; ; ; ; ; ; ; ; ; ; ; ; ; ; ; ; ; ; ; CuGenDBv2

Sgr019400 (gene) of Monk fruit (Qingpiguo) v1 genome

Gene IDSgr019400
OrganismSiraitia grosvenorii cv. Qingpiguo (Monk fruit (Qingpiguo) v1)
Description30-kDa cleavage and polyadenylation specificity factor 30
Genome locationtig00153347:251219..251677
RNA-Seq ExpressionSgr019400
SyntenySgr019400
Gene Ontology termsGO:0000381 - regulation of alternative mRNA splicing, via spliceosome (biological process)
GO:0005654 - nucleoplasm (cellular component)
GO:0003677 - DNA binding (molecular function)
GO:0003729 - mRNA binding (molecular function)
GO:0046872 - metal ion binding (molecular function)
GO:1990247 - N6-methyladenosine-containing RNA binding (molecular function)
InterPro domainsIPR000571 - Zinc finger, CCCH-type
IPR036855 - Zinc finger, CCCH-type superfamily


Homology Show/hide homology
GenBank top hitse value%identityAlignment
XP_008459517.1 PREDICTED: 30-kDa cleavage and polyadenylation specificity factor 30-like [Cucumis melo]1.8e-6492.7Show/hide
Query:  MEDSEGVLSFDFEGGLDAGPTNPAAT-SLPLIQSDSSAPPAASAVSNSGVGAVGPAVAAEAAGAPTGNVGSRRSFRQTVCRHWLRSLCMKGDACGFLHQY
        MEDSEGVLSFDFEGGLDAGPTNPAAT SLPLI SDSSAPPAASAVSNS  GA+GPAV+AE  GAP GNVG+RRSFRQTVCRHWLRSLCMKGDACGFLHQY
Subjt:  MEDSEGVLSFDFEGGLDAGPTNPAAT-SLPLIQSDSSAPPAASAVSNSGVGAVGPAVAAEAAGAPTGNVGSRRSFRQTVCRHWLRSLCMKGDACGFLHQY

Query:  DKSRMPICRFFRLYGECREQDCVYKHTNEDIKECNMY
        DKSRMPICRFFRLYGECREQDCVYKHTNEDIKECNMY
Subjt:  DKSRMPICRFFRLYGECREQDCVYKHTNEDIKECNMY

XP_022140120.1 30-kDa cleavage and polyadenylation specificity factor 30 [Momordica charantia]2.9e-6593.38Show/hide
Query:  MEDSEGVLSFDFEGGLDAGPTNPAATSLPLIQSDSSAPPAASAVSNSGVGAVGPAVAAEAAGAPTGNVGSRRSFRQTVCRHWLRSLCMKGDACGFLHQYD
        MED EGVLSFDFEGGLDAGPTNPAATSLPLIQSD SAPPAASAVS+SG GAVG AV  EA GA TGNVGSRRSFRQTVCRHWLRSLCMKGDACGFLHQYD
Subjt:  MEDSEGVLSFDFEGGLDAGPTNPAATSLPLIQSDSSAPPAASAVSNSGVGAVGPAVAAEAAGAPTGNVGSRRSFRQTVCRHWLRSLCMKGDACGFLHQYD

Query:  KSRMPICRFFRLYGECREQDCVYKHTNEDIKECNMY
        KSRMPICRFFRLYGECREQDCVYKHTNEDIKECNMY
Subjt:  KSRMPICRFFRLYGECREQDCVYKHTNEDIKECNMY

XP_022994747.1 30-kDa cleavage and polyadenylation specificity factor 30-like [Cucurbita maxima]8.3e-6591.91Show/hide
Query:  MEDSEGVLSFDFEGGLDAGPTNPAATSLPLIQSDSSAPPAASAVSNSGVGAVGPAVAAEAAGAPTGNVGSRRSFRQTVCRHWLRSLCMKGDACGFLHQYD
        MEDSEG LSFDFEGGLDAGPTNPAA SLPLI SDSS PPAASAVSNSG GA GP V A+A+GA TGNVGSRRSFRQTVCRHWLRSLCMKGDACGFLHQYD
Subjt:  MEDSEGVLSFDFEGGLDAGPTNPAATSLPLIQSDSSAPPAASAVSNSGVGAVGPAVAAEAAGAPTGNVGSRRSFRQTVCRHWLRSLCMKGDACGFLHQYD

