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Sgr018442 (gene) of Monk fruit (Qingpiguo) v1 genome

Gene IDSgr018442
OrganismSiraitia grosvenorii cv. Qingpiguo (Monk fruit (Qingpiguo) v1)
DescriptionPSII 6.1 kDa protein
Genome locationtig00153201:345629..346646
RNA-Seq ExpressionSgr018442
SyntenySgr018442
Gene Ontology termsGO:0042549 - photosystem II stabilization (biological process)
GO:0009523 - photosystem II (cellular component)
GO:0009535 - chloroplast thylakoid membrane (cellular component)
GO:0016021 - integral component of membrane (cellular component)
InterPro domainsIPR009806 - Photosystem II PsbW, class 2


Homology Show/hide homology
GenBank top hitse value%identityAlignment
KAG6575946.1 Photosystem II reaction center W protein, chloroplastic, partial [Cucurbita argyrosperma subsp. sororia]1.9e-4783.22Show/hide
Query:  MAAVTSAAAASSASVVRAGL---RPVPVASSAPILLGLPALGKKGGVRCSMEGKASGEAENKSSSLGMGASSLIAAACAATMSSPAAMALVDERLSTEGT
        MAAVTSAAAA+    VR+ L   RP+P AS AP LLGLPALGKKGGVRCSMEGKA+G+ ENKSS+LGMGA SL+AAA AA+MSSP AMALVDERLSTEGT
Subjt:  MAAVTSAAAASSASVVRAGL---RPVPVASSAPILLGLPALGKKGGVRCSMEGKASGEAENKSSSLGMGASSLIAAACAATMSSPAAMALVDERLSTEGT

Query:  GLPFGLSNNLLGWILFGVFGFIWAFYIIYTSTLEEDEESGLSL
        GLPFGLSNNLLGWIL GVFGFIWAFYIIYTSTLEEDEESGLSL
Subjt:  GLPFGLSNNLLGWILFGVFGFIWAFYIIYTSTLEEDEESGLSL

XP_008451280.1 PREDICTED: photosystem II reaction center W protein, chloroplastic-like [Cucumis melo]9.4e-4782.14Show/hide
Query:  MAAVTSAAAASSASVVRAGLRPVPVASSAPILLGLPALGKKGGVRCSMEGKASGEAENKSSSLGMGASSLIAAACAATMSSPAAMALVDERLSTEGTGLP
        MAAVTSAAAA+  + +      +P AS AP LLGLPALGKKGGVRCSMEGK +GE ENKSS+LGMGA SLIAAACAATMSSP AMALVDERLSTEGTGLP
Subjt:  MAAVTSAAAASSASVVRAGLRPVPVASSAPILLGLPALGKKGGVRCSMEGKASGEAENKSSSLGMGASSLIAAACAATMSSPAAMALVDERLSTEGTGLP

Query:  FGLSNNLLGWILFGVFGFIWAFYIIYTSTLEEDEESGLSL
        FGLSNNLLGWIL GVFG IWAFYI+YTSTLEEDEESGLSL
Subjt:  FGLSNNLLGWILFGVFGFIWAFYIIYTSTLEEDEESGLSL

XP_022954252.1 photosystem II reaction center W protein, chloroplastic [Cucurbita moschata]4.2e-4782.52Show/hide
Query:  MAAVTSAAAASSASVVRAGL---RPVPVASSAPILLGLPALGKKGGVRCSMEGKASGEAENKSSSLGMGASSLIAAACAATMSSPAAMALVDERLSTEGT
        MAAVTSAAAA+    VR+ L   RP+P AS +P LLGLPALGKKGGVRCSMEGKA+G+ ENKSS+LGMGA SL+AAA AA+MSSP AMALVDERLSTEGT
Subjt:  MAAVTSAAAASSASVVRAGL---RPVPVASSAPILLGLPALGKKGGVRCSMEGKASGEAENKSSSLGMGASSLIAAACAATMSSPAAMALVDERLSTEGT

