| GenBank top hits | e value | %identity | Alignment |
|---|
| ASY96794.1 RNA polymerase beta' subunit [Cucumis melo var. momordica] | 2.4e-70 | 77.84 | Show/hide |
Query: APTLHRLGIQAFQPILVEGRAICLHPLVCKGFNADFDGDQMAVHVPLSLEAQAEARLLMFSHMNLLSSAIGDPISVPTQDMLIGLYVLTSGNRR------
APTLHRLGIQAFQPILVEGRAICLHPLVCKGFNADFDGDQMAVHVPLSLEAQAEARLLMFSHMNLLSSAIGDPISVPTQDMLIGLYVLTSGNRR
Subjt: APTLHRLGIQAFQPILVEGRAICLHPLVCKGFNADFDGDQMAVHVPLSLEAQAEARLLMFSHMNLLSSAIGDPISVPTQDMLIGLYVLTSGNRR------
Query: -----------------------------------AYRQKRINLDSPLWLRWRLDQRVIASREAPIEVHYESLGTHHEIYGYYLI
AYRQKRINLDSPLWLRWRLDQRVIASREAPIEVHYESLGTHHEIYGYYLI
Subjt: -----------------------------------AYRQKRINLDSPLWLRWRLDQRVIASREAPIEVHYESLGTHHEIYGYYLI
|
|
| BBN69361.1 hypothetical protein Prudu_904S000200, partial [Prunus dulcis] | 5.2e-73 | 66.81 | Show/hide |
Query: APTLHRLGIQAFQPILVEGRAICLHPLVCKGFNADFDGDQMAVHVPLSLEAQAEARLLMFSHMNLLSSAIGDPISVPTQDMLIGLYVLTSGNRR------
APTLHRLGIQAFQPILVEG AICLHPLVCKGFNADFDGDQMAVHVPLSLEAQAEARLLMFSHMNLLS AIGDPISVPTQDMLIGLYVLTSGNRR
Subjt: APTLHRLGIQAFQPILVEGRAICLHPLVCKGFNADFDGDQMAVHVPLSLEAQAEARLLMFSHMNLLSSAIGDPISVPTQDMLIGLYVLTSGNRR------
Query: -------------------------------------AYRQKRINLDSPLWLRWRLDQRVIASREAPIEVHYESLGTHHEIYGYYLI--------KSKRL
AYRQKRINLDSPLWLRWRLDQRVI SRE PIEVHYESLGT+HEIYG+YLI KSKR
Subjt: -------------------------------------AYRQKRINLDSPLWLRWRLDQRVIASREAPIEVHYESLGTHHEIYGYYLI--------KSKRL
Query: YKDFAGPAHMVPNPSFTARTTGVSNPIRSPSF
K FA P HMVPN + R+ ++ R SF
Subjt: YKDFAGPAHMVPNPSFTARTTGVSNPIRSPSF
|
|
| BBN70076.1 hypothetical protein Prudu_1399S000100, partial [Prunus dulcis] | 5.2e-73 | 66.81 | Show/hide |
Query: APTLHRLGIQAFQPILVEGRAICLHPLVCKGFNADFDGDQMAVHVPLSLEAQAEARLLMFSHMNLLSSAIGDPISVPTQDMLIGLYVLTSGNRR------
APTLHRLGIQAFQPILVEG AICLHPLVCKGFNADFDGDQMAVHVPLSLEAQAEARLLMFSHMNLLS AIGDPISVPTQDMLIGLYVLTSGNRR
Subjt: APTLHRLGIQAFQPILVEGRAICLHPLVCKGFNADFDGDQMAVHVPLSLEAQAEARLLMFSHMNLLSSAIGDPISVPTQDMLIGLYVLTSGNRR------
Query: -------------------------------------AYRQKRINLDSPLWLRWRLDQRVIASREAPIEVHYESLGTHHEIYGYYLI--------KSKRL
AYRQKRINLDSPLWLRWRLDQRVI SRE PIEVHYESLGT+HEIYG+YLI KSKR
