CuGenDBv2

Gene ID	Sgr022173
Organism	Siraitia grosvenorii cv. Qingpiguo (Monk fruit (Qingpiguo) v1)
Description	protein RETICULATA-RELATED 1, chloroplastic
Genome location	tig00153941:305816..306429
RNA-Seq Expression	Sgr022173
Synteny	Sgr022173
Gene Ontology terms	GO:0006629 - lipid metabolic process (biological process) GO:0044237 - cellular metabolic process (biological process) GO:0099402 - plant organ development (biological process) GO:0016021 - integral component of membrane (cellular component) GO:0031969 - chloroplast membrane (cellular component)
InterPro domains	NA

Homology

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GenBank top hits

e value

%identity

Alignment

KAA0057328.1 protein RETICULATA-RELATED 1 [Cucumis melo var. makuwa]

1.2e-38

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Query:  MSHAVFQTAQIMPINTQLPTTKLWLPPVVKLGPCQAIAYPFARRTQRSKPILVVKAFTTFSP----PPSSAVSDGDSIALLESCFVAPSAPAGSDPTLA-
        MSHAVFQTAQIMPINTQL T KLWLP VVKLGP           + R++ +LVVKAFTT SP      SS V  GDSIA LE CF  PSAPAGSDP LA 
Subjt:  MSHAVFQTAQIMPINTQLPTTKLWLPPVVKLGPCQAIAYPFARRTQRSKPILVVKAFTTFSP----PPSSAVSDGDSIALLESCFVAPSAPAGSDPTLA-

Query:  TSSSFGPVMKGQYGALGSVTLEKSKLDLSQKQSKSGPEANVNLYIVGKAALVYLAIVVFG
        +SSSFGPVMKGQ+GALGSVTLEKSKLDLSQKQSKS PEA+   +   +    Y A+V+ G
Subjt:  TSSSFGPVMKGQYGALGSVTLEKSKLDLSQKQSKSGPEANVNLYIVGKAALVYLAIVVFG

XP_022155012.1 protein RETICULATA-RELATED 1, chloroplastic [Momordica charantia]

4.4e-41

74.29

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Query:  MSHAVFQTAQIMPINTQLPTTKLWL---PPVVKLGPCQAIAYPFARRTQRSKPILVVKAFTTFSP-PPSSAVSDGDSIALLESCFVAPSAPAGSDPTLAT
        M+HAVFQTAQIMPINTQLPTTKLWL   PP+VKLGP Q         T RSKP+LVVKAFTT SP   SSAVSDGDSIALLE CFVAPSAPA +     +
Subjt:  MSHAVFQTAQIMPINTQLPTTKLWL---PPVVKLGPCQAIAYPFARRTQRSKPILVVKAFTTFSP-PPSSAVSDGDSIALLESCFVAPSAPAGSDPTLAT

Query:  SSSFGPVMKGQYGALGSVTLEKSKLDLSQKQSKSGPEANV
        SSS GPVMKGQYG+LGSVTLEKSKLDLSQKQSKS PE  +
Subjt:  SSSFGPVMKGQYGALGSVTLEKSKLDLSQKQSKSGPEANV

XP_022927672.1 protein RETICULATA-RELATED 1, chloroplastic [Cucurbita moschata]

1.8e-39

67.83

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Query:  MSHAVFQTAQIMPINTQLPTTKLWLPPVVKLGPCQAIAYPFARRTQRSKPILVVKAFTTFSPPP-----SSAVSDGDSIALLESCFVAPSAPAGSDPTL-
        MSHAVFQTAQIMPI+TQLPTTKLWLPP VKLG C           QR++ +LVVKA TTFSPPP     SS  SDG+SIALLE CF APS+PAGSD +L 
Subjt:  MSHAVFQTAQIMPINTQLPTTKLWLPPVVKLGPCQAIAYPFARRTQRSKPILVVKAFTTFSPPP-----SSAVSDGDSIALLESCFVAPSAPAGSDPTL-

Query:  -ATSSSFGPVMKGQYGALGSVTLEKSKLDLSQKQSKSGPEANV
          +SSS GPVMKG+YGALG+VTLEKSKLD+SQKQ++S PE  +
Subjt:  -ATSSSFGPVMKGQYGALGSVTLEKSKLDLSQKQSKSGPEANV

XP_022989621.1 protein RETICULATA-RELATED 1, chloroplastic [Cucurbita maxima]

1.8e-39

67.83

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Query:  MSHAVFQTAQIMPINTQLPTTKLWLPPVVKLGPCQAIAYPFARRTQRSKPILVVKAFTTFSPPP-----SSAVSDGDSIALLESCFVAPSAPAGSDPTL-
        MSHAVFQTAQIMPI+TQLPTTKLWLPP VKLG C           QR++ +LVVKA TTFSPPP     SS  SDG+SIALLE CF APS+PAGSD +L 
Subjt:  MSHAVFQTAQIMPINTQLPTTKLWLPPVVKLGPCQAIAYPFARRTQRSKPILVVKAFTTFSPPP-----SSAVSDGDSIALLESCFVAPSAPAGSDPTL-

