CuGenDBv2

Gene ID	Sgr020821
Organism	Siraitia grosvenorii cv. Qingpiguo (Monk fruit (Qingpiguo) v1)
Description	ribonuclease H2 subunit C
Genome location	tig00153574:245185..247893
RNA-Seq Expression	Sgr020821
Synteny	Sgr020821
Gene Ontology terms	GO:0006401 - RNA catabolic process (biological process) GO:0032299 - ribonuclease H2 complex (cellular component)
InterPro domains	IPR013924 - Ribonuclease H2, subunit C

Homology

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GenBank top hits

e value

%identity

Alignment

KAG6583796.1 Ribonuclease H2 subunit C, partial [Cucurbita argyrosperma subsp. sororia]

5.1e-76

84.34

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Query:  MDAENEREKEVILDLDLGRDAVAVDLSGEVHQLPCTIKFDGPCSVSQYFKPKSTGVEVDGLSVKEAYFRGRKLQGATISLPEGYSGYVLGRKSLGKRKAS
        MD+ENER++EVI+D D G D+ AVDLSG+VHQLPC +KFDGPCSVSQYFKPKSTG+EVDGLSV+ AYFRGRKLQGATISLPEGYSGYV+GRKS GKRKAS
Subjt:  MDAENEREKEVILDLDLGRDAVAVDLSGEVHQLPCTIKFDGPCSVSQYFKPKSTGVEVDGLSVKEAYFRGRKLQGATISLPEGYSGYVLGRKSLGKRKAS

Query:  EQSQDSSPWQVKAKFENITYWNHGTLPSQDDTFRRSFHWLTVAQALHQPVSAEDLASASTALKNMS
        E+SQDSS WQVKAKFENITYWNH TLP+QDDTF+RSFHWLTVAQALH+PV+AEDLA+AS ALKNMS
Subjt:  EQSQDSSPWQVKAKFENITYWNHGTLPSQDDTFRRSFHWLTVAQALHQPVSAEDLASASTALKNMS

XP_022142418.1 ribonuclease H2 subunit C [Momordica charantia]

3.3e-75

86.14

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Query:  MDAENEREKEVILDLDLGRDAVAVDLSGEVHQLPCTIKFDGPCSVSQYFKPKSTGVEVDGLSVKEAYFRGRKLQGATISLPEGYSGYVLGRKSLGKRKAS
        MDAENER++EVI+DLDLGRD+ AVDLSG+VHQLPCT+K DGPCSVS YFKPK TG+EVDGLSV+EAYFRGRKLQGATISLPEGYSG+VLGRK LGKRKAS
Subjt:  MDAENEREKEVILDLDLGRDAVAVDLSGEVHQLPCTIKFDGPCSVSQYFKPKSTGVEVDGLSVKEAYFRGRKLQGATISLPEGYSGYVLGRKSLGKRKAS

Query:  EQSQDSSPWQVKAKFENITYWNHGTLPSQDDTFRRSFHWLTVAQALHQPVSAEDLASASTALKNMS
        EQSQDS  W+VKAKF NITYWNH TLPSQDD FRRSFHWLTVAQALHQPV+AEDLASASTA K+MS
Subjt:  EQSQDSSPWQVKAKFENITYWNHGTLPSQDDTFRRSFHWLTVAQALHQPVSAEDLASASTALKNMS

XP_022927160.1 uncharacterized protein C12B10.15c [Cucurbita moschata]

2.5e-75

83.73

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Query:  MDAENEREKEVILDLDLGRDAVAVDLSGEVHQLPCTIKFDGPCSVSQYFKPKSTGVEVDGLSVKEAYFRGRKLQGATISLPEGYSGYVLGRKSLGKRKAS
        MD+E ER++EVI+D D G D+ AVDLSG+VHQLPC +KFDGPCSVSQYFKPKSTG+EVDGLSV+ AYFRGRKLQGATISLPEGYSGYV+GRKS GKRKAS
Subjt:  MDAENEREKEVILDLDLGRDAVAVDLSGEVHQLPCTIKFDGPCSVSQYFKPKSTGVEVDGLSVKEAYFRGRKLQGATISLPEGYSGYVLGRKSLGKRKAS

Query:  EQSQDSSPWQVKAKFENITYWNHGTLPSQDDTFRRSFHWLTVAQALHQPVSAEDLASASTALKNMS
        E+SQDSS WQVKAKFENITYWNH TLP+QDDTF+RSFHWLTVAQALH+PV+AEDLA+AS ALKNMS
Subjt:  EQSQDSSPWQVKAKFENITYWNHGTLPSQDDTFRRSFHWLTVAQALHQPVSAEDLASASTALKNMS

