CuGenDBv2

Gene ID	Sgr022644
Organism	Siraitia grosvenorii cv. Qingpiguo (Monk fruit (Qingpiguo) v1)
Description	RRM domain-containing protein
Genome location	tig00000289:1893836..1896137
RNA-Seq Expression	Sgr022644
Synteny	Sgr022644
Gene Ontology terms	GO:0006397 - mRNA processing (biological process) GO:0016554 - cytidine to uridine editing (biological process) GO:0055085 - transmembrane transport (biological process) GO:0080156 - mitochondrial mRNA modification (biological process) GO:0005739 - mitochondrion (cellular component) GO:0016021 - integral component of membrane (cellular component) GO:0003723 - RNA binding (molecular function) GO:0022857 - transmembrane transporter activity (molecular function)
InterPro domains	IPR000504 - RNA recognition motif domain IPR012677 - Nucleotide-binding alpha-beta plait domain superfamily IPR035979 - RNA-binding domain superfamily IPR039206 - MORF/ORRM1/DAG-like

Homology

Show/hide homology

GenBank top hits

e value

%identity

Alignment

KAG7032943.1 Organelle RRM domain-containing protein 1, chloroplastic, partial [Cucurbita argyrosperma subsp. argyrosperma]

1.1e-65

97.04

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Query:  VPGVLSVQRDANFEAENKDYGGNNAKNPLDLPDSSETNQRTPVKTKKLFITGLSFYTSEKTLRAAFEGFGELVEVKIIMDKISKRSKGYAFVEYTTEEAA
        VPGVLSVQ DANFEAENKDYGG  AKNPLDLPDSSETNQ TPVKTKKLFITGLSFYTSEKTLRAAFEGFGELVEVKIIMDKISKRSKGYAFVEYTTEEAA
Subjt:  VPGVLSVQRDANFEAENKDYGGNNAKNPLDLPDSSETNQRTPVKTKKLFITGLSFYTSEKTLRAAFEGFGELVEVKIIMDKISKRSKGYAFVEYTTEEAA

Query:  GAALKEMNGKIINGWMIVVDVAKPSPRRYGGNRSR
        GAALKEMNGKIINGWMIVVDVAKPSPRRYGGNRSR
Subjt:  GAALKEMNGKIINGWMIVVDVAKPSPRRYGGNRSR

XP_008456591.1 PREDICTED: uncharacterized protein LOC103496502 [Cucumis melo]

3.7e-64

94.81

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Query:  VPGVLSVQRDANFEAENKDYGGNNAKNPLDLPDSSETNQRTPVKTKKLFITGLSFYTSEKTLRAAFEGFGELVEVKIIMDKISKRSKGYAFVEYTTEEAA
        VPGVLSVQ DANFEAENKDYGGN AKNPLDLPDSS T+Q TPVKTKKLFITGLSFYTSEKTLRAAFEGFGELVEVKIIMDKISKRSKGYAF+EYTTEEAA
Subjt:  VPGVLSVQRDANFEAENKDYGGNNAKNPLDLPDSSETNQRTPVKTKKLFITGLSFYTSEKTLRAAFEGFGELVEVKIIMDKISKRSKGYAFVEYTTEEAA

Query:  GAALKEMNGKIINGWMIVVDVAKPSPRRYGGNRSR
         AALKEMNGKIINGWMIVVDVAKPSPRRYGGNRSR
Subjt:  GAALKEMNGKIINGWMIVVDVAKPSPRRYGGNRSR

XP_022960805.1 organelle RRM domain-containing protein 1, chloroplastic [Cucurbita moschata]

1.1e-65

97.04

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Query:  VPGVLSVQRDANFEAENKDYGGNNAKNPLDLPDSSETNQRTPVKTKKLFITGLSFYTSEKTLRAAFEGFGELVEVKIIMDKISKRSKGYAFVEYTTEEAA
        VPGVLSVQ DANFEAENKDYGG  AKNPLDLPDSSETNQ TPVKTKKLFITGLSFYTSEKTLRAAFEGFGELVEVKIIMDKISKRSKGYAFVEYTTEEAA
Subjt:  VPGVLSVQRDANFEAENKDYGGNNAKNPLDLPDSSETNQRTPVKTKKLFITGLSFYTSEKTLRAAFEGFGELVEVKIIMDKISKRSKGYAFVEYTTEEAA

Query:  GAALKEMNGKIINGWMIVVDVAKPSPRRYGGNRSR
        GAALKEMNGKIINGWMIVVDVAKPSPRRYGGNRSR
Subjt:  GAALKEMNGKIINGWMIVVDVAKPSPRRYGGNRSR

XP_022990376.1 organelle RRM domain-containing protein 1, chloroplastic isoform X2 [Cucurbita maxima]