Query:  GLPFGLSNNLLGWILFGVFGFIWAFYIIYTSTLEEDEESGLSL
        GLPFGLSNNLLGWIL GVFGFIWAFYIIYTSTLEEDEESGLSL
Subjt:  GLPFGLSNNLLGWILFGVFGFIWAFYIIYTSTLEEDEESGLSL

XP_023548627.1 photosystem II reaction center W protein, chloroplastic [Cucurbita pepo subsp. pepo]2.1e-4681.82Show/hide
Query:  MAAVTSAAAASSASVVRAGL---RPVPVASSAPILLGLPALGKKGGVRCSMEGKASGEAENKSSSLGMGASSLIAAACAATMSSPAAMALVDERLSTEGT
        MAAVTSAA A+    VR+ L   RP+P AS AP LLGLPALGKKGGVRCSMEGK +G+ ENKSS+LGMGA SL+AAA AA+MSSP AMALVDERLSTEGT
Subjt:  MAAVTSAAAASSASVVRAGL---RPVPVASSAPILLGLPALGKKGGVRCSMEGKASGEAENKSSSLGMGASSLIAAACAATMSSPAAMALVDERLSTEGT

Query:  GLPFGLSNNLLGWILFGVFGFIWAFYIIYTSTLEEDEESGLSL
        GLPFGLSNNLLGWIL GVFGFIWAFYIIYTSTLEEDEESGLSL
Subjt:  GLPFGLSNNLLGWILFGVFGFIWAFYIIYTSTLEEDEESGLSL

XP_038900227.1 photosystem II reaction center W protein, chloroplastic-like [Benincasa hispida]2.9e-4883.57Show/hide
Query:  MAAVTSAAAASSASVVRAGLRPVPVASSAPILLGLPALGKKGGVRCSMEGKASGEAENKSSSLGMGASSLIAAACAATMSSPAAMALVDERLSTEGTGLP
        MAAVTSAA A++ + +    RP+P AS AP LLGLPALGKKGGVRCSMEGK +GE ENKSS+LGMGA SLIAAACAATMSSP AMALVDERLSTEGTGLP
Subjt:  MAAVTSAAAASSASVVRAGLRPVPVASSAPILLGLPALGKKGGVRCSMEGKASGEAENKSSSLGMGASSLIAAACAATMSSPAAMALVDERLSTEGTGLP

Query:  FGLSNNLLGWILFGVFGFIWAFYIIYTSTLEEDEESGLSL
        FGLSNNLLGWILFGVFG IWAFYI+YTSTLEEDEESGLSL
Subjt:  FGLSNNLLGWILFGVFGFIWAFYIIYTSTLEEDEESGLSL

TrEMBL top hitse value%identityAlignment
A0A0A0K4V6 PSII 6.1 kDa protein1.7e-4682.52Show/hide
Query:  MAAVTSAAAASSASVVRAGL---RPVPVASSAPILLGLPALGKKGGVRCSMEGKASGEAENKSSSLGMGASSLIAAACAATMSSPAAMALVDERLSTEGT
        MAAVTSAAAA+    VR  L   R +P AS AP LLGLPALGKKGGVRCSMEGK +GE ENKSS+LGMGA SLIAAACAATMSSP AMALVDERLSTEGT
Subjt:  MAAVTSAAAASSASVVRAGL---RPVPVASSAPILLGLPALGKKGGVRCSMEGKASGEAENKSSSLGMGASSLIAAACAATMSSPAAMALVDERLSTEGT

Query:  GLPFGLSNNLLGWILFGVFGFIWAFYIIYTSTLEEDEESGLSL
        GLPFGLSNNLLGWIL GVF  IWAFYI+YTSTLEEDEESGLSL
Subjt:  GLPFGLSNNLLGWILFGVFGFIWAFYIIYTSTLEEDEESGLSL

