| GenBank top hits | e value | %identity | Alignment |
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| GAU19483.1 hypothetical protein TSUD_77270 [Trifolium subterraneum] | 1.8e-27 | 38.38 | Show/hide |
Query: LRCDNAVFFEFHFDSFVVQDKDTGQVVLVRRIKNSLYQLQSCDHLATPVSCSSVAASLQSAVPMLKSNANSLAFLVFSNMKYVSNCVWHRQLGHPSPKIL
L DN + EF + V+DK TG+V+L +K+ LYQL + N AF+ WHR+LGHP+ K+L
Subjt: LRCDNAVFFEFHFDSFVVQDKDTGQVVLVRRIKNSLYQLQSCDHLATPVSCSSVAASLQSAVPMLKSNANSLAFLVFSNMKYVSNCVWHRQLGHPSPKIL
Query: DLVINTYCLLTKFNDNCPFCKACQFGKSSALSFLRSNSHATAPFELVYSNLLGPSPVDSIPGFKFYIHFLDDFSRHVWIYPLKRK
D V+ + + +DN FC+ACQ+GK L F S+SHA P ELV++++ GP+P+ + GFK+Y+HF+DDFSR WIYPLK+K
Subjt: DLVINTYCLLTKFNDNCPFCKACQFGKSSALSFLRSNSHATAPFELVYSNLLGPSPVDSIPGFKFYIHFLDDFSRHVWIYPLKRK
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| PNX78574.1 retrovirus-related Pol polyprotein from transposon TNT 1-94 [Trifolium pratense] | 7.0e-27 | 38.92 | Show/hide |
Query: LRCDNAVFFEFHFDSFVVQDKDTGQVVLVRRIKNSLYQLQSCDHLATPVSCSSVAASLQSAVPMLKSNANSLAFLVFSNMKYVSNCVWHRQLGHPSPKIL
L DN + EF D V+DK TG+V+L +K+ LYQL + C V+ ++K WHR+LGHPS +L
Subjt: LRCDNAVFFEFHFDSFVVQDKDTGQVVLVRRIKNSLYQLQSCDHLATPVSCSSVAASLQSAVPMLKSNANSLAFLVFSNMKYVSNCVWHRQLGHPSPKIL
Query: DLVINTYCLLTKFNDNCPFCKACQFGKSSALSFLRSNSHATAPFELVYSNLLGPSPVDSIPGFKFYIHFLDDFSRHVWIYPLKRK
D V+ + T +D FC+ACQ GKS L F S+SHA EL+++++ GP+P++SI GFK+Y+HF+DD SR WIYPLK+K
Subjt: DLVINTYCLLTKFNDNCPFCKACQFGKSSALSFLRSNSHATAPFELVYSNLLGPSPVDSIPGFKFYIHFLDDFSRHVWIYPLKRK
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| PNY01489.1 copia-like polyprotein, partial [Trifolium pratense] | 1.2e-26 | 37.84 | Show/hide |
Query: LRCDNAVFFEFHFDSFVVQDKDTGQVVLVRRIKNSLYQLQSCDHLATPVSCSSVAASLQSAVPMLKSNANSLAFLVFSNMKYVSNCVWHRQLGHPSPKIL
L DN +F EF + V+DK TGQ +L R+K+ LYQL + C V+ ++K WHR+LGHP+ K+L
Subjt: LRCDNAVFFEFHFDSFVVQDKDTGQVVLVRRIKNSLYQLQSCDHLATPVSCSSVAASLQSAVPMLKSNANSLAFLVFSNMKYVSNCVWHRQLGHPSPKIL
Query: DLVINTYCLLTKFNDNCPFCKACQFGKSSALSFLRSNSHATAPFELVYSNLLGPSPVDSIPGFKFYIHFLDDFSRHVWIYPLKRK
+ V+ + +D FC+ACQFGK L F S+SH P L++S++ GP+P+ S GFK+Y+HF+DDFSR WI+PLK+K
Subjt: DLVINTYCLLTKFNDNCPFCKACQFGKSSALSFLRSNSHATAPFELVYSNLLGPSPVDSIPGFKFYIHFLDDFSRHVWIYPLKRK
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| PNY02796.1 copia protein (gag-int-pol protein), partial [Trifolium pratense] | 1.4e-27 | 36.76 | Show/hide |
