CuGenDBv2

Gene ID	Sgr020235
Organism	Siraitia grosvenorii cv. Qingpiguo (Monk fruit (Qingpiguo) v1)
Description	Polynucleotide phosphorylase 1
Genome location	tig00153450:382115..382968
RNA-Seq Expression	Sgr020235
Synteny	Sgr020235
Gene Ontology terms	GO:0000958 - mitochondrial mRNA catabolic process (biological process) GO:0000965 - mitochondrial RNA 3'-end processing (biological process) GO:0005739 - mitochondrion (cellular component) GO:0005829 - cytosol (cellular component) GO:0000175 - 3'-5'-exoribonuclease activity (molecular function) GO:0003676 - nucleic acid binding (molecular function) GO:0004654 - polyribonucleotide nucleotidyltransferase activity (molecular function)
InterPro domains	NA

Homology

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GenBank top hits

e value

%identity

Alignment

KAA0053844.1 putative polyribonucleotide nucleotidyltransferase 1 [Cucumis melo var. makuwa]

2.0e-21

58.4

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Query:  MLPDADQDSSSKENTGNPSRNKSATQKGPDKVTSKRAATTQKDGLKENMEQTDVKVSNQKVATAPTGNSLEDAAKLPKKFIRKEVSTTKDRPISKEKTKS
        +LPDADQDS+SKENT NPSRNK+A QKG DK TSK+A        KEN+EQT+V    QK  TAP G SLEDAAKL KKFIRK V+ TK+RPISKE+T+S
Subjt:  MLPDADQDSSSKENTGNPSRNKSATQKGPDKVTSKRAATTQKDGLKENMEQTDVKVSNQKVATAPTGNSLEDAAKLPKKFIRKEVSTTKDRPISKEKTKS

Query:  TSTR--------ESVVEVPHNLKIA
        TS +        ES++++  N  +A
Subjt:  TSTR--------ESVVEVPHNLKIA

TYK25556.1 putative polyribonucleotide nucleotidyltransferase 1 [Cucumis melo var. makuwa]

2.0e-21

58.4

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Query:  MLPDADQDSSSKENTGNPSRNKSATQKGPDKVTSKRAATTQKDGLKENMEQTDVKVSNQKVATAPTGNSLEDAAKLPKKFIRKEVSTTKDRPISKEKTKS
        +LPDADQDS+SKENT NPSRNK+A QKG DK TSK+A        KEN+EQT+V    QK  TAP G SLEDAAKL KKFIRK V+ TK+RPISKE+T+S
Subjt:  MLPDADQDSSSKENTGNPSRNKSATQKGPDKVTSKRAATTQKDGLKENMEQTDVKVSNQKVATAPTGNSLEDAAKLPKKFIRKEVSTTKDRPISKEKTKS

Query:  TSTR--------ESVVEVPHNLKIA
        TS +        ES++++  N  +A
Subjt:  TSTR--------ESVVEVPHNLKIA

XP_022147752.1 probable polyribonucleotide nucleotidyltransferase 1, chloroplastic isoform X1 [Momordica charantia]

6.1e-23

71.84

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Query:  MLPDADQDSSSKENTGNPSRNKSATQKGPDKVTSKRAATTQKDGLKENMEQTDVKVSNQKVATAPTGNSLEDAAKLPKKFIRKEVSTTKDRPISKEKTKS
        +LPDADQD SSKENT NPSRNKSA QKGPDK TSKRA        +EN+EQT+VKVS          NSLEDAAKL KKFIRKEVS TKDRPISKEKTKS
Subjt:  MLPDADQDSSSKENTGNPSRNKSATQKGPDKVTSKRAATTQKDGLKENMEQTDVKVSNQKVATAPTGNSLEDAAKLPKKFIRKEVSTTKDRPISKEKTKS

Query:  TST
        TS+
Subjt:  TST

XP_022983703.1 probable polyribonucleotide nucleotidyltransferase 1, chloroplastic [Cucurbita maxima]

