CuGenDBv2

Gene ID	Sgr020752
Organism	Siraitia grosvenorii cv. Qingpiguo (Monk fruit (Qingpiguo) v1)
Description	mediator of RNA polymerase II transcription subunit 28
Genome location	tig00153554:806424..819680
RNA-Seq Expression	Sgr020752
Synteny	Sgr020752
Gene Ontology terms	GO:0006355 - regulation of transcription, DNA-templated (biological process) GO:0016592 - mediator complex (cellular component)
InterPro domains	IPR034456 - Mediator of RNA polymerase II transcription subunit 28

Homology

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GenBank top hits

e value

%identity

Alignment

XP_004152267.1 mediator of RNA polymerase II transcription subunit 28 [Cucumis sativus]

1.8e-64

92.2

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Query:  MAERQPLDQQHQLDPQLQSSLSPKEDMIAYVMALEAALLPCLPARELQAIDRSPHPSHQIDVERHARDFMEAAKKLQLYFIGLQREDQPTKVETLRKEIS
        MAERQP+DQQH LDPQLQSS SP+EDMIAYVMALEAALLPCLPARELQAIDRSPHPSHQ+DVERHARDFMEAAKKLQLYFIGLQREDQPTKVETLRKEIS
Subjt:  MAERQPLDQQHQLDPQLQSSLSPKEDMIAYVMALEAALLPCLPARELQAIDRSPHPSHQIDVERHARDFMEAAKKLQLYFIGLQREDQPTKVETLRKEIS

Query:  AIEEELNLKNDIIKKQERLIEGWTKDLKDQLDKHNNELEKL
        AIEEEL +KN+IIKKQE+LIEGW KDLKDQLDKHNNELEK+
Subjt:  AIEEELNLKNDIIKKQERLIEGWTKDLKDQLDKHNNELEKL

XP_008454378.1 PREDICTED: mediator of RNA polymerase II transcription subunit 28 [Cucumis melo]

2.0e-63

92.2

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Query:  MAERQPLDQQHQLDPQLQSSLSPKEDMIAYVMALEAALLPCLPARELQAIDRSPHPSHQIDVERHARDFMEAAKKLQLYFIGLQREDQPTKVETLRKEIS
        MAERQ LDQQH LDPQ QSS SP+EDMIAYVMALEAALLPCLPARELQAIDRSPHPSHQ+DVERHARDFMEAAKKLQLYFIGLQREDQPTKVETLRKEIS
Subjt:  MAERQPLDQQHQLDPQLQSSLSPKEDMIAYVMALEAALLPCLPARELQAIDRSPHPSHQIDVERHARDFMEAAKKLQLYFIGLQREDQPTKVETLRKEIS

Query:  AIEEELNLKNDIIKKQERLIEGWTKDLKDQLDKHNNELEKL
        AIEEEL +KNDIIKKQERLIEGW KDLK+QLDKHNNELEK+
Subjt:  AIEEELNLKNDIIKKQERLIEGWTKDLKDQLDKHNNELEKL

XP_022149222.1 mediator of RNA polymerase II transcription subunit 28 [Momordica charantia]

3.4e-63

92.2

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Query:  MAERQPLDQQHQLDPQLQSSLSPKEDMIAYVMALEAALLPCLPARELQAIDRSPHPSHQIDVERHARDFMEAAKKLQLYFIGLQREDQPTKVETLRKEIS
        MA+RQP+DQQHQLDPQLQS  SP+EDMIAYVMALEAALLPCLPARELQAIDRSPHPSHQIDVERHARDFMEAAKKLQLYFIGLQREDQP KVETLRKEIS
Subjt:  MAERQPLDQQHQLDPQLQSSLSPKEDMIAYVMALEAALLPCLPARELQAIDRSPHPSHQIDVERHARDFMEAAKKLQLYFIGLQREDQPTKVETLRKEIS

Query:  AIEEELNLKNDIIKKQERLIEGWTKDLKDQLDKHNNELEKL
        AIEEEL LKNDIIKK ERLIEGW KDLKDQL KHNNELEK+
Subjt:  AIEEELNLKNDIIKKQERLIEGWTKDLKDQLDKHNNELEKL

XP_022922953.1 mediator of RNA polymerase II transcription subunit 28 [Cucurbita moschata]