Query:  -ATSSSFGPVMKGQYGALGSVTLEKSKLDLSQKQSKSGPEANV
          +SSS GPVMKG+YGALG+VTLEKSKLD+SQKQ++S PE  +
Subjt:  -ATSSSFGPVMKGQYGALGSVTLEKSKLDLSQKQSKSGPEANV

XP_038888281.1 protein RETICULATA-RELATED 1, chloroplastic [Benincasa hispida]

3.7e-40

70.92

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Query:  MSHAVFQTAQIMPINTQLPTTKLWLPPVVKLGPCQAIAYPFARRTQRSKPILVVKAFTTFSPPPSSAVSDG----DSIALLESCFVAPSAPAGSDPTLA-
        MSHAVFQTAQIMPINTQLPT KLWLP  VKLGPC            R++ +LVVKAFTT  P  SS+ S G    DSIALLE CF APSAPAG DP +A 
Subjt:  MSHAVFQTAQIMPINTQLPTTKLWLPPVVKLGPCQAIAYPFARRTQRSKPILVVKAFTTFSPPPSSAVSDG----DSIALLESCFVAPSAPAGSDPTLA-

Query:  TSSSFGPVMKGQYGALGSVTLEKSKLDLSQKQSKSGPEANV
        +SSSFGPVMKGQYGALGSVTLEKSKLDLSQKQSKS PE  +
Subjt:  TSSSFGPVMKGQYGALGSVTLEKSKLDLSQKQSKSGPEANV

TrEMBL top hits

e value

%identity

Alignment

A0A1S3BMX1 protein RETICULATA-RELATED 1, chloroplastic

1.3e-38

70.21

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Query:  MSHAVFQTAQIMPINTQLPTTKLWLPPVVKLGPCQAIAYPFARRTQRSKPILVVKAFTTFSP----PPSSAVSDGDSIALLESCFVAPSAPAGSDPTLA-
        MSHAVFQTAQIMPINTQL T KLWLP VVKLGP           + R++ +LVVKAFTT SP      SS V  GDSIA LE CF  PSAPAGSDP LA 
Subjt:  MSHAVFQTAQIMPINTQLPTTKLWLPPVVKLGPCQAIAYPFARRTQRSKPILVVKAFTTFSP----PPSSAVSDGDSIALLESCFVAPSAPAGSDPTLA-

Query:  TSSSFGPVMKGQYGALGSVTLEKSKLDLSQKQSKSGPEANV
        +SSSFGPVMKGQ+GALGSVTLEKSKLDLSQKQSKS PE  +
Subjt:  TSSSFGPVMKGQYGALGSVTLEKSKLDLSQKQSKSGPEANV

A0A5D3CSL0 Protein RETICULATA-RELATED 1

5.8e-39

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Query:  MSHAVFQTAQIMPINTQLPTTKLWLPPVVKLGPCQAIAYPFARRTQRSKPILVVKAFTTFSP----PPSSAVSDGDSIALLESCFVAPSAPAGSDPTLA-
        MSHAVFQTAQIMPINTQL T KLWLP VVKLGP           + R++ +LVVKAFTT SP      SS V  GDSIA LE CF  PSAPAGSDP LA 
Subjt:  MSHAVFQTAQIMPINTQLPTTKLWLPPVVKLGPCQAIAYPFARRTQRSKPILVVKAFTTFSP----PPSSAVSDGDSIALLESCFVAPSAPAGSDPTLA-

Query:  TSSSFGPVMKGQYGALGSVTLEKSKLDLSQKQSKSGPEANVNLYIVGKAALVYLAIVVFG
        +SSSFGPVMKGQ+GALGSVTLEKSKLDLSQKQSKS PEA+   +   +    Y A+V+ G
Subjt:  TSSSFGPVMKGQYGALGSVTLEKSKLDLSQKQSKSGPEANVNLYIVGKAALVYLAIVVFG

A0A6J1DN85 protein RETICULATA-RELATED 1, chloroplastic

2.1e-41

74.29

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Query:  MSHAVFQTAQIMPINTQLPTTKLWL---PPVVKLGPCQAIAYPFARRTQRSKPILVVKAFTTFSP-PPSSAVSDGDSIALLESCFVAPSAPAGSDPTLAT
        M+HAVFQTAQIMPINTQLPTTKLWL   PP+VKLGP Q         T RSKP+LVVKAFTT SP   SSAVSDGDSIALLE CFVAPSAPA +     +
Subjt:  MSHAVFQTAQIMPINTQLPTTKLWL---PPVVKLGPCQAIAYPFARRTQRSKPILVVKAFTTFSP-PPSSAVSDGDSIALLESCFVAPSAPAGSDPTLAT

Query:  SSSFGPVMKGQYGALGSVTLEKSKLDLSQKQSKSGPEANV
        SSS GPVMKGQYG+LGSVTLEKSKLDLSQKQSKS PE  +
Subjt:  SSSFGPVMKGQYGALGSVTLEKSKLDLSQKQSKSGPEANV