Subjt: -------------------------------------AYRQKRINLDSPLWLRWRLDQRVIASREAPIEVHYESLGTHHEIYGYYLI--------KSKRL
Query: YKDFAGPAHMVPNPSFTARTTGVSNPIRSPSF
K FA P HMVPN + R+ ++ R SF
Subjt: YKDFAGPAHMVPNPSFTARTTGVSNPIRSPSF
|
|
| EXB81187.1 DNA-directed RNA polymerase subunit beta' [Morus notabilis] | 6.4e-71 | 84.76 | Show/hide |
Query: PTAWEVEEPKRKEIRGTL-PAPTLHRLGIQAFQPILVEGRAICLHPLVCKGFNADFDGDQMAVHVPLSLEAQAEARLLMFSHMNLLSSAIGDPISVPTQD
P WE+ + + L APTLHRLGIQAFQPILVEG AICLHPLVCKGFNADFDGDQMAVHVPLSLEAQAEARLLMFSH NLLS AIGDPISVPTQD
Subjt: PTAWEVEEPKRKEIRGTL-PAPTLHRLGIQAFQPILVEGRAICLHPLVCKGFNADFDGDQMAVHVPLSLEAQAEARLLMFSHMNLLSSAIGDPISVPTQD
Query: MLIGLYVLTSGNRRAYRQKRINLDSPLWLRWRLDQRVIASREAPIEVHYESLGTHHEIYGYYLI
MLIGLYVLTSGNRRAYRQKRI+LDSPLWLRWRLDQRVI SREAPIEVHY+SLGT+HEIYG+ LI
Subjt: MLIGLYVLTSGNRRAYRQKRINLDSPLWLRWRLDQRVIASREAPIEVHYESLGTHHEIYGYYLI
|
|
| YP_009752741.1 RNA polymerase beta' subunit [Cyclantheropsis parviflora] | 2.4e-70 | 77.84 | Show/hide |
Query: APTLHRLGIQAFQPILVEGRAICLHPLVCKGFNADFDGDQMAVHVPLSLEAQAEARLLMFSHMNLLSSAIGDPISVPTQDMLIGLYVLTSGNRR------
APTLHRLGIQAFQPILVEGRAICLHPLVCKGFNADFDGDQMAVHVPLSLEAQAEARLLMFSHMNLLSSAIGDPISVPTQDMLIGLYVLTSGNRR
Subjt: APTLHRLGIQAFQPILVEGRAICLHPLVCKGFNADFDGDQMAVHVPLSLEAQAEARLLMFSHMNLLSSAIGDPISVPTQDMLIGLYVLTSGNRR------
Query: -----------------------------------AYRQKRINLDSPLWLRWRLDQRVIASREAPIEVHYESLGTHHEIYGYYLI
AYRQKRINLDSPLWLRWRLDQRVIASREAPIEVHYESLGTHHEIYGYYLI
Subjt: -----------------------------------AYRQKRINLDSPLWLRWRLDQRVIASREAPIEVHYESLGTHHEIYGYYLI
|
|
| TrEMBL top hits | e value | %identity | Alignment |
|---|
| A0A218KG20 DNA-directed RNA polymerase subunit beta' | 1.2e-70 | 77.84 | Show/hide |
Query: APTLHRLGIQAFQPILVEGRAICLHPLVCKGFNADFDGDQMAVHVPLSLEAQAEARLLMFSHMNLLSSAIGDPISVPTQDMLIGLYVLTSGNRR------
APTLHRLGIQAFQPILVEGRAICLHPLVCKGFNADFDGDQMAVHVPLSLEAQAEARLLMFSHMNLLSSAIGDPISVPTQDMLIGLYVLTSGNRR
Subjt: APTLHRLGIQAFQPILVEGRAICLHPLVCKGFNADFDGDQMAVHVPLSLEAQAEARLLMFSHMNLLSSAIGDPISVPTQDMLIGLYVLTSGNRR------
Query: -----------------------------------AYRQKRINLDSPLWLRWRLDQRVIASREAPIEVHYESLGTHHEIYGYYLI