1.8e-64

92.91

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Query:  MAERQPLDQQHQLDPQLQSSLSPKEDMIAYVMALEAALLPCLPARELQAIDRSPHPSHQIDVERHARDFMEAAKKLQLYFIGLQREDQPTKVETLRKEIS
        MAERQPLDQQ+Q+DPQLQSS SP+EDM++YVMALEAALLPCLPARELQAIDRSPHPSHQIDVERHARDFMEAAKKLQLYFIGLQREDQPTKVETLRKEIS
Subjt:  MAERQPLDQQHQLDPQLQSSLSPKEDMIAYVMALEAALLPCLPARELQAIDRSPHPSHQIDVERHARDFMEAAKKLQLYFIGLQREDQPTKVETLRKEIS

Query:  AIEEELNLKNDIIKKQERLIEGWTKDLKDQLDKHNNELEKL
        AIEEEL LK+DIIKKQERLIEGW KDLKDQLDKHNNELEK+
Subjt:  AIEEELNLKNDIIKKQERLIEGWTKDLKDQLDKHNNELEKL

XP_038904970.1 mediator of RNA polymerase II transcription subunit 28 [Benincasa hispida]

1.1e-64

93.62

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Query:  MAERQPLDQQHQLDPQLQSSLSPKEDMIAYVMALEAALLPCLPARELQAIDRSPHPSHQIDVERHARDFMEAAKKLQLYFIGLQREDQPTKVETLRKEIS
        MAERQPLDQQH LDPQLQSS SP+EDMIAYVMALEAALLPCLPARELQAIDRSPHPSHQ+DVERHARDFMEAAKKLQLYFIGLQREDQP KVETLRKEIS
Subjt:  MAERQPLDQQHQLDPQLQSSLSPKEDMIAYVMALEAALLPCLPARELQAIDRSPHPSHQIDVERHARDFMEAAKKLQLYFIGLQREDQPTKVETLRKEIS

Query:  AIEEELNLKNDIIKKQERLIEGWTKDLKDQLDKHNNELEKL
        AIEEEL LKN+IIKKQERLIEGW KDLKDQLDKHNNELEK+
Subjt:  AIEEELNLKNDIIKKQERLIEGWTKDLKDQLDKHNNELEKL

TrEMBL top hits

e value

%identity

Alignment

A0A0A0KT19 Uncharacterized protein

8.7e-65

92.2

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Query:  MAERQPLDQQHQLDPQLQSSLSPKEDMIAYVMALEAALLPCLPARELQAIDRSPHPSHQIDVERHARDFMEAAKKLQLYFIGLQREDQPTKVETLRKEIS
        MAERQP+DQQH LDPQLQSS SP+EDMIAYVMALEAALLPCLPARELQAIDRSPHPSHQ+DVERHARDFMEAAKKLQLYFIGLQREDQPTKVETLRKEIS
Subjt:  MAERQPLDQQHQLDPQLQSSLSPKEDMIAYVMALEAALLPCLPARELQAIDRSPHPSHQIDVERHARDFMEAAKKLQLYFIGLQREDQPTKVETLRKEIS

Query:  AIEEELNLKNDIIKKQERLIEGWTKDLKDQLDKHNNELEKL
        AIEEEL +KN+IIKKQE+LIEGW KDLKDQLDKHNNELEK+
Subjt:  AIEEELNLKNDIIKKQERLIEGWTKDLKDQLDKHNNELEKL

A0A1S3BZ89 mediator of RNA polymerase II transcription subunit 28

9.6e-64

92.2

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Query:  MAERQPLDQQHQLDPQLQSSLSPKEDMIAYVMALEAALLPCLPARELQAIDRSPHPSHQIDVERHARDFMEAAKKLQLYFIGLQREDQPTKVETLRKEIS
        MAERQ LDQQH LDPQ QSS SP+EDMIAYVMALEAALLPCLPARELQAIDRSPHPSHQ+DVERHARDFMEAAKKLQLYFIGLQREDQPTKVETLRKEIS
Subjt:  MAERQPLDQQHQLDPQLQSSLSPKEDMIAYVMALEAALLPCLPARELQAIDRSPHPSHQIDVERHARDFMEAAKKLQLYFIGLQREDQPTKVETLRKEIS

Query:  AIEEELNLKNDIIKKQERLIEGWTKDLKDQLDKHNNELEKL
        AIEEEL +KNDIIKKQERLIEGW KDLK+QLDKHNNELEK+
Subjt:  AIEEELNLKNDIIKKQERLIEGWTKDLKDQLDKHNNELEKL