Query: LRCDNAVFFEFHFDSFVVQDKDTGQVVLVRRIKNSLYQLQSCDHLATPVSCSSVAASLQSAVPMLKSNANSLAFLVFSNMKYVSNCVWHRQLGHPSPKIL
L DN + EF D V+DK TG+ +L ++K LYQ+ + + +C+ ++ WHR+LGHP+ K+L
Subjt: LRCDNAVFFEFHFDSFVVQDKDTGQVVLVRRIKNSLYQLQSCDHLATPVSCSSVAASLQSAVPMLKSNANSLAFLVFSNMKYVSNCVWHRQLGHPSPKIL
Query: DLVINTYCLLTKFNDNCPFCKACQFGKSSALSFLRSNSHATAPFELVYSNLLGPSPVDSIPGFKFYIHFLDDFSRHVWIYPLKRK
D V+ + T +D FC+ACQFGK L F S SHA P +L+++++ GP+P+ S GFK+Y+HF+DDFSR WIYPLK+K
Subjt: DLVINTYCLLTKFNDNCPFCKACQFGKSSALSFLRSNSHATAPFELVYSNLLGPSPVDSIPGFKFYIHFLDDFSRHVWIYPLKRK
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| RZB67542.1 Retrovirus-related Pol polyprotein from transposon RE1 [Glycine soja] | 2.6e-26 | 36.76 | Show/hide |
Query: LRCDNAVFFEFHFDSFVVQDKDTGQVVLVRRIKNSLYQLQSCDHLATPVSCSSVAASLQSAVPMLKSNANSLAFLVFSNMKYVSNCVWHRQLGHPSPKIL
L DN EF + V+DK TG+ +L ++++ LYQL S C+ ++ +K N WHR+LGHP+ K+L
Subjt: LRCDNAVFFEFHFDSFVVQDKDTGQVVLVRRIKNSLYQLQSCDHLATPVSCSSVAASLQSAVPMLKSNANSLAFLVFSNMKYVSNCVWHRQLGHPSPKIL
Query: DLVINTYCLLTKFNDNCPFCKACQFGKSSALSFLRSNSHATAPFELVYSNLLGPSPVDSIPGFKFYIHFLDDFSRHVWIYPLKRK
+ V+ + ND FC+ACQFGK L F S+SHA P +L++S++ GP+P+ S FK+Y+HF+DDFSR WI+PLK+K
Subjt: DLVINTYCLLTKFNDNCPFCKACQFGKSSALSFLRSNSHATAPFELVYSNLLGPSPVDSIPGFKFYIHFLDDFSRHVWIYPLKRK
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| TrEMBL top hits | e value | %identity | Alignment |
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| A0A2K3NIC3 Copia protein (Gag-int-pol protein) (Fragment) | 6.8e-28 | 36.76 | Show/hide |
Query: LRCDNAVFFEFHFDSFVVQDKDTGQVVLVRRIKNSLYQLQSCDHLATPVSCSSVAASLQSAVPMLKSNANSLAFLVFSNMKYVSNCVWHRQLGHPSPKIL
L DN + EF D V+DK TG+ +L ++K LYQ+ + + +C+ ++ WHR+LGHP+ K+L
Subjt: LRCDNAVFFEFHFDSFVVQDKDTGQVVLVRRIKNSLYQLQSCDHLATPVSCSSVAASLQSAVPMLKSNANSLAFLVFSNMKYVSNCVWHRQLGHPSPKIL
Query: DLVINTYCLLTKFNDNCPFCKACQFGKSSALSFLRSNSHATAPFELVYSNLLGPSPVDSIPGFKFYIHFLDDFSRHVWIYPLKRK
D V+ + T +D FC+ACQFGK L F S SHA P +L+++++ GP+P+ S GFK+Y+HF+DDFSR WIYPLK+K
Subjt: DLVINTYCLLTKFNDNCPFCKACQFGKSSALSFLRSNSHATAPFELVYSNLLGPSPVDSIPGFKFYIHFLDDFSRHVWIYPLKRK
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| A0A2Z6MBG6 Integrase catalytic domain-containing protein | 8.9e-28 | 38.38 | Show/hide |
Query: LRCDNAVFFEFHFDSFVVQDKDTGQVVLVRRIKNSLYQLQSCDHLATPVSCSSVAASLQSAVPMLKSNANSLAFLVFSNMKYVSNCVWHRQLGHPSPKIL