AYRQKRINLDSPLWLRWRLDQRVIASREAPIEVHYESLGTHHEIYGYYLI
Subjt: -----------------------------------AYRQKRINLDSPLWLRWRLDQRVIASREAPIEVHYESLGTHHEIYGYYLI
|
|
| A0A5H2Y107 Multifunctional fusion protein (Fragment) | 2.5e-73 | 66.81 | Show/hide |
Query: APTLHRLGIQAFQPILVEGRAICLHPLVCKGFNADFDGDQMAVHVPLSLEAQAEARLLMFSHMNLLSSAIGDPISVPTQDMLIGLYVLTSGNRR------
APTLHRLGIQAFQPILVEG AICLHPLVCKGFNADFDGDQMAVHVPLSLEAQAEARLLMFSHMNLLS AIGDPISVPTQDMLIGLYVLTSGNRR
Subjt: APTLHRLGIQAFQPILVEGRAICLHPLVCKGFNADFDGDQMAVHVPLSLEAQAEARLLMFSHMNLLSSAIGDPISVPTQDMLIGLYVLTSGNRR------
Query: -------------------------------------AYRQKRINLDSPLWLRWRLDQRVIASREAPIEVHYESLGTHHEIYGYYLI--------KSKRL
AYRQKRINLDSPLWLRWRLDQRVI SRE PIEVHYESLGT+HEIYG+YLI KSKR
Subjt: -------------------------------------AYRQKRINLDSPLWLRWRLDQRVIASREAPIEVHYESLGTHHEIYGYYLI--------KSKRL
Query: YKDFAGPAHMVPNPSFTARTTGVSNPIRSPSF
K FA P HMVPN + R+ ++ R SF
Subjt: YKDFAGPAHMVPNPSFTARTTGVSNPIRSPSF
|
|
| A0A5H2Y863 DNA-directed RNA polymerase subunit (Fragment) | 2.5e-73 | 66.81 | Show/hide |
Query: APTLHRLGIQAFQPILVEGRAICLHPLVCKGFNADFDGDQMAVHVPLSLEAQAEARLLMFSHMNLLSSAIGDPISVPTQDMLIGLYVLTSGNRR------
APTLHRLGIQAFQPILVEG AICLHPLVCKGFNADFDGDQMAVHVPLSLEAQAEARLLMFSHMNLLS AIGDPISVPTQDMLIGLYVLTSGNRR
Subjt: APTLHRLGIQAFQPILVEGRAICLHPLVCKGFNADFDGDQMAVHVPLSLEAQAEARLLMFSHMNLLSSAIGDPISVPTQDMLIGLYVLTSGNRR------
Query: -------------------------------------AYRQKRINLDSPLWLRWRLDQRVIASREAPIEVHYESLGTHHEIYGYYLI--------KSKRL
AYRQKRINLDSPLWLRWRLDQRVI SRE PIEVHYESLGT+HEIYG+YLI KSKR
Subjt: -------------------------------------AYRQKRINLDSPLWLRWRLDQRVIASREAPIEVHYESLGTHHEIYGYYLI--------KSKRL
Query: YKDFAGPAHMVPNPSFTARTTGVSNPIRSPSF
K FA P HMVPN + R+ ++ R SF
Subjt: YKDFAGPAHMVPNPSFTARTTGVSNPIRSPSF
|
|
| A0A6M3S6B8 DNA-directed RNA polymerase subunit beta' | 1.2e-70 | 77.84 | Show/hide |
Query: APTLHRLGIQAFQPILVEGRAICLHPLVCKGFNADFDGDQMAVHVPLSLEAQAEARLLMFSHMNLLSSAIGDPISVPTQDMLIGLYVLTSGNRR------
APTLHRLGIQAFQPILVEGRAICLHPLVCKGFNADFDGDQMAVHVPLSLEAQAEARLLMFSHMNLLSSAIGDPISVPTQDMLIGLYVLTSGNRR
Subjt: APTLHRLGIQAFQPILVEGRAICLHPLVCKGFNADFDGDQMAVHVPLSLEAQAEARLLMFSHMNLLSSAIGDPISVPTQDMLIGLYVLTSGNRR------