Query:  KSRMPICRFFRLYGECREQDCVYKHTNEDIKECNMY
        KSRMPICRFFRLYGECREQDCVYKHTNEDIKECNMY
Subjt:  KSRMPICRFFRLYGECREQDCVYKHTNEDIKECNMY

XP_023001070.1 30-kDa cleavage and polyadenylation specificity factor 30-like [Cucurbita maxima]6.3e-6593.43Show/hide
Query:  MEDSEGVLSFDFEGGLDAGPTNPAAT-SLPLIQSDSSAPPAASAVSNSGVGAVGPAVAAEAAGAPTGNVGSRRSFRQTVCRHWLRSLCMKGDACGFLHQY
        MEDSEGVLSFDFEGGLDAGPTNPAAT SLP+IQSDSS  PAASAVSNS VGAVGPAV A+A GAPTGNVG+RRSFRQTVCRHWLRSLCMKGDACGFLHQY
Subjt:  MEDSEGVLSFDFEGGLDAGPTNPAAT-SLPLIQSDSSAPPAASAVSNSGVGAVGPAVAAEAAGAPTGNVGSRRSFRQTVCRHWLRSLCMKGDACGFLHQY

Query:  DKSRMPICRFFRLYGECREQDCVYKHTNEDIKECNMY
        DKSRMPICRFFRLYGECREQDCVYKHTNEDIKECNMY
Subjt:  DKSRMPICRFFRLYGECREQDCVYKHTNEDIKECNMY

XP_023541976.1 30-kDa cleavage and polyadenylation specificity factor 30-like [Cucurbita pepo subsp. pepo]2.9e-6592.65Show/hide
Query:  MEDSEGVLSFDFEGGLDAGPTNPAATSLPLIQSDSSAPPAASAVSNSGVGAVGPAVAAEAAGAPTGNVGSRRSFRQTVCRHWLRSLCMKGDACGFLHQYD
        MEDSEG LSFDFEGGLDAGPTNPAA SLPLI SDSSAPPAASAVSNSG GA GP V A+A+GA TGNVGSRRSFRQTVCRHWLRSLCMKGDACGFLHQYD
Subjt:  MEDSEGVLSFDFEGGLDAGPTNPAATSLPLIQSDSSAPPAASAVSNSGVGAVGPAVAAEAAGAPTGNVGSRRSFRQTVCRHWLRSLCMKGDACGFLHQYD

Query:  KSRMPICRFFRLYGECREQDCVYKHTNEDIKECNMY
        KSRMPICRFFRLYGECREQDCVYKHTNEDIKECNMY
Subjt:  KSRMPICRFFRLYGECREQDCVYKHTNEDIKECNMY

TrEMBL top hitse value%identityAlignment
A0A5A7T8Q5 30-kDa cleavage and polyadenylation specificity factor 30-like8.9e-6592.7Show/hide
Query:  MEDSEGVLSFDFEGGLDAGPTNPAAT-SLPLIQSDSSAPPAASAVSNSGVGAVGPAVAAEAAGAPTGNVGSRRSFRQTVCRHWLRSLCMKGDACGFLHQY
        MEDSEGVLSFDFEGGLDAGPTNPAAT SLPLI SDSSAPPAASAVSNS  GA+GPAV+AE  GAP GNVG+RRSFRQTVCRHWLRSLCMKGDACGFLHQY
Subjt:  MEDSEGVLSFDFEGGLDAGPTNPAAT-SLPLIQSDSSAPPAASAVSNSGVGAVGPAVAAEAAGAPTGNVGSRRSFRQTVCRHWLRSLCMKGDACGFLHQY

Query:  DKSRMPICRFFRLYGECREQDCVYKHTNEDIKECNMY
        DKSRMPICRFFRLYGECREQDCVYKHTNEDIKECNMY
Subjt:  DKSRMPICRFFRLYGECREQDCVYKHTNEDIKECNMY