A0A1S3BQI5 PSII 6.1 kDa protein4.5e-4782.14Show/hide
Query:  MAAVTSAAAASSASVVRAGLRPVPVASSAPILLGLPALGKKGGVRCSMEGKASGEAENKSSSLGMGASSLIAAACAATMSSPAAMALVDERLSTEGTGLP
        MAAVTSAAAA+  + +      +P AS AP LLGLPALGKKGGVRCSMEGK +GE ENKSS+LGMGA SLIAAACAATMSSP AMALVDERLSTEGTGLP
Subjt:  MAAVTSAAAASSASVVRAGLRPVPVASSAPILLGLPALGKKGGVRCSMEGKASGEAENKSSSLGMGASSLIAAACAATMSSPAAMALVDERLSTEGTGLP

Query:  FGLSNNLLGWILFGVFGFIWAFYIIYTSTLEEDEESGLSL
        FGLSNNLLGWIL GVFG IWAFYI+YTSTLEEDEESGLSL
Subjt:  FGLSNNLLGWILFGVFGFIWAFYIIYTSTLEEDEESGLSL

A0A5D3DRC0 PSII 6.1 kDa protein3.8e-4681.43Show/hide
Query:  MAAVTSAAAASSASVVRAGLRPVPVASSAPILLGLPALGKKGGVRCSMEGKASGEAENKSSSLGMGASSLIAAACAATMSSPAAMALVDERLSTEGTGLP
        MAAVTSAAAA+  + +      +P AS AP LLGLPALGKKGGVRCSMEGK +GE ENKSS+L MGA SLIAAACAATMSSP AMALVDERLSTEGTGLP
Subjt:  MAAVTSAAAASSASVVRAGLRPVPVASSAPILLGLPALGKKGGVRCSMEGKASGEAENKSSSLGMGASSLIAAACAATMSSPAAMALVDERLSTEGTGLP

Query:  FGLSNNLLGWILFGVFGFIWAFYIIYTSTLEEDEESGLSL
        FGLSNNLLGWIL GVFG IWAFYI+YTSTLEEDEESGLSL
Subjt:  FGLSNNLLGWILFGVFGFIWAFYIIYTSTLEEDEESGLSL

A0A6J1GQI7 PSII 6.1 kDa protein2.0e-4782.52Show/hide
Query:  MAAVTSAAAASSASVVRAGL---RPVPVASSAPILLGLPALGKKGGVRCSMEGKASGEAENKSSSLGMGASSLIAAACAATMSSPAAMALVDERLSTEGT
        MAAVTSAAAA+    VR+ L   RP+P AS +P LLGLPALGKKGGVRCSMEGKA+G+ ENKSS+LGMGA SL+AAA AA+MSSP AMALVDERLSTEGT
Subjt:  MAAVTSAAAASSASVVRAGL---RPVPVASSAPILLGLPALGKKGGVRCSMEGKASGEAENKSSSLGMGASSLIAAACAATMSSPAAMALVDERLSTEGT

Query:  GLPFGLSNNLLGWILFGVFGFIWAFYIIYTSTLEEDEESGLSL
        GLPFGLSNNLLGWIL GVFGFIWAFYIIYTSTLEEDEESGLSL
Subjt:  GLPFGLSNNLLGWILFGVFGFIWAFYIIYTSTLEEDEESGLSL

A0A6J1JTT6 PSII 6.1 kDa protein5.0e-4682.52Show/hide
Query:  MAAVTSAAAASSASVVRAGL---RPVPVASSAPILLGLPALGKKGGVRCSMEGKASGEAENKSSSLGMGASSLIAAACAATMSSPAAMALVDERLSTEGT
        MAAVTSAAAA+    VR+ L   RP P AS AP LLGLPAL KKG VRCSMEGKA+GE ENKSS+LGMGA SL+AAA AA+MSSP AMALVDERLSTEGT
Subjt:  MAAVTSAAAASSASVVRAGL---RPVPVASSAPILLGLPALGKKGGVRCSMEGKASGEAENKSSSLGMGASSLIAAACAATMSSPAAMALVDERLSTEGT