Query: -----------------------------------AYRQKRINLDSPLWLRWRLDQRVIASREAPIEVHYESLGTHHEIYGYYLI
AYRQKRINLDSPLWLRWRLDQRVIASREAPIEVHYESLGTHHEIYGYYLI
Subjt: -----------------------------------AYRQKRINLDSPLWLRWRLDQRVIASREAPIEVHYESLGTHHEIYGYYLI
|
|
| W9RM49 DNA-directed RNA polymerase subunit | 3.1e-71 | 84.76 | Show/hide |
Query: PTAWEVEEPKRKEIRGTL-PAPTLHRLGIQAFQPILVEGRAICLHPLVCKGFNADFDGDQMAVHVPLSLEAQAEARLLMFSHMNLLSSAIGDPISVPTQD
P WE+ + + L APTLHRLGIQAFQPILVEG AICLHPLVCKGFNADFDGDQMAVHVPLSLEAQAEARLLMFSH NLLS AIGDPISVPTQD
Subjt: PTAWEVEEPKRKEIRGTL-PAPTLHRLGIQAFQPILVEGRAICLHPLVCKGFNADFDGDQMAVHVPLSLEAQAEARLLMFSHMNLLSSAIGDPISVPTQD
Query: MLIGLYVLTSGNRRAYRQKRINLDSPLWLRWRLDQRVIASREAPIEVHYESLGTHHEIYGYYLI
MLIGLYVLTSGNRRAYRQKRI+LDSPLWLRWRLDQRVI SREAPIEVHY+SLGT+HEIYG+ LI
Subjt: MLIGLYVLTSGNRRAYRQKRINLDSPLWLRWRLDQRVIASREAPIEVHYESLGTHHEIYGYYLI
|
|
| SwissProt top hits | e value | %identity | Alignment |
|---|
| B2XWP0 DNA-directed RNA polymerase subunit beta' | 1.3e-69 | 68.6 | Show/hide |
Query: SNPTAWEV-EEPKRKEIRGTLPAPTLHRLGIQAFQPILVEGRAICLHPLVCKGFNADFDGDQMAVHVPLSLEAQAEARLLMFSHMNLLSSAIGDPISVPT
+ P WE+ +E R APTLHRLGIQAFQP LVEGRAICLHPLVCKGFNADFDGDQMAVHVPLSLEAQAEARLLMFSHMNLLS AIGDPISVPT
Subjt: SNPTAWEV-EEPKRKEIRGTLPAPTLHRLGIQAFQPILVEGRAICLHPLVCKGFNADFDGDQMAVHVPLSLEAQAEARLLMFSHMNLLSSAIGDPISVPT
Query: QDMLIGLYVLTSGNRR-----------------------------------------AYRQKRINLDSPLWLRWRLDQRVIASREAPIEVHYESLGTHHE
QDMLIGLYVLTSGNRR AYRQKRINLDSPLWLRW+LD RV+ASREAPIEVHYESLGT+HE
Subjt: QDMLIGLYVLTSGNRR-----------------------------------------AYRQKRINLDSPLWLRWRLDQRVIASREAPIEVHYESLGTHHE
Query: IYGYYLI
IYG YLI
Subjt: IYGYYLI
|
|
| Q09MI7 DNA-directed RNA polymerase subunit beta' | 5.6e-70 | 74.05 | Show/hide |
Query: APTLHRLGIQAFQPILVEGRAICLHPLVCKGFNADFDGDQMAVHVPLSLEAQAEARLLMFSHMNLLSSAIGDPISVPTQDMLIGLYVLTSGNRR------
APTLHRLG+QAFQPILVEGRAICLHPLVCKGFNADFDGDQMAVHVPLSLEAQAEARLLMFSHMNLLS IGDPIS+PTQDMLIGLYVLTSGNRR
Subjt: APTLHRLGIQAFQPILVEGRAICLHPLVCKGFNADFDGDQMAVHVPLSLEAQAEARLLMFSHMNLLSSAIGDPISVPTQDMLIGLYVLTSGNRR------
Query: -----------------------------------AYRQKRINLDSPLWLRWRLDQRVIASREAPIEVHYESLGTHHEIYGYYLI