A0A5A7TRZ8 Mediator of RNA polymerase II transcription subunit 28

9.6e-64

92.2

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Query:  MAERQPLDQQHQLDPQLQSSLSPKEDMIAYVMALEAALLPCLPARELQAIDRSPHPSHQIDVERHARDFMEAAKKLQLYFIGLQREDQPTKVETLRKEIS
        MAERQ LDQQH LDPQ QSS SP+EDMIAYVMALEAALLPCLPARELQAIDRSPHPSHQ+DVERHARDFMEAAKKLQLYFIGLQREDQPTKVETLRKEIS
Subjt:  MAERQPLDQQHQLDPQLQSSLSPKEDMIAYVMALEAALLPCLPARELQAIDRSPHPSHQIDVERHARDFMEAAKKLQLYFIGLQREDQPTKVETLRKEIS

Query:  AIEEELNLKNDIIKKQERLIEGWTKDLKDQLDKHNNELEKL
        AIEEEL +KNDIIKKQERLIEGW KDLK+QLDKHNNELEK+
Subjt:  AIEEELNLKNDIIKKQERLIEGWTKDLKDQLDKHNNELEKL

A0A6J1E897 mediator of RNA polymerase II transcription subunit 28

8.7e-65

92.91

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Query:  MAERQPLDQQHQLDPQLQSSLSPKEDMIAYVMALEAALLPCLPARELQAIDRSPHPSHQIDVERHARDFMEAAKKLQLYFIGLQREDQPTKVETLRKEIS
        MAERQPLDQQ+Q+DPQLQSS SP+EDM++YVMALEAALLPCLPARELQAIDRSPHPSHQIDVERHARDFMEAAKKLQLYFIGLQREDQPTKVETLRKEIS
Subjt:  MAERQPLDQQHQLDPQLQSSLSPKEDMIAYVMALEAALLPCLPARELQAIDRSPHPSHQIDVERHARDFMEAAKKLQLYFIGLQREDQPTKVETLRKEIS

Query:  AIEEELNLKNDIIKKQERLIEGWTKDLKDQLDKHNNELEKL
        AIEEEL LK+DIIKKQERLIEGW KDLKDQLDKHNNELEK+
Subjt:  AIEEELNLKNDIIKKQERLIEGWTKDLKDQLDKHNNELEKL

A0A6J1JAT8 mediator of RNA polymerase II transcription subunit 28

8.7e-65

92.91

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Query:  MAERQPLDQQHQLDPQLQSSLSPKEDMIAYVMALEAALLPCLPARELQAIDRSPHPSHQIDVERHARDFMEAAKKLQLYFIGLQREDQPTKVETLRKEIS
        MAERQPLDQQ+Q+DPQLQSS SP+EDM++YVMALEAALLPCLPARELQAIDRSPHPSHQIDVERHARDFMEAAKKLQLYFIGLQREDQPTKVETLRKEIS
Subjt:  MAERQPLDQQHQLDPQLQSSLSPKEDMIAYVMALEAALLPCLPARELQAIDRSPHPSHQIDVERHARDFMEAAKKLQLYFIGLQREDQPTKVETLRKEIS

Query:  AIEEELNLKNDIIKKQERLIEGWTKDLKDQLDKHNNELEKL
        AIEEEL LK+DIIKKQERLIEGW KDLKDQLDKHNNELEK+
Subjt:  AIEEELNLKNDIIKKQERLIEGWTKDLKDQLDKHNNELEKL

SwissProt top hits

e value

%identity

Alignment

Q9LFA5 Mediator of RNA polymerase II transcription subunit 28

1.5e-37

68.64

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Query:  EDMIAYVMALEAALLPCLPARELQAIDRSPHPSHQIDVERHARDFMEAAKKLQLYFIGLQREDQ-PTKVETLRKEISAIEEELNLKNDIIKKQERLIEGW
        ED++A V ALEAALLPCLPARELQAIDRSPHPSHQIDVERHARDFMEAAKKLQLYF+GL+RED+ P++ E+L+K+I+ +EEEL  K+++IKK  RL +  
Subjt:  EDMIAYVMALEAALLPCLPARELQAIDRSPHPSHQIDVERHARDFMEAAKKLQLYFIGLQREDQ-PTKVETLRKEISAIEEELNLKNDIIKKQERLIEGW

Query:  TKDLKDQLDKHNNELEKL
         K +K+Q++KH +ELEK+
Subjt:  TKDLKDQLDKHNNELEKL

Arabidopsis top hits

e value

%identity

Alignment

AT3G52860.1 unknown protein

1.1e-38

68.64

Show/hide

Query:  EDMIAYVMALEAALLPCLPARELQAIDRSPHPSHQIDVERHARDFMEAAKKLQLYFIGLQREDQ-PTKVETLRKEISAIEEELNLKNDIIKKQERLIEGW
        ED++A V ALEAALLPCLPARELQAIDRSPHPSHQIDVERHARDFMEAAKKLQLYF+GL+RED+ P++ E+L+K+I+ +EEEL  K+++IKK  RL +  
Subjt:  EDMIAYVMALEAALLPCLPARELQAIDRSPHPSHQIDVERHARDFMEAAKKLQLYFIGLQREDQ-PTKVETLRKEISAIEEELNLKNDIIKKQERLIEGW