Query:  GLPFGLSNNLLGWILFGVFGFIWAFYIIYTSTLEEDEESGLSL
        GLPFGLSNNLLGWIL GVFGFIWAFYIIYTSTLEEDEESGLSL
Subjt:  GLPFGLSNNLLGWILFGVFGFIWAFYIIYTSTLEEDEESGLSL

SwissProt top hitse value%identityAlignment
Q39194 Photosystem II reaction center W protein, chloroplastic4.0e-3263.12Show/hide
Query:  MAAVTSAAAASSASVVRAGLRPVPVASSAPILLGLPALG-KKGGVRCSMEGKASGEAENKSSSLGMGASSLIAAACAATMSSPAAMALVDERLSTEGTGL
        MA+ T++A+  SA+     L+P  VA SAP+ LGLP +G KKGGVRCSME K     +   S +G G S+   AA  A MS+P AMALVDER+STEGTGL
Subjt:  MAAVTSAAAASSASVVRAGLRPVPVASSAPILLGLPALG-KKGGVRCSMEGKASGEAENKSSSLGMGASSLIAAACAATMSSPAAMALVDERLSTEGTGL

Query:  PFGLSNNLLGWILFGVFGFIWAFYIIYTSTLEEDEESGLSL
        PFGLSNNLLGWILFGVFG IW F+ +YTS+LEEDEESGLSL
Subjt:  PFGLSNNLLGWILFGVFGFIWAFYIIYTSTLEEDEESGLSL

Q41387 Photosystem II reaction center W protein, chloroplastic6.3e-3060.28Show/hide
Query:  MAAVTSAAAASSASVVRAGL-RPVPVASSAPILLGLPALGKKGGVRCSMEGKASGEAENKSSSLGMGASSLIAAACAATMSSPAAMALVDERLSTEGTGL
        MA +T  A++S++ V RA L     V  S+  +LGLP++ K+  V CS+E K S      +++  MGA SL+AAA AAT+S+P AMALVDER+STEGTGL
Subjt:  MAAVTSAAAASSASVVRAGL-RPVPVASSAPILLGLPALGKKGGVRCSMEGKASGEAENKSSSLGMGASSLIAAACAATMSSPAAMALVDERLSTEGTGL

Query:  PFGLSNNLLGWILFGVFGFIWAFYIIYTSTLEEDEESGLSL
        PFGLSNNLLGWILFGVFG IWA Y +Y S LEEDEESGLSL
Subjt:  PFGLSNNLLGWILFGVFGFIWAFYIIYTSTLEEDEESGLSL

Q5ZBY9 Photosystem II reaction center W protein, chloroplastic6.6e-1953.33Show/hide
Query:  TSAAAASSASVVRAGLRPVPVASSAPILLGLPALGKKGG--VRCSMEGKASGEAENKSSSLGMGASSLIAAACAATMSSPAAMALVDERLSTEGTGLPFG
        T +AAA+++ V RA L       + P  LGLP +  +    VRC+   +A+  A   ++  G GAS L  AA AA      AMALVDER+STEGTGL  G
Subjt:  TSAAAASSASVVRAGLRPVPVASSAPILLGLPALGKKGG--VRCSMEGKASGEAENKSSSLGMGASSLIAAACAATMSSPAAMALVDERLSTEGTGLPFG

Query:  LSNNLLGWILFGVFGFIWAFYIIYTSTLEEDEESG
        LSNNLLGWIL GVFG IW+ Y IYTS LEEDEESG
Subjt:  LSNNLLGWILFGVFGFIWAFYIIYTSTLEEDEESG