4.4e-21

66.99

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Query:  MLPDADQDSSSKENTGNPSRNKSATQKGPDKVTSKRAATTQKDGLKENMEQTDVKVSNQKVATAPTGNSLEDAAKLPKKFIRKEVSTTKDRPISKEKTKS
        +LP+AD+DSSSK+NTGNPSRNK+A QKGPDK TSK A        KENMEQ++V    QK   AP G+S EDAAKL KKFIRKE + TKDRPI+KEKTKS
Subjt:  MLPDADQDSSSKENTGNPSRNKSATQKGPDKVTSKRAATTQKDGLKENMEQTDVKVSNQKVATAPTGNSLEDAAKLPKKFIRKEVSTTKDRPISKEKTKS

Query:  TST
        TS+
Subjt:  TST

XP_038904843.1 probable polyribonucleotide nucleotidyltransferase 1, chloroplastic [Benincasa hispida]

1.4e-22

69.9

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Query:  MLPDADQDSSSKENTGNPSRNKSATQKGPDKVTSKRAATTQKDGLKENMEQTDVKVSNQKVATAPTGNSLEDAAKLPKKFIRKEVSTTKDRPISKEKTKS
        +LPDADQDSSSKENTGNPSRNK+ATQKG DK T K+A        KENMEQT+V    QK   AP GNSLEDAAKL KKFIRK V+ TK+RP+SKE+TKS
Subjt:  MLPDADQDSSSKENTGNPSRNKSATQKGPDKVTSKRAATTQKDGLKENMEQTDVKVSNQKVATAPTGNSLEDAAKLPKKFIRKEVSTTKDRPISKEKTKS

Query:  TST
        TS+
Subjt:  TST

TrEMBL top hits

e value

%identity

Alignment

A0A1S3B784 Polynucleotide phosphorylase 1

4.7e-21

66.99

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Query:  MLPDADQDSSSKENTGNPSRNKSATQKGPDKVTSKRAATTQKDGLKENMEQTDVKVSNQKVATAPTGNSLEDAAKLPKKFIRKEVSTTKDRPISKEKTKS
        +LPDADQDS+SKENT NPSRNK+A QKG DK TSK+A        KEN+EQT+V    QK  TAP G SLEDAAKL KKFIRK V+ TK+RPISKE+T+S
Subjt:  MLPDADQDSSSKENTGNPSRNKSATQKGPDKVTSKRAATTQKDGLKENMEQTDVKVSNQKVATAPTGNSLEDAAKLPKKFIRKEVSTTKDRPISKEKTKS

Query:  TST
        TS+
Subjt:  TST

A0A5A7UF08 Polynucleotide phosphorylase 1

9.5e-22

58.4

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Query:  MLPDADQDSSSKENTGNPSRNKSATQKGPDKVTSKRAATTQKDGLKENMEQTDVKVSNQKVATAPTGNSLEDAAKLPKKFIRKEVSTTKDRPISKEKTKS
        +LPDADQDS+SKENT NPSRNK+A QKG DK TSK+A        KEN+EQT+V    QK  TAP G SLEDAAKL KKFIRK V+ TK+RPISKE+T+S
Subjt:  MLPDADQDSSSKENTGNPSRNKSATQKGPDKVTSKRAATTQKDGLKENMEQTDVKVSNQKVATAPTGNSLEDAAKLPKKFIRKEVSTTKDRPISKEKTKS

Query:  TSTR--------ESVVEVPHNLKIA
        TS +        ES++++  N  +A
Subjt:  TSTR--------ESVVEVPHNLKIA

A0A5D3DPG4 Polynucleotide phosphorylase 1

9.5e-22

58.4

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Query:  MLPDADQDSSSKENTGNPSRNKSATQKGPDKVTSKRAATTQKDGLKENMEQTDVKVSNQKVATAPTGNSLEDAAKLPKKFIRKEVSTTKDRPISKEKTKS
        +LPDADQDS+SKENT NPSRNK+A QKG DK TSK+A        KEN+EQT+V    QK  TAP G SLEDAAKL KKFIRK V+ TK+RPISKE+T+S
Subjt:  MLPDADQDSSSKENTGNPSRNKSATQKGPDKVTSKRAATTQKDGLKENMEQTDVKVSNQKVATAPTGNSLEDAAKLPKKFIRKEVSTTKDRPISKEKTKS