1.5e-65

96.3

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Query:  VPGVLSVQRDANFEAENKDYGGNNAKNPLDLPDSSETNQRTPVKTKKLFITGLSFYTSEKTLRAAFEGFGELVEVKIIMDKISKRSKGYAFVEYTTEEAA
        VPGVLSVQ DANFEAENKDYGG  AKNPLDLPDSSETNQ TPVKTKKLFITGLSFYTSEKTLRAAFEGFGELVEVKIIMDKISKRSKGYAF+EYTTEEAA
Subjt:  VPGVLSVQRDANFEAENKDYGGNNAKNPLDLPDSSETNQRTPVKTKKLFITGLSFYTSEKTLRAAFEGFGELVEVKIIMDKISKRSKGYAFVEYTTEEAA

Query:  GAALKEMNGKIINGWMIVVDVAKPSPRRYGGNRSR
        GAALKEMNGKIINGWMIVVDVAKPSPRRYGGNRSR
Subjt:  GAALKEMNGKIINGWMIVVDVAKPSPRRYGGNRSR

XP_023524278.1 organelle RRM domain-containing protein 1, chloroplastic [Cucurbita pepo subsp. pepo]

1.5e-65

96.3

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Query:  VPGVLSVQRDANFEAENKDYGGNNAKNPLDLPDSSETNQRTPVKTKKLFITGLSFYTSEKTLRAAFEGFGELVEVKIIMDKISKRSKGYAFVEYTTEEAA
        VPGVLSVQ DANFEAENKDYGG  AKNPLDLPDSSETNQ TPVKTKKLFITGLSFYTSEKTLRAAFEGFGELVEVKIIMDKISKRSKGYAF+EYTTEEAA
Subjt:  VPGVLSVQRDANFEAENKDYGGNNAKNPLDLPDSSETNQRTPVKTKKLFITGLSFYTSEKTLRAAFEGFGELVEVKIIMDKISKRSKGYAFVEYTTEEAA

Query:  GAALKEMNGKIINGWMIVVDVAKPSPRRYGGNRSR
        GAALKEMNGKIINGWMIVVDVAKPSPRRYGGNRSR
Subjt:  GAALKEMNGKIINGWMIVVDVAKPSPRRYGGNRSR

TrEMBL top hits

e value

%identity

Alignment

A0A1S3C4A1 uncharacterized protein LOC103496502

1.8e-64

94.81

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Query:  VPGVLSVQRDANFEAENKDYGGNNAKNPLDLPDSSETNQRTPVKTKKLFITGLSFYTSEKTLRAAFEGFGELVEVKIIMDKISKRSKGYAFVEYTTEEAA
        VPGVLSVQ DANFEAENKDYGGN AKNPLDLPDSS T+Q TPVKTKKLFITGLSFYTSEKTLRAAFEGFGELVEVKIIMDKISKRSKGYAF+EYTTEEAA
Subjt:  VPGVLSVQRDANFEAENKDYGGNNAKNPLDLPDSSETNQRTPVKTKKLFITGLSFYTSEKTLRAAFEGFGELVEVKIIMDKISKRSKGYAFVEYTTEEAA

Query:  GAALKEMNGKIINGWMIVVDVAKPSPRRYGGNRSR
         AALKEMNGKIINGWMIVVDVAKPSPRRYGGNRSR
Subjt:  GAALKEMNGKIINGWMIVVDVAKPSPRRYGGNRSR

A0A5D3CJP7 RRM domain-containing protein

1.8e-64

94.81

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Query:  VPGVLSVQRDANFEAENKDYGGNNAKNPLDLPDSSETNQRTPVKTKKLFITGLSFYTSEKTLRAAFEGFGELVEVKIIMDKISKRSKGYAFVEYTTEEAA
        VPGVLSVQ DANFEAENKDYGGN AKNPLDLPDSS T+Q TPVKTKKLFITGLSFYTSEKTLRAAFEGFGELVEVKIIMDKISKRSKGYAF+EYTTEEAA
Subjt:  VPGVLSVQRDANFEAENKDYGGNNAKNPLDLPDSSETNQRTPVKTKKLFITGLSFYTSEKTLRAAFEGFGELVEVKIIMDKISKRSKGYAFVEYTTEEAA

Query:  GAALKEMNGKIINGWMIVVDVAKPSPRRYGGNRSR
         AALKEMNGKIINGWMIVVDVAKPSPRRYGGNRSR
Subjt:  GAALKEMNGKIINGWMIVVDVAKPSPRRYGGNRSR

A0A6J1HA56 organelle RRM domain-containing protein 1, chloroplastic

5.5e-66

97.04

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Query:  VPGVLSVQRDANFEAENKDYGGNNAKNPLDLPDSSETNQRTPVKTKKLFITGLSFYTSEKTLRAAFEGFGELVEVKIIMDKISKRSKGYAFVEYTTEEAA
        VPGVLSVQ DANFEAENKDYGG  AKNPLDLPDSSETNQ TPVKTKKLFITGLSFYTSEKTLRAAFEGFGELVEVKIIMDKISKRSKGYAFVEYTTEEAA
Subjt:  VPGVLSVQRDANFEAENKDYGGNNAKNPLDLPDSSETNQRTPVKTKKLFITGLSFYTSEKTLRAAFEGFGELVEVKIIMDKISKRSKGYAFVEYTTEEAA