XP_023001622.1 uncharacterized protein C12B10.15c [Cucurbita maxima]

4.3e-75

83.73

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Query:  MDAENEREKEVILDLDLGRDAVAVDLSGEVHQLPCTIKFDGPCSVSQYFKPKSTGVEVDGLSVKEAYFRGRKLQGATISLPEGYSGYVLGRKSLGKRKAS
        MD+E ER++EVI+D D G D+ AVDLSG+VHQLPC +KFDGPCSVSQYFKPKSTG+EVDGLSV+ AYFRGRKLQGATISLPEGY GYV+GRKSL KRKAS
Subjt:  MDAENEREKEVILDLDLGRDAVAVDLSGEVHQLPCTIKFDGPCSVSQYFKPKSTGVEVDGLSVKEAYFRGRKLQGATISLPEGYSGYVLGRKSLGKRKAS

Query:  EQSQDSSPWQVKAKFENITYWNHGTLPSQDDTFRRSFHWLTVAQALHQPVSAEDLASASTALKNMS
        E+SQDSS WQVKAKFENITYWNH TLP+QDDTF+RSFHWLTVAQALH+PV+AEDLA ASTALKNMS
Subjt:  EQSQDSSPWQVKAKFENITYWNHGTLPSQDDTFRRSFHWLTVAQALHQPVSAEDLASASTALKNMS

XP_038893586.1 uncharacterized protein C12B10.15c [Benincasa hispida]

1.3e-76

86.14

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Query:  MDAENEREKEVILDLDLGRDAVAVDLSGEVHQLPCTIKFDGPCSVSQYFKPKSTGVEVDGLSVKEAYFRGRKLQGATISLPEGYSGYVLGRKSLGKRKAS
        M+AENER+ EVI+D D   D+VA+DLSG+VHQLPC IKFDGPCSVSQYFKPKSTG+E DGLSV+EAYFRGRKLQGATISLPEGYSGYVLG+KSLGKRKAS
Subjt:  MDAENEREKEVILDLDLGRDAVAVDLSGEVHQLPCTIKFDGPCSVSQYFKPKSTGVEVDGLSVKEAYFRGRKLQGATISLPEGYSGYVLGRKSLGKRKAS

Query:  EQSQDSSPWQVKAKFENITYWNHGTLPSQDDTFRRSFHWLTVAQALHQPVSAEDLASASTALKNMS
        EQ Q+SSPWQVKAKF NITYWNH TLPSQDDTF+RSFHWLTVAQALH+PV+AEDLASASTALKNMS
Subjt:  EQSQDSSPWQVKAKFENITYWNHGTLPSQDDTFRRSFHWLTVAQALHQPVSAEDLASASTALKNMS

TrEMBL top hits

e value

%identity

Alignment

A0A1S3C9A8 uncharacterized protein C12B10.15c

7.7e-70

77.98

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Query:  MDAENEREKE--VILDLDLGRDAVAVDLSGEVHQLPCTIKFDGPCSVSQYFKPKSTGVEVDGLSVKEAYFRGRKLQGATISLPEGYSGYVLGRKSLGKRK
        M+A+N R+ E  V  D D G D  A+DLSG++HQLPCTIKFDGPC VS YFKPKSTG+EVDGL+V+EAYFRGRKLQGATISLPEGYSGYVLG+KSLGK K
Subjt:  MDAENEREKE--VILDLDLGRDAVAVDLSGEVHQLPCTIKFDGPCSVSQYFKPKSTGVEVDGLSVKEAYFRGRKLQGATISLPEGYSGYVLGRKSLGKRK

Query:  ASEQSQDSSPWQVKAKFENITYWNHGTLPSQDDTFRRSFHWLTVAQALHQPVSAEDLASASTALKNMS
        +S+Q  DSSPWQVKAKF+NITYWNH TLPSQDDTF+R+FHWLTVAQALH+PV+AEDLASAS AL N+S
Subjt:  ASEQSQDSSPWQVKAKFENITYWNHGTLPSQDDTFRRSFHWLTVAQALHQPVSAEDLASASTALKNMS