L DN + EF + V+DK TG+V+L +K+ LYQL + N AF+ WHR+LGHP+ K+L
Subjt: LRCDNAVFFEFHFDSFVVQDKDTGQVVLVRRIKNSLYQLQSCDHLATPVSCSSVAASLQSAVPMLKSNANSLAFLVFSNMKYVSNCVWHRQLGHPSPKIL
Query: DLVINTYCLLTKFNDNCPFCKACQFGKSSALSFLRSNSHATAPFELVYSNLLGPSPVDSIPGFKFYIHFLDDFSRHVWIYPLKRK
D V+ + + +DN FC+ACQ+GK L F S+SHA P ELV++++ GP+P+ + GFK+Y+HF+DDFSR WIYPLK+K
Subjt: DLVINTYCLLTKFNDNCPFCKACQFGKSSALSFLRSNSHATAPFELVYSNLLGPSPVDSIPGFKFYIHFLDDFSRHVWIYPLKRK
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| A0A803P5A9 Uncharacterized protein | 2.7e-32 | 47.03 | Show/hide |
Query: LRCDNAVFFEFHFDSFVVQDKDTGQVVLVRRIKNSLYQLQSCDHLATPVSCSSVAASLQSAVPMLKSNANSLAFLVFSNMKYVSNCVWHRQLGHPSPKIL
L DN + EF D V+DK T +V+L +K+ LYQL S P+S V QSA P S + SN + VWHR+LGHPS KIL
Subjt: LRCDNAVFFEFHFDSFVVQDKDTGQVVLVRRIKNSLYQLQSCDHLATPVSCSSVAASLQSAVPMLKSNANSLAFLVFSNMKYVSNCVWHRQLGHPSPKIL
Query: DLVINTYCLLTKFNDNCPFCKACQFGKSSALSFLRSNSHATAPFELVYSNLLGPSPVDSIPGFKFYIHFLDDFSRHVWIYPLKRK
LV+N+ + FN+N FC ACQ+GKS AL F SNS AT EL++++L GP+P++S FKFYIHFLDD+SR W+YPLK+K
Subjt: DLVINTYCLLTKFNDNCPFCKACQFGKSSALSFLRSNSHATAPFELVYSNLLGPSPVDSIPGFKFYIHFLDDFSRHVWIYPLKRK
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| A0A803PM38 Uncharacterized protein | 2.8e-29 | 41.97 | Show/hide |
Query: LRCDNAVFFEFHFDSFVVQDKDTGQVVLVRRIKNSLYQLQSCDHLATPVSCSSVAASLQSAVPMLKSNANSLAFLVFSNM-KYVSNCV-------WHRQL
L DN V EF D V+DK+TGQVVL ++K+ LYQ + P S +S++++ + P S + + V SN+ K ++N + WHR+L
Subjt: LRCDNAVFFEFHFDSFVVQDKDTGQVVLVRRIKNSLYQLQSCDHLATPVSCSSVAASLQSAVPMLKSNANSLAFLVFSNM-KYVSNCV-------WHRQL
Query: GHPSPKILDLVINTYCLLTKFNDNCPFCKACQFGKSSALSFLRSNSHATAPFELVYSNLLGPSPVDSIPGFKFYIHFLDDFSRHVWIYPLKRK
GHPS ++LD V++ + N + FC ACQ GKS +L F + ATAP ELV++++ GPSP+ S F++YIHF+DDFSR+ WIYPLK K
Subjt: GHPSPKILDLVINTYCLLTKFNDNCPFCKACQFGKSSALSFLRSNSHATAPFELVYSNLLGPSPVDSIPGFKFYIHFLDDFSRHVWIYPLKRK
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| A0A803QD60 Uncharacterized protein | 6.6e-31 | 44.68 | Show/hide |
Query: DNAVFFEFHFDSFVVQDKDTGQVVLVRRIKNSLYQLQSCDHLATPVSCSSVAA------SLQSAVPMLKSNANSLAFLVFSNMKYVSNCVWHRQLGHPSP
DN V EF+ D VV+DK T +V+L +++ LYQLQ+ T S S + + S V KS+ N L K + VW R+LGHPSP
Subjt: DNAVFFEFHFDSFVVQDKDTGQVVLVRRIKNSLYQLQSCDHLATPVSCSSVAA------SLQSAVPMLKSNANSLAFLVFSNMKYVSNCVWHRQLGHPSP