A0A5D3BQI0 30-kDa cleavage and polyadenylation specificity factor 30-like8.9e-6592.7Show/hide
Query:  MEDSEGVLSFDFEGGLDAGPTNPAAT-SLPLIQSDSSAPPAASAVSNSGVGAVGPAVAAEAAGAPTGNVGSRRSFRQTVCRHWLRSLCMKGDACGFLHQY
        MEDSEGVLSFDFEGGLDAGPTNPAAT SLPLI SDSSAPPAASAVSNS  GA+GPAV+AE  GAP GNVG+RRSFRQTVCRHWLRSLCMKGDACGFLHQY
Subjt:  MEDSEGVLSFDFEGGLDAGPTNPAAT-SLPLIQSDSSAPPAASAVSNSGVGAVGPAVAAEAAGAPTGNVGSRRSFRQTVCRHWLRSLCMKGDACGFLHQY

Query:  DKSRMPICRFFRLYGECREQDCVYKHTNEDIKECNMY
        DKSRMPICRFFRLYGECREQDCVYKHTNEDIKECNMY
Subjt:  DKSRMPICRFFRLYGECREQDCVYKHTNEDIKECNMY

A0A6J1CE78 30-kDa cleavage and polyadenylation specificity factor 301.4e-6593.38Show/hide
Query:  MEDSEGVLSFDFEGGLDAGPTNPAATSLPLIQSDSSAPPAASAVSNSGVGAVGPAVAAEAAGAPTGNVGSRRSFRQTVCRHWLRSLCMKGDACGFLHQYD
        MED EGVLSFDFEGGLDAGPTNPAATSLPLIQSD SAPPAASAVS+SG GAVG AV  EA GA TGNVGSRRSFRQTVCRHWLRSLCMKGDACGFLHQYD
Subjt:  MEDSEGVLSFDFEGGLDAGPTNPAATSLPLIQSDSSAPPAASAVSNSGVGAVGPAVAAEAAGAPTGNVGSRRSFRQTVCRHWLRSLCMKGDACGFLHQYD

Query:  KSRMPICRFFRLYGECREQDCVYKHTNEDIKECNMY
        KSRMPICRFFRLYGECREQDCVYKHTNEDIKECNMY
Subjt:  KSRMPICRFFRLYGECREQDCVYKHTNEDIKECNMY

A0A6J1JWQ9 30-kDa cleavage and polyadenylation specificity factor 30-like4.0e-6591.91Show/hide
Query:  MEDSEGVLSFDFEGGLDAGPTNPAATSLPLIQSDSSAPPAASAVSNSGVGAVGPAVAAEAAGAPTGNVGSRRSFRQTVCRHWLRSLCMKGDACGFLHQYD
        MEDSEG LSFDFEGGLDAGPTNPAA SLPLI SDSS PPAASAVSNSG GA GP V A+A+GA TGNVGSRRSFRQTVCRHWLRSLCMKGDACGFLHQYD
Subjt:  MEDSEGVLSFDFEGGLDAGPTNPAATSLPLIQSDSSAPPAASAVSNSGVGAVGPAVAAEAAGAPTGNVGSRRSFRQTVCRHWLRSLCMKGDACGFLHQYD

Query:  KSRMPICRFFRLYGECREQDCVYKHTNEDIKECNMY
        KSRMPICRFFRLYGECREQDCVYKHTNEDIKECNMY
Subjt:  KSRMPICRFFRLYGECREQDCVYKHTNEDIKECNMY

A0A6J1KK22 30-kDa cleavage and polyadenylation specificity factor 30-like3.1e-6593.43Show/hide
Query:  MEDSEGVLSFDFEGGLDAGPTNPAAT-SLPLIQSDSSAPPAASAVSNSGVGAVGPAVAAEAAGAPTGNVGSRRSFRQTVCRHWLRSLCMKGDACGFLHQY
        MEDSEGVLSFDFEGGLDAGPTNPAAT SLP+IQSDSS  PAASAVSNS VGAVGPAV A+A GAPTGNVG+RRSFRQTVCRHWLRSLCMKGDACGFLHQY
Subjt:  MEDSEGVLSFDFEGGLDAGPTNPAAT-SLPLIQSDSSAPPAASAVSNSGVGAVGPAVAAEAAGAPTGNVGSRRSFRQTVCRHWLRSLCMKGDACGFLHQY

Query:  DKSRMPICRFFRLYGECREQDCVYKHTNEDIKECNMY
        DKSRMPICRFFRLYGECREQDCVYKHTNEDIKECNMY
Subjt:  DKSRMPICRFFRLYGECREQDCVYKHTNEDIKECNMY