Q9SPI9 Photosystem II reaction center W protein, chloroplastic1.6e-0948.48Show/hide
Query:  ATMSSPAAMALVDERLSTEGTGLPFGLSNNLLGWILFGVFGFIWAFYIIYTSTLE--EDEESGLSL
        AT+++  A ALVDER++ +GTG PFG+++ +LGW+L GVFG +WA + I    L   ED + GL L
Subjt:  ATMSSPAAMALVDERLSTEGTGLPFGLSNNLLGWILFGVFGFIWAFYIIYTSTLE--EDEESGLSL

Arabidopsis top hitse value%identityAlignment
AT2G30570.1 photosystem II reaction center W2.8e-3363.12Show/hide
Query:  MAAVTSAAAASSASVVRAGLRPVPVASSAPILLGLPALG-KKGGVRCSMEGKASGEAENKSSSLGMGASSLIAAACAATMSSPAAMALVDERLSTEGTGL
        MA+ T++A+  SA+     L+P  VA SAP+ LGLP +G KKGGVRCSME K     +   S +G G S+   AA  A MS+P AMALVDER+STEGTGL
Subjt:  MAAVTSAAAASSASVVRAGLRPVPVASSAPILLGLPALG-KKGGVRCSMEGKASGEAENKSSSLGMGASSLIAAACAATMSSPAAMALVDERLSTEGTGL

Query:  PFGLSNNLLGWILFGVFGFIWAFYIIYTSTLEEDEESGLSL
        PFGLSNNLLGWILFGVFG IW F+ +YTS+LEEDEESGLSL
Subjt:  PFGLSNNLLGWILFGVFGFIWAFYIIYTSTLEEDEESGLSL


Sequences Show/hide sequences
CDS sequenceShow/hide CDS sequence
ATGGCCGCCGTCACCTCCGCCGCCGCCGCTTCATCCGCCTCCGTCGTCCGTGCTGGTCTCCGCCCAGTGCCGGTGGCTTCATCCGCCCCAATCCTTCTCGGGTTGCCTGC
ATTGGGAAAGAAGGGAGGTGTGAGGTGTTCCATGGAAGGAAAGGCAAGCGGAGAAGCAGAAAACAAGTCAAGCAGCTTGGGGATGGGCGCATCGTCGTTGATAGCTGCGG
CGTGTGCTGCGACGATGTCGAGCCCAGCTGCCATGGCTCTGGTGGACGAGAGATTGAGCACTGAAGGGACTGGTCTTCCATTTGGTTTGAGCAACAATCTTCTTGGTTGG
ATTCTCTTTGGGGTTTTTGGTTTCATATGGGCATTCTACATCATTTACACTTCTACTCTTGAAGAGGATGAGGAATCAGGCTTATCTCTTTAA
mRNA sequenceShow/hide mRNA sequence
ATGGCCGCCGTCACCTCCGCCGCCGCCGCTTCATCCGCCTCCGTCGTCCGTGCTGGTCTCCGCCCAGTGCCGGTGGCTTCATCCGCCCCAATCCTTCTCGGGTTGCCTGC
ATTGGGAAAGAAGGGAGGTGTGAGGTGTTCCATGGAAGGAAAGGCAAGCGGAGAAGCAGAAAACAAGTCAAGCAGCTTGGGGATGGGCGCATCGTCGTTGATAGCTGCGG
CGTGTGCTGCGACGATGTCGAGCCCAGCTGCCATGGCTCTGGTGGACGAGAGATTGAGCACTGAAGGGACTGGTCTTCCATTTGGTTTGAGCAACAATCTTCTTGGTTGG
ATTCTCTTTGGGGTTTTTGGTTTCATATGGGCATTCTACATCATTTACACTTCTACTCTTGAAGAGGATGAGGAATCAGGCTTATCTCTTTAA
Protein sequenceShow/hide protein sequence
MAAVTSAAAASSASVVRAGLRPVPVASSAPILLGLPALGKKGGVRCSMEGKASGEAENKSSSLGMGASSLIAAACAATMSSPAAMALVDERLSTEGTGLPFGLSNNLLGW
ILFGVFGFIWAFYIIYTSTLEEDEESGLSL