Query: KILDLVINTYCLLTKFNDNCPFCKACQFGKSSALSFLRSNSHATAPFELVYSNLLGPSPVDSIPGFKFYIHFLDDFSRHVWIYPLKRK
++L V+N+ + N+ FC ACQFGKS AL F SNS AT +LV+S+L GPSPV S GF+ YIHF+DD +R+ WIYPLK K
Subjt: KILDLVINTYCLLTKFNDNCPFCKACQFGKSSALSFLRSNSHATAPFELVYSNLLGPSPVDSIPGFKFYIHFLDDFSRHVWIYPLKRK
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| SwissProt top hits | e value | %identity | Alignment |
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| P10978 Retrovirus-related Pol polyprotein from transposon TNT 1-94 | 5.9e-13 | 33.98 | Show/hide |
Query: VSNCVWHRQLGHPSPKILDLVINTYCLLTKFNDNCPFCKACQFGKSSALSFLRSNSHATAPFELVYSNLLGPSPVDSIPGFKFYIHFLDDFSRHVWIYPL
+S +WH+++GH S K L ++ + C C FGK +SF S+ +LVYS++ GP ++S+ G K+++ F+DD SR +W+Y L
Subjt: VSNCVWHRQLGHPSPKILDLVINTYCLLTKFNDNCPFCKACQFGKSSALSFLRSNSHATAPFELVYSNLLGPSPVDSIPGFKFYIHFLDDFSRHVWIYPL
Query: KRK
K K
Subjt: KRK
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| Q94HW2 Retrovirus-related Pol polyprotein from transposon RE1 | 1.4e-17 | 32.79 | Show/hide |
Query: NAVFFEFHFDSFVVQDKDTGQVVLVRRIKNSLYQLQSCDHLATPVSCSSVAASLQSAVPMLKSNANSLAFLVFSNMKYVSNCVWHRQLGHPSPKILDLVI
N V EF SF V+D +TG +L + K+ LY+ P++ S + S P K+ +S WH +LGHP+P IL+ VI
Subjt: NAVFFEFHFDSFVVQDKDTGQVVLVRRIKNSLYQLQSCDHLATPVSCSSVAASLQSAVPMLKSNANSLAFLVFSNMKYVSNCVWHRQLGHPSPKILDLVI
Query: NTYCLLTKFNDNCPF--CKACQFGKSSALSFLRSNSHATAPFELVYSNLLGPSPVDSIPGFKFYIHFLDDFSRHVWIYPLKRK
+ Y L+ N + F C C KS+ + F +S ++T P E +YS++ SP+ S +++Y+ F+D F+R+ W+YPLK+K
Subjt: NTYCLLTKFNDNCPF--CKACQFGKSSALSFLRSNSHATAPFELVYSNLLGPSPVDSIPGFKFYIHFLDDFSRHVWIYPLKRK
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| Q9ZT94 Retrovirus-related Pol polyprotein from transposon RE2 | 2.2e-15 | 31.32 | Show/hide |
Query: NAVFFEFHFDSFVVQDKDTGQVVLVRRIKNSLYQLQSCDHLATPVSCSSVAASLQSAVPMLKSNANSLAFLVFSNMKYVSNCVWHRQLGHPSPKILDLVI
N V EF SF V+D +TG +L + K+ LY+ P++ S + S P K+ +S WH +LGHPS IL+ VI
Subjt: NAVFFEFHFDSFVVQDKDTGQVVLVRRIKNSLYQLQSCDHLATPVSCSSVAASLQSAVPMLKSNANSLAFLVFSNMKYVSNCVWHRQLGHPSPKILDLVI
Query: NTYCL-LTKFNDNCPFCKACQFGKSSALSFLRSNSHATAPFELVYSNLLGPSPVDSIPGFKFYIHFLDDFSRHVWIYPLKRK
+ + L + + C C KS + F S ++ P E +YS++ SP+ SI +++Y+ F+D F+R+ W+YPLK+K
Subjt: NTYCL-LTKFNDNCPFCKACQFGKSSALSFLRSNSHATAPFELVYSNLLGPSPVDSIPGFKFYIHFLDDFSRHVWIYPLKRK
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