SwissProt top hitse value%identityAlignment
A9LNK9 30-kDa cleavage and polyadenylation specificity factor 307.1e-4366.91Show/hide
Query:  MEDSEGVLSFDFEGGLDAGPTNPAATSLPLIQSDSSAPPAASAVSNSGVGAVGPAVAAEAAGAPTGNVGSRRSFRQTVCRHWLRSLCMKGDACGFLHQYD
        MED++G LSFDFEGGLD+GP    A S+P+      APP      NS   AV  A   + + A     G  RSFRQTVCRHWLR LCMKGDACGFLHQ+D
Subjt:  MEDSEGVLSFDFEGGLDAGPTNPAATSLPLIQSDSSAPPAASAVSNSGVGAVGPAVAAEAAGAPTGNVGSRRSFRQTVCRHWLRSLCMKGDACGFLHQYD

Query:  KSRMPICRFFRLYGECREQDCVYKHTNEDIKECNMY
        K+RMPICRFFRLYGECREQDCVYKHTNEDIKECNMY
Subjt:  KSRMPICRFFRLYGECREQDCVYKHTNEDIKECNMY

O19137 Cleavage and polyadenylation specificity factor subunit 44.1e-1446.88Show/hide
Query:  RQTVCRHWLRSLCMKGDACGFLHQYDKSRMPICRFFRLYGECREQDCVYKHTNED--IKECNMY
        +  VC+HWLR LC KGD C FLH+YD ++MP C F+  +GEC  ++C + H + +  IK+C  Y
Subjt:  RQTVCRHWLRSLCMKGDACGFLHQYDKSRMPICRFFRLYGECREQDCVYKHTNED--IKECNMY

O95639 Cleavage and polyadenylation specificity factor subunit 44.1e-1446.88Show/hide
Query:  RQTVCRHWLRSLCMKGDACGFLHQYDKSRMPICRFFRLYGECREQDCVYKHTNED--IKECNMY
        +  VC+HWLR LC KGD C FLH+YD ++MP C F+  +GEC  ++C + H + +  IK+C  Y
Subjt:  RQTVCRHWLRSLCMKGDACGFLHQYDKSRMPICRFFRLYGECREQDCVYKHTNED--IKECNMY

Q0DA50 Zinc finger CCCH domain-containing protein 455.6e-3253.79Show/hide
Query:  EGVLSFDFEGGLDAGPTNPAATSLPLIQSDSSAPPAASAVSNSGVGAVGPAVAAEAAGAPTGNVGSRRSFRQTVCRHWLRSLCMKGDACGFLHQYDKSRM
        +G LSFDFEGGLD  P            +     PA  +    GVG  G        G   G    R S+RQTVCRHWLR LCMKG+ACGFLHQ+DK+RM
Subjt:  EGVLSFDFEGGLDAGPTNPAATSLPLIQSDSSAPPAASAVSNSGVGAVGPAVAAEAAGAPTGNVGSRRSFRQTVCRHWLRSLCMKGDACGFLHQYDKSRM

Query:  PICRFFRLYGECREQDCVYKHTNEDIKECNMY
        P+CRFFR +GECRE DC YKH+ +D+KECNMY
Subjt:  PICRFFRLYGECREQDCVYKHTNEDIKECNMY

Q4P384 mRNA 3'-end-processing protein YTH18.2e-1546.05Show/hide
Query:  PTGNVGSRRSFRQTVCRHWLRSLCMKGDACGFLHQYDKSRMPICRFFRLYGECRE-QDCVYKHTNEDIK--ECNMY
        P G+   R   ++TVC+HWLR LC K D C +LH+YD  R+P CRF+  +G C    DC+Y H +  IK  EC  Y
Subjt:  PTGNVGSRRSFRQTVCRHWLRSLCMKGDACGFLHQYDKSRMPICRFFRLYGECRE-QDCVYKHTNEDIK--ECNMY

Arabidopsis top hitse value%identityAlignment
AT1G30460.1 cleavage and polyadenylation specificity factor 305.0e-4466.91Show/hide
Query:  MEDSEGVLSFDFEGGLDAGPTNPAATSLPLIQSDSSAPPAASAVSNSGVGAVGPAVAAEAAGAPTGNVGSRRSFRQTVCRHWLRSLCMKGDACGFLHQYD
        MED++G LSFDFEGGLD+GP    A S+P+      APP      NS   AV  A   + + A     G  RSFRQTVCRHWLR LCMKGDACGFLHQ+D
Subjt:  MEDSEGVLSFDFEGGLDAGPTNPAATSLPLIQSDSSAPPAASAVSNSGVGAVGPAVAAEAAGAPTGNVGSRRSFRQTVCRHWLRSLCMKGDACGFLHQYD