Query:  TKDLKDQLDKHNNELEKL
         K +K+Q++KH +ELEK+
Subjt:  TKDLKDQLDKHNNELEKL

Sequences

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CDS sequence

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ATGGCCATTTTCTTCAAGGTGGAGAAGAGATCTCTCTTGGGGAAGAGTTTTGACATGAAGTTGAACCAGAAATGGAGGGATGGCCCCAGAATCAGCATGCCATATCCAGC
CATGCGCAGTGTTCGAATTAGATCATATGGCTCTGAAGATGGTAGAGCAATGATACCATTCAAGAAACTCAACCTTCAGAACCGAAAAAAGCGACGACACAGACGAGGAC
TGCACCGAGGGATAAGCACCGAACTCCTTCGTTTTTCTGAAAGAATCCGGCAGACGAAAGTACGGCCGAATGGATCGTGCTTGCTTCCTCGCGATCGCGGTGGGGCCGAA
AGGTTTTGGGCTGCAAATGGGAAGAGGGTTTTGAAATTCGAAGCAAAAGCAGAGAAAAGTTTCCCTCTTTCGGTCCCATTCGCGAAGGGGTTTTGTAGTACAATTGTAAA
GGAAACGGAGTCATTTCTTCTGAAGCTCATCGTTTGTCGAATTCTTCTTCTTGAGTATGTTCCTTCATCTGCTGTGTCCACAGGTATGGCTGAACGTCAACCACTCGACC
AACAGCATCAACTTGATCCACAGTTGCAATCCTCACTGTCTCCAAAAGAAGACATGATTGCATACGTGATGGCCTTGGAAGCTGCTCTGCTTCCGTGCTTGCCTGCAAGA
GAATTACAAGCAATAGACCGTTCTCCTCACCCTTCTCATCAAATTGACGTAGAGAGACATGCTAGGGATTTTATGGAGGCAGCTAAAAAGCTTCAACTGTACTTCATTGG
TTTACAGCGTGAGGATCAACCAACCAAAGTGGAAACACTAAGAAAGGAGATATCTGCCATTGAGGAGGAATTAAACTTAAAGAATGACATTATCAAGAAGCAGGAGAGGC
TCATTGAAGGGTGGACGAAGGATTTGAAAGACCAGTTAGATAAACATAACAATGAGTTAGAGAAGCTGGCAGAAACAGGCTCGCCAGAGTCGTCCTTCTTACTCTCTGAA
TCGATAGCAGTGAATTCGTTACCTCGCATTTCCGAGGCAGATACAGAGTCCAAGTCCAAGCAACCCAAATCCATAGCCAATTTACTCAGAAATGAAAACAGAATTCGATC
AAGCTTTCAGAAATCAAACAGATTTGATGTAAAAGATTCAATGTTCAGATCAATTGCGAGAGTTTATTGGGATAAATCTCTGTGTTTCGGTGAGAAATGTCGCAATAATT
CGCTTCTTGCGTTGAAATTAACCTCTGAATCTATGAAAGAGAAGAGAACTCTGTTTAATTTTTATGAAAATGGAAAGTAG

mRNA sequence

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Protein sequence

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MAIFFKVEKRSLLGKSFDMKLNQKWRDGPRISMPYPAMRSVRIRSYGSEDGRAMIPFKKLNLQNRKKRRHRRGLHRGISTELLRFSERIRQTKVRPNGSCLLPRDRGGAE
RFWAANGKRVLKFEAKAEKSFPLSVPFAKGFCSTIVKETESFLLKLIVCRILLLEYVPSSAVSTGMAERQPLDQQHQLDPQLQSSLSPKEDMIAYVMALEAALLPCLPAR
ELQAIDRSPHPSHQIDVERHARDFMEAAKKLQLYFIGLQREDQPTKVETLRKEISAIEEELNLKNDIIKKQERLIEGWTKDLKDQLDKHNNELEKLAETGSPESSFLLSE
SIAVNSLPRISEADTESKSKQPKSIANLLRNENRIRSSFQKSNRFDVKDSMFRSIARVYWDKSLCFGEKCRNNSLLALKLTSESMKEKRTLFNFYENGK

Sgr020752 (gene) of Monk fruit (Qingpiguo) v1 genome