Query:  TSTR--------ESVVEVPHNLKIA
        TS +        ES++++  N  +A
Subjt:  TSTR--------ESVVEVPHNLKIA

A0A6J1D386 Polynucleotide phosphorylase 1

2.9e-23

71.84

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Query:  MLPDADQDSSSKENTGNPSRNKSATQKGPDKVTSKRAATTQKDGLKENMEQTDVKVSNQKVATAPTGNSLEDAAKLPKKFIRKEVSTTKDRPISKEKTKS
        +LPDADQD SSKENT NPSRNKSA QKGPDK TSKRA        +EN+EQT+VKVS          NSLEDAAKL KKFIRKEVS TKDRPISKEKTKS
Subjt:  MLPDADQDSSSKENTGNPSRNKSATQKGPDKVTSKRAATTQKDGLKENMEQTDVKVSNQKVATAPTGNSLEDAAKLPKKFIRKEVSTTKDRPISKEKTKS

Query:  TST
        TS+
Subjt:  TST

A0A6J1J8H1 Polynucleotide phosphorylase 1

2.1e-21

66.99

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Query:  MLPDADQDSSSKENTGNPSRNKSATQKGPDKVTSKRAATTQKDGLKENMEQTDVKVSNQKVATAPTGNSLEDAAKLPKKFIRKEVSTTKDRPISKEKTKS
        +LP+AD+DSSSK+NTGNPSRNK+A QKGPDK TSK A        KENMEQ++V    QK   AP G+S EDAAKL KKFIRKE + TKDRPI+KEKTKS
Subjt:  MLPDADQDSSSKENTGNPSRNKSATQKGPDKVTSKRAATTQKDGLKENMEQTDVKVSNQKVATAPTGNSLEDAAKLPKKFIRKEVSTTKDRPISKEKTKS

Query:  TST
        TS+
Subjt:  TST

SwissProt top hits	e value	%identity	Alignment
No hits found

Arabidopsis top hits	e value	%identity	Alignment
No hits found

Sequences

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CDS sequence

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ATGCTTCCAGATGCTGATCAGGATTCCAGTTCAAAGGAGAATACAGGTAACCCCTCCAGAAACAAGTCTGCAACACAGAAGGGCCCTGATAAAGTTACATCTAAGAGAGC
TGCAACCACACAAAAGGACGGTCTTAAGGAGAACATGGAACAAACTGATGTTAAAGTGAGCAACCAGAAAGTTGCTACTGCACCCACTGGTAACTCATTAGAGGATGCTG
CAAAACTGCCGAAGAAATTTATACGGAAAGAAGTAAGCACGACCAAAGACAGACCTATAAGCAAAGAAAAGACAAAAAGCACAAGCACAAGAGAATCAGTGGTGGAAGTG
CCTCACAACTTGAAGATTGCCATGGTAAATCCTCTTGTCCTTTCCAGAAAAAGAAAATTGTGTACAGAAATGCGCAGTAGCAGGAGCAAAACAGGATGTCTCTCGTGTTT
TTATGAGTTGAAAGGAGGTCATTTATCGGTACAGCTGCTGCAGAGTAAAAGGAAGCTCATCCCCGAACTCTCATTTTTGGTCCCCAACTCCTGGGAAATATTCATTCATA
TGAAGATTATGCCATGTCCTATTCGGCTCTCTGATAGAGCTTTCTTAATGGAATAG

mRNA sequence

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Protein sequence

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MLPDADQDSSSKENTGNPSRNKSATQKGPDKVTSKRAATTQKDGLKENMEQTDVKVSNQKVATAPTGNSLEDAAKLPKKFIRKEVSTTKDRPISKEKTKSTSTRESVVEV
PHNLKIAMVNPLVLSRKRKLCTEMRSSRSKTGCLSCFYELKGGHLSVQLLQSKRKLIPELSFLVPNSWEIFIHMKIMPCPIRLSDRAFLME

Sgr020235 (gene) of Monk fruit (Qingpiguo) v1 genome