITNQAMKAVDLFSFKVEIFQITDLLVNITKHALKPNHQVLTEEEKEKLLKQYSIEEKQLPRMLRTDSIARYYGLEKGQVLKVTYDGDMT
+ GLIL++QN +TNQA+KA++LFSFKVEIFQITDLLVNITKH+LKP HQVL +EEK LLK++SIEEKQLPR+ + D+I RYYGLEKGQV+KV Y G++T
Subjt: LHGLILIVQNQITNQAMKAVDLFSFKVEIFQITDLLVNITKHALKPNHQVLTEEEKEKLLKQYSIEEKQLPRMLRTDSIARYYGLEKGQVLKVTYDGDMT
Query: RTHVTYRCV
+HV +RCV
Subjt: RTHVTYRCV
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| AT5G57980.1 RNA polymerase II fifth largest subunit, C | 2.1e-27 | 35.75 | Show/hide |
Query: IDDGTTESHRYYLSRRTVLEMLRDRGYTLNSSDIDLTLQQFREIYGQT---PDVDRLKLSAVHSSDPSKRILVIFCGTGAVKVNAIRNIAGQIVNKDTLH
+ D E R + RRTVL+MLRDRGYT+ SD++L ++F + + +T + + L +SA +P+ +I V + V V I+ + D +H
Subjt: IDDGTTESHRYYLSRRTVLEMLRDRGYTLNSSDIDLTLQQFREIYGQT---PDVDRLKLSAVHSSDPSKRILVIFCGTGAVKVNAIRNIAGQIVNKDTLH
Query: GLILIVQNQITNQAMKAVDLFS--FKVEIFQITDLLVNITKHALKPNHQVLTEEEKEKLLKQYSIEEKQLPRMLRTDSIARYYGLEKGQVLKVTYDGDMT
I++V IT A AV + +E+F+ +L+ NIT+H L + VL ++ K+KLL Y++++ QLPR+L TD +ARYYGL++GQV+K+ +
Subjt: GLILIVQNQITNQAMKAVDLFS--FKVEIFQITDLLVNITKHALKPNHQVLTEEEKEKLLKQYSIEEKQLPRMLRTDSIARYYGLEKGQVLKVTYDGDMT
Query: RTHVTYR
+ TYR
Subjt: RTHVTYR
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