A0A5A7TIT8 Ribonuclease H2 subunit C isoform X2

7.7e-70

77.98

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Query:  MDAENEREKE--VILDLDLGRDAVAVDLSGEVHQLPCTIKFDGPCSVSQYFKPKSTGVEVDGLSVKEAYFRGRKLQGATISLPEGYSGYVLGRKSLGKRK
        M+A+N R+ E  V  D D G D  A+DLSG++HQLPCTIKFDGPC VS YFKPKSTG+EVDGL+V+EAYFRGRKLQGATISLPEGYSGYVLG+KSLGK K
Subjt:  MDAENEREKE--VILDLDLGRDAVAVDLSGEVHQLPCTIKFDGPCSVSQYFKPKSTGVEVDGLSVKEAYFRGRKLQGATISLPEGYSGYVLGRKSLGKRK

Query:  ASEQSQDSSPWQVKAKFENITYWNHGTLPSQDDTFRRSFHWLTVAQALHQPVSAEDLASASTALKNMS
        +S+Q  DSSPWQVKAKF+NITYWNH TLPSQDDTF+R+FHWLTVAQALH+PV+AEDLASAS AL N+S
Subjt:  ASEQSQDSSPWQVKAKFENITYWNHGTLPSQDDTFRRSFHWLTVAQALHQPVSAEDLASASTALKNMS

A0A6J1CLH6 ribonuclease H2 subunit C

1.6e-75

86.14

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Query:  MDAENEREKEVILDLDLGRDAVAVDLSGEVHQLPCTIKFDGPCSVSQYFKPKSTGVEVDGLSVKEAYFRGRKLQGATISLPEGYSGYVLGRKSLGKRKAS
        MDAENER++EVI+DLDLGRD+ AVDLSG+VHQLPCT+K DGPCSVS YFKPK TG+EVDGLSV+EAYFRGRKLQGATISLPEGYSG+VLGRK LGKRKAS
Subjt:  MDAENEREKEVILDLDLGRDAVAVDLSGEVHQLPCTIKFDGPCSVSQYFKPKSTGVEVDGLSVKEAYFRGRKLQGATISLPEGYSGYVLGRKSLGKRKAS

Query:  EQSQDSSPWQVKAKFENITYWNHGTLPSQDDTFRRSFHWLTVAQALHQPVSAEDLASASTALKNMS
        EQSQDS  W+VKAKF NITYWNH TLPSQDD FRRSFHWLTVAQALHQPV+AEDLASASTA K+MS
Subjt:  EQSQDSSPWQVKAKFENITYWNHGTLPSQDDTFRRSFHWLTVAQALHQPVSAEDLASASTALKNMS

A0A6J1EN41 uncharacterized protein C12B10.15c

1.2e-75

83.73

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Query:  MDAENEREKEVILDLDLGRDAVAVDLSGEVHQLPCTIKFDGPCSVSQYFKPKSTGVEVDGLSVKEAYFRGRKLQGATISLPEGYSGYVLGRKSLGKRKAS
        MD+E ER++EVI+D D G D+ AVDLSG+VHQLPC +KFDGPCSVSQYFKPKSTG+EVDGLSV+ AYFRGRKLQGATISLPEGYSGYV+GRKS GKRKAS
Subjt:  MDAENEREKEVILDLDLGRDAVAVDLSGEVHQLPCTIKFDGPCSVSQYFKPKSTGVEVDGLSVKEAYFRGRKLQGATISLPEGYSGYVLGRKSLGKRKAS

Query:  EQSQDSSPWQVKAKFENITYWNHGTLPSQDDTFRRSFHWLTVAQALHQPVSAEDLASASTALKNMS
        E+SQDSS WQVKAKFENITYWNH TLP+QDDTF+RSFHWLTVAQALH+PV+AEDLA+AS ALKNMS
Subjt:  EQSQDSSPWQVKAKFENITYWNHGTLPSQDDTFRRSFHWLTVAQALHQPVSAEDLASASTALKNMS

A0A6J1KH29 uncharacterized protein C12B10.15c

2.1e-75

83.73

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Query:  MDAENEREKEVILDLDLGRDAVAVDLSGEVHQLPCTIKFDGPCSVSQYFKPKSTGVEVDGLSVKEAYFRGRKLQGATISLPEGYSGYVLGRKSLGKRKAS
        MD+E ER++EVI+D D G D+ AVDLSG+VHQLPC +KFDGPCSVSQYFKPKSTG+EVDGLSV+ AYFRGRKLQGATISLPEGY GYV+GRKSL KRKAS
Subjt:  MDAENEREKEVILDLDLGRDAVAVDLSGEVHQLPCTIKFDGPCSVSQYFKPKSTGVEVDGLSVKEAYFRGRKLQGATISLPEGYSGYVLGRKSLGKRKAS