Query:  KSRMPICRFFRLYGECREQDCVYKHTNEDIKECNMY
        K+RMPICRFFRLYGECREQDCVYKHTNEDIKECNMY
Subjt:  KSRMPICRFFRLYGECREQDCVYKHTNEDIKECNMY

AT1G30460.2 cleavage and polyadenylation specificity factor 305.0e-4466.91Show/hide
Query:  MEDSEGVLSFDFEGGLDAGPTNPAATSLPLIQSDSSAPPAASAVSNSGVGAVGPAVAAEAAGAPTGNVGSRRSFRQTVCRHWLRSLCMKGDACGFLHQYD
        MED++G LSFDFEGGLD+GP    A S+P+      APP      NS   AV  A   + + A     G  RSFRQTVCRHWLR LCMKGDACGFLHQ+D
Subjt:  MEDSEGVLSFDFEGGLDAGPTNPAATSLPLIQSDSSAPPAASAVSNSGVGAVGPAVAAEAAGAPTGNVGSRRSFRQTVCRHWLRSLCMKGDACGFLHQYD

Query:  KSRMPICRFFRLYGECREQDCVYKHTNEDIKECNMY
        K+RMPICRFFRLYGECREQDCVYKHTNEDIKECNMY
Subjt:  KSRMPICRFFRLYGECREQDCVYKHTNEDIKECNMY


Sequences Show/hide sequences
CDS sequenceShow/hide CDS sequence
ATGGAGGACTCGGAGGGCGTTCTCAGCTTTGATTTCGAGGGCGGCCTCGATGCCGGTCCCACGAACCCCGCCGCCACCTCCTTGCCTCTCATCCAGTCCGACTCTTCTGC
CCCGCCTGCCGCCTCCGCCGTCTCCAATTCTGGGGTCGGCGCCGTGGGTCCTGCTGTGGCAGCTGAAGCTGCTGGCGCACCGACCGGCAACGTGGGGAGCCGGAGGAGCT
TCCGGCAAACAGTTTGCCGGCATTGGCTCCGTAGCCTGTGTATGAAGGGCGACGCCTGTGGCTTTCTTCACCAGTATGATAAGTCCCGGATGCCCATTTGCCGCTTCTTC
CGTCTCTACGGCGAGTGCCGCGAACAAGATTGCGTGTACAAACATACCAACGAAGATATCAAGGAGTGTAATATGTACGTTTGGAATTTGGGATTGAATTTTAGCCTGAG
TTCTCAGCTGTTCGTCTGA
mRNA sequenceShow/hide mRNA sequence
ATGGAGGACTCGGAGGGCGTTCTCAGCTTTGATTTCGAGGGCGGCCTCGATGCCGGTCCCACGAACCCCGCCGCCACCTCCTTGCCTCTCATCCAGTCCGACTCTTCTGC
CCCGCCTGCCGCCTCCGCCGTCTCCAATTCTGGGGTCGGCGCCGTGGGTCCTGCTGTGGCAGCTGAAGCTGCTGGCGCACCGACCGGCAACGTGGGGAGCCGGAGGAGCT
TCCGGCAAACAGTTTGCCGGCATTGGCTCCGTAGCCTGTGTATGAAGGGCGACGCCTGTGGCTTTCTTCACCAGTATGATAAGTCCCGGATGCCCATTTGCCGCTTCTTC
CGTCTCTACGGCGAGTGCCGCGAACAAGATTGCGTGTACAAACATACCAACGAAGATATCAAGGAGTGTAATATGTACGTTTGGAATTTGGGATTGAATTTTAGCCTGAG
TTCTCAGCTGTTCGTCTGA
Protein sequenceShow/hide protein sequence
MEDSEGVLSFDFEGGLDAGPTNPAATSLPLIQSDSSAPPAASAVSNSGVGAVGPAVAAEAAGAPTGNVGSRRSFRQTVCRHWLRSLCMKGDACGFLHQYDKSRMPICRFF
RLYGECREQDCVYKHTNEDIKECNMYVWNLGLNFSLSSQLFV