AYRQKRINLDSPLWLRWRLDQR+IASREAPIEVHYESLGT HEIYG+YLI
Subjt: -----------------------------------AYRQKRINLDSPLWLRWRLDQRVIASREAPIEVHYESLGTHHEIYGYYLI
|
|
| Q2L8Z4 DNA-directed RNA polymerase subunit beta' | 3.7e-69 | 69.27 | Show/hide |
Query: PTAWEV-EEPKRKEIRGTLPAPTLHRLGIQAFQPILVEGRAICLHPLVCKGFNADFDGDQMAVHVPLSLEAQAEARLLMFSHMNLLSSAIGDPISVPTQD
P WE+ +E R APTLHRLGIQAFQPILVEGRAICLHPLVCKGFNADFDGDQMAVHVPLSLEAQAEARLLMFSHMNLLS AIGDPISVPTQD
Subjt: PTAWEV-EEPKRKEIRGTLPAPTLHRLGIQAFQPILVEGRAICLHPLVCKGFNADFDGDQMAVHVPLSLEAQAEARLLMFSHMNLLSSAIGDPISVPTQD
Query: MLIGLYVLTSGNRR-----------------------------------------AYRQKRINLDSPLWLRWRLDQRVIASREAPIEVHYESLGTHHEIY
MLIGLYVLTSGNRR AYRQKRINLDSPLWLRW+L+Q VIASREAPIEVHYES GT+HEIY
Subjt: MLIGLYVLTSGNRR-----------------------------------------AYRQKRINLDSPLWLRWRLDQRVIASREAPIEVHYESLGTHHEIY
Query: GYYLI
G+YLI
Subjt: GYYLI
|
|
| Q4VZP2 DNA-directed RNA polymerase subunit beta' | 3.2e-73 | 77.84 | Show/hide |
Query: APTLHRLGIQAFQPILVEGRAICLHPLVCKGFNADFDGDQMAVHVPLSLEAQAEARLLMFSHMNLLSSAIGDPISVPTQDMLIGLYVLTSGNRR------
APTLHRLGIQAFQPILVEGRAICLHPLVCKGFNADFDGDQMAVHVPLSLEAQAEARLLMFSHMNLLSSAIGDPISVPTQDMLIGLYVLTSGNRR
Subjt: APTLHRLGIQAFQPILVEGRAICLHPLVCKGFNADFDGDQMAVHVPLSLEAQAEARLLMFSHMNLLSSAIGDPISVPTQDMLIGLYVLTSGNRR------
Query: -----------------------------------AYRQKRINLDSPLWLRWRLDQRVIASREAPIEVHYESLGTHHEIYGYYLI
AYRQKRINLDSPLWLRWRLDQRVIASREAPIEVHYESLGTHHEIYGYYLI
Subjt: -----------------------------------AYRQKRINLDSPLWLRWRLDQRVIASREAPIEVHYESLGTHHEIYGYYLI
|
|
| Q8S8Y0 DNA-directed RNA polymerase subunit beta' | 3.7e-69 | 73.66 | Show/hide |
Query: APTLHRLGIQAFQPILVEGRAICLHPLVCKGFNADFDGDQMAVHVPLSLEAQAEARLLMFSHMNLLSSAIGDPISVPTQDMLIGLYVLTSGNRR------
APTLHRLGIQAFQP+LVEGRAICLHPLVCKGFNADFDGDQMAVHVPLSLEAQ EARLLMFSHMNLLS AIGDPISVPTQDMLIGLYVLTSGNRR
Subjt: APTLHRLGIQAFQPILVEGRAICLHPLVCKGFNADFDGDQMAVHVPLSLEAQAEARLLMFSHMNLLSSAIGDPISVPTQDMLIGLYVLTSGNRR------
Query: ------------------------------------AYRQKRINLDSPLWLRWRLDQRVIASREAPIEVHYESLGTHHEIYGYYLI
AYRQKRINLDSPLWLRWRLDQRVIASRE PIEVHYESLGT +EIYG+YLI
Subjt: ------------------------------------AYRQKRINLDSPLWLRWRLDQRVIASREAPIEVHYESLGTHHEIYGYYLI