Query:  EQSQDSSPWQVKAKFENITYWNHGTLPSQDDTFRRSFHWLTVAQALHQPVSAEDLASASTALKNMS
        E+SQDSS WQVKAKFENITYWNH TLP+QDDTF+RSFHWLTVAQALH+PV+AEDLA ASTALKNMS
Subjt:  EQSQDSSPWQVKAKFENITYWNHGTLPSQDDTFRRSFHWLTVAQALHQPVSAEDLASASTALKNMS

SwissProt top hits

e value

%identity

Alignment

Q10448 Uncharacterized protein C12B10.15c

1.2e-08

33.33

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Query:  LPCTIKFDGPCSVSQYFKPKSTGVEVDGLSVKEAYFRGRKLQGATISLPEGYSG-YVLGRKSLGKRKASEQSQDSSPWQVKAKFENITYWNHGTL-PSQD
        LPC I +DGP  V +YF  K   +  +  S      RGR+L G  + LPE Y+G  VL    L   + SE+    S W + + FE +  WN   +  S+ 
Subjt:  LPCTIKFDGPCSVSQYFKPKSTGVEVDGLSVKEAYFRGRKLQGATISLPEGYSG-YVLGRKSLGKRKASEQSQDSSPWQVKAKFENITYWNHGTL-PSQD

Query:  DTFRRS-FHWLTVA
        D ++R    W+  A
Subjt:  DTFRRS-FHWLTVA

Arabidopsis top hits

e value

%identity

Alignment

AT2G39440.1 CONTAINS InterPro DOMAIN/s: Ribonuclease H2, subunit C (InterPro:IPR013924); Has 30201 Blast hits to 17322 proteins in 780 species: Archae - 12; Bacteria - 1396; Metazoa - 17338; Fungi - 3422; Plants - 5037; Viruses - 0; Other Eukaryotes - 2996 (source: NCBI BLink).

7.9e-51

64.14

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Query:  VDLSGEVHQLPCTIKFDGPCSVSQYFKPKSTGVEVDGLSVKEAYFRGRKLQGATISLPEGYSGYVLGRKS----LGKRKASEQSQDSSPWQVKAKFENIT
        VDLS +VHQLPC I+FDGP  VS YFKPKS+ VE+DG+  +EA+FRGRKLQGATISLP GYSG+VL + S     GKRKAS  ++D+  W+VKAKF N+T
Subjt:  VDLSGEVHQLPCTIKFDGPCSVSQYFKPKSTGVEVDGLSVKEAYFRGRKLQGATISLPEGYSGYVLGRKS----LGKRKASEQSQDSSPWQVKAKFENIT

Query:  YWNHGTLPSQDDTFRRSFHWLTVAQALHQPVSAEDLASASTALKN
        YWNH +LPS+DDTF RSFHW ++A+ALH+PV  EDL + S   KN
Subjt:  YWNHGTLPSQDDTFRRSFHWLTVAQALHQPVSAEDLASASTALKN

Sequences

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CDS sequence

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ATGGATGCGGAAAACGAGAGGGAAAAGGAAGTAATTCTGGATCTTGATCTTGGGAGGGACGCGGTTGCTGTCGATCTGAGCGGTGAAGTCCATCAGCTTCCCTGTACCAT
TAAATTCGATGGTCCTTGCTCTGTTTCTCAATACTTCAAACCCAAATCCACTGGAGTTGAAGTTGATGGTTTGAGCGTTAAGGAAGCTTATTTCAGAGGAAGAAAGTTGC
AGGGAGCTACCATTTCCCTTCCAGAAGGTTACTCTGGCTATGTTTTAGGGAGGAAAAGTCTTGGAAAGAGAAAAGCTTCTGAACAGTCTCAGGACTCAAGCCCTTGGCAG
GTGAAAGCCAAGTTTGAAAACATTACATATTGGAATCATGGCACTCTACCTTCACAGGATGATACGTTCCGGCGTTCTTTTCACTGGCTTACCGTTGCACAAGCATTGCA
CCAACCGGTGTCAGCAGAAGACTTGGCATCTGCATCTACTGCTCTCAAGAACATGAGTTGA

mRNA sequence

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Protein sequence

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MDAENEREKEVILDLDLGRDAVAVDLSGEVHQLPCTIKFDGPCSVSQYFKPKSTGVEVDGLSVKEAYFRGRKLQGATISLPEGYSGYVLGRKSLGKRKASEQSQDSSPWQ
VKAKFENITYWNHGTLPSQDDTFRRSFHWLTVAQALHQPVSAEDLASASTALKNMS

Sgr020821 (gene) of Monk fruit (Qingpiguo) v1 genome