A0A6J1EHU7 protein RETICULATA-RELATED 1, chloroplastic

8.9e-40

67.83

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Query:  MSHAVFQTAQIMPINTQLPTTKLWLPPVVKLGPCQAIAYPFARRTQRSKPILVVKAFTTFSPPP-----SSAVSDGDSIALLESCFVAPSAPAGSDPTL-
        MSHAVFQTAQIMPI+TQLPTTKLWLPP VKLG C           QR++ +LVVKA TTFSPPP     SS  SDG+SIALLE CF APS+PAGSD +L 
Subjt:  MSHAVFQTAQIMPINTQLPTTKLWLPPVVKLGPCQAIAYPFARRTQRSKPILVVKAFTTFSPPP-----SSAVSDGDSIALLESCFVAPSAPAGSDPTL-

Query:  -ATSSSFGPVMKGQYGALGSVTLEKSKLDLSQKQSKSGPEANV
          +SSS GPVMKG+YGALG+VTLEKSKLD+SQKQ++S PE  +
Subjt:  -ATSSSFGPVMKGQYGALGSVTLEKSKLDLSQKQSKSGPEANV

A0A6J1JKL8 protein RETICULATA-RELATED 1, chloroplastic

8.9e-40

67.83

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Query:  MSHAVFQTAQIMPINTQLPTTKLWLPPVVKLGPCQAIAYPFARRTQRSKPILVVKAFTTFSPPP-----SSAVSDGDSIALLESCFVAPSAPAGSDPTL-
        MSHAVFQTAQIMPI+TQLPTTKLWLPP VKLG C           QR++ +LVVKA TTFSPPP     SS  SDG+SIALLE CF APS+PAGSD +L 
Subjt:  MSHAVFQTAQIMPINTQLPTTKLWLPPVVKLGPCQAIAYPFARRTQRSKPILVVKAFTTFSPPP-----SSAVSDGDSIALLESCFVAPSAPAGSDPTL-

Query:  -ATSSSFGPVMKGQYGALGSVTLEKSKLDLSQKQSKSGPEANV
          +SSS GPVMKG+YGALG+VTLEKSKLD+SQKQ++S PE  +
Subjt:  -ATSSSFGPVMKGQYGALGSVTLEKSKLDLSQKQSKSGPEANV

SwissProt top hits	e value	%identity	Alignment
No hits found

Arabidopsis top hits

e value

%identity

Alignment

AT5G24690.1 Protein of unknown function (DUF3411)

8.0e-09

34.56

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Query:  MSHAVFQTAQIMPINTQLPTTKLWLPPVVKLGPCQAIAYPFARRTQRSKPILVVKAFTTFSPPPSSAVSDGDSIALLESCFVAPSA---PAGSDPTLATS
        MSH VFQ+  + P             P+  L PC  I  P       + P  + + F   S   SS+    DS++ LE C   PS       S  + + S
Subjt:  MSHAVFQTAQIMPINTQLPTTKLWLPPVVKLGPCQAIAYPFARRTQRSKPILVVKAFTTFSPPPSSAVSDGDSIALLESCFVAPSA---PAGSDPTLATS

Query:  SSFGPVMKGQYGALGSVTLEKSKLDLSQKQSKSGPE
        +   PVMKG++G++G+VTLEK KLD++QK S++ PE
Subjt:  SSFGPVMKGQYGALGSVTLEKSKLDLSQKQSKSGPE

Sequences

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CDS sequence

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ATGTCTCATGCGGTGTTCCAAACGGCTCAAATCATGCCCATTAACACCCAGCTTCCAACCACCAAGCTATGGCTGCCGCCGGTTGTCAAGCTCGGCCCTTGTCAGGCTAT
TGCTTATCCGTTTGCCAGGAGGACTCAACGAAGCAAACCAATTCTGGTGGTGAAGGCCTTTACCACTTTTTCTCCTCCTCCTTCTTCGGCTGTTTCAGATGGGGATTCCA
TTGCACTGTTAGAGAGTTGCTTTGTGGCGCCATCAGCGCCTGCTGGTTCTGATCCGACTCTCGCCACATCTTCCTCTTTCGGTCCTGTTATGAAAGGGCAATATGGTGCC
CTTGGTTCTGTTACCTTGGAGAAATCCAAGCTTGATTTATCTCAGAAGCAATCAAAATCAGGCCCCGAGGCAAATGTGAATCTTTACATTGTTGGAAAAGCAGCTTTAGT
TTATTTGGCTATTGTTGTGTTTGGTTTGGCTCCCTTTTCTGAGAGCCAGTATCTTAACTTTAAAGTTCTTGCGACTTACATTTCTGGCGGTTGA

mRNA sequence

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Protein sequence

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MSHAVFQTAQIMPINTQLPTTKLWLPPVVKLGPCQAIAYPFARRTQRSKPILVVKAFTTFSPPPSSAVSDGDSIALLESCFVAPSAPAGSDPTLATSSSFGPVMKGQYGA
LGSVTLEKSKLDLSQKQSKSGPEANVNLYIVGKAALVYLAIVVFGLAPFSESQYLNFKVLATYISGG

Sgr022173 (gene) of Monk fruit (Qingpiguo) v1 genome