|
|
| Arabidopsis top hits | e value | %identity | Alignment |
|---|
| AT5G60040.1 nuclear RNA polymerase C1 | 3.6e-11 | 37.5 | Show/hide |
Query: PTLHRLGIQAFQPILVEGRAICLHPLVCKGFNADFDGDQMAVHVPLSLEAQAEARLLMFSHMNLLSSAIGDPISVPTQDMLIGLYVLT
P+LHR+ I + ++ R + + VC +NADFDGD+M +HVP + EA+ EA LM NL + G+ + TQD L +++T
Subjt: PTLHRLGIQAFQPILVEGRAICLHPLVCKGFNADFDGDQMAVHVPLSLEAQAEARLLMFSHMNLLSSAIGDPISVPTQDMLIGLYVLT
|
|
| AT5G60040.2 nuclear RNA polymerase C1 | 3.6e-11 | 37.5 | Show/hide |
Query: PTLHRLGIQAFQPILVEGRAICLHPLVCKGFNADFDGDQMAVHVPLSLEAQAEARLLMFSHMNLLSSAIGDPISVPTQDMLIGLYVLT
P+LHR+ I + ++ R + + VC +NADFDGD+M +HVP + EA+ EA LM NL + G+ + TQD L +++T
Subjt: PTLHRLGIQAFQPILVEGRAICLHPLVCKGFNADFDGDQMAVHVPLSLEAQAEARLLMFSHMNLLSSAIGDPISVPTQDMLIGLYVLT
|
|
| AT5G64520.1 homolog of X-ray repair cross complementing 2 (XRCC2) | 8.8e-10 | 38.96 | Show/hide |
Query: RKGFSLANVLEAAVEEVRKLLLVHPSIVIATKSTIFGDRSSDIVRREKILAESELRHVTTNSGPQVLYREYMPSAWQ
RK SL NV+E V+E++KLLLVH +V+ATK TI+ ++ K+ + + Q +RE+MPS+WQ
Subjt: RKGFSLANVLEAAVEEVRKLLLVHPSIVIATKSTIFGDRSSDIVRREKILAESELRHVTTNSGPQVLYREYMPSAWQ
|
|
| AT5G64520.2 homolog of X-ray repair cross complementing 2 (XRCC2) | 8.8e-10 | 38.96 | Show/hide |
Query: RKGFSLANVLEAAVEEVRKLLLVHPSIVIATKSTIFGDRSSDIVRREKILAESELRHVTTNSGPQVLYREYMPSAWQ
RK SL NV+E V+E++KLLLVH +V+ATK TI+ ++ K+ + + Q +RE+MPS+WQ
Subjt: RKGFSLANVLEAAVEEVRKLLLVHPSIVIATKSTIFGDRSSDIVRREKILAESELRHVTTNSGPQVLYREYMPSAWQ
|
|
| ATCG00180.1 DNA-directed RNA polymerase family protein | 5.4e-68 | 71.35 | Show/hide |
Query: APTLHRLGIQAFQPILVEGRAICLHPLVCKGFNADFDGDQMAVHVPLSLEAQAEARLLMFSHMNLLSSAIGDPISVPTQDMLIGLYVLTSGNRR------
APTLHRLGIQ+FQPILVEGR ICLHPLVCKGFNADFDGDQMAVHVPLSLEAQAEARLLMFSHMNLLS AIGDPISVPTQDMLIGLYVLTSG RR
Subjt: APTLHRLGIQAFQPILVEGRAICLHPLVCKGFNADFDGDQMAVHVPLSLEAQAEARLLMFSHMNLLSSAIGDPISVPTQDMLIGLYVLTSGNRR------
Query: -----------------------------------AYRQKRINLDSPLWLRWRLDQRVIASREAPIEVHYESLGTHHEIYGYYLI
AYRQK+INLDSPLWLRW+LDQRVIASRE PIEVHYES G +HEIY +YLI
Subjt: -----------------------------------AYRQKRINLDSPLWLRWRLDQRVIASREAPIEVHYESLGTHHEIYGYYLI
|
|