Query:  GAALKEMNGKIINGWMIVVDVAKPSPRRYGGNRSR
        GAALKEMNGKIINGWMIVVDVAKPSPRRYGGNRSR
Subjt:  GAALKEMNGKIINGWMIVVDVAKPSPRRYGGNRSR

A0A6J1JMS7 organelle RRM domain-containing protein 1, chloroplastic isoform X2

7.2e-66

96.3

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Query:  VPGVLSVQRDANFEAENKDYGGNNAKNPLDLPDSSETNQRTPVKTKKLFITGLSFYTSEKTLRAAFEGFGELVEVKIIMDKISKRSKGYAFVEYTTEEAA
        VPGVLSVQ DANFEAENKDYGG  AKNPLDLPDSSETNQ TPVKTKKLFITGLSFYTSEKTLRAAFEGFGELVEVKIIMDKISKRSKGYAF+EYTTEEAA
Subjt:  VPGVLSVQRDANFEAENKDYGGNNAKNPLDLPDSSETNQRTPVKTKKLFITGLSFYTSEKTLRAAFEGFGELVEVKIIMDKISKRSKGYAFVEYTTEEAA

Query:  GAALKEMNGKIINGWMIVVDVAKPSPRRYGGNRSR
        GAALKEMNGKIINGWMIVVDVAKPSPRRYGGNRSR
Subjt:  GAALKEMNGKIINGWMIVVDVAKPSPRRYGGNRSR

A0A6J1JPX9 organelle RRM domain-containing protein 1, chloroplastic isoform X1

4.0e-64

93.53

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Query:  VPGVLSVQRDANFEAENKDYG----GNNAKNPLDLPDSSETNQRTPVKTKKLFITGLSFYTSEKTLRAAFEGFGELVEVKIIMDKISKRSKGYAFVEYTT
        VPGVLSVQ DANFEAENKDYG    G  AKNPLDLPDSSETNQ TPVKTKKLFITGLSFYTSEKTLRAAFEGFGELVEVKIIMDKISKRSKGYAF+EYTT
Subjt:  VPGVLSVQRDANFEAENKDYG----GNNAKNPLDLPDSSETNQRTPVKTKKLFITGLSFYTSEKTLRAAFEGFGELVEVKIIMDKISKRSKGYAFVEYTT

Query:  EEAAGAALKEMNGKIINGWMIVVDVAKPSPRRYGGNRSR
        EEAAGAALKEMNGKIINGWMIVVDVAKPSPRRYGGNRSR
Subjt:  EEAAGAALKEMNGKIINGWMIVVDVAKPSPRRYGGNRSR

SwissProt top hits

e value

%identity

Alignment

C0HFE5 Organelle RRM domain-containing protein 1, chloroplastic

6.4e-43

73.23

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Query:  VPGVLSVQRDANFEAENKDYGGNNAKNPLDLPDSSETNQRTPVKTKKLFITGLSFYTSEKTLRAAFEGFGELVEVKIIMDKISKRSKGYAFVEYTTEEAA
        VPGVLSVQ D NF ++NK+Y G+      D   SSE      +KTK+LF+TGLSFYTSEKTLRAAFE FGELVEVKIIMD+ISKRSKGYAFVEYTTEEA 
Subjt:  VPGVLSVQRDANFEAENKDYGGNNAKNPLDLPDSSETNQRTPVKTKKLFITGLSFYTSEKTLRAAFEGFGELVEVKIIMDKISKRSKGYAFVEYTTEEAA

Query:  GAALKEMNGKIINGWMIVVDVAKPSPR
        GAALK MNG+IINGWMIVVDVAK   R
Subjt:  GAALKEMNGKIINGWMIVVDVAKPSPR

Q6YWP9 Organelle RRM domain-containing protein 1, chloroplastic

5.4e-42

74.02

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Query:  VPGVLSVQRDANFEAENKDYGGNNAKNPLDLPDSSETNQRTPVKTKKLFITGLSFYTSEKTLRAAFEGFGELVEVKIIMDKISKRSKGYAFVEYTTEEAA
        V GVLSVQ D NF ++NK+Y G+      D   SSE  Q   VKTK+LF+TGLSFYTSEKTLRAAFE FGELVEVKIIMDKISKRSKGYAF+EYTTEEA 
Subjt:  VPGVLSVQRDANFEAENKDYGGNNAKNPLDLPDSSETNQRTPVKTKKLFITGLSFYTSEKTLRAAFEGFGELVEVKIIMDKISKRSKGYAFVEYTTEEAA

Query:  GAALKEMNGKIINGWMIVVDVAKPSPR
        GAALK MNG+IINGWMIVVDVAK   R
Subjt:  GAALKEMNGKIINGWMIVVDVAKPSPR

Q8L440 Organelle RRM domain-containing protein 1, chloroplastic

3.3e-47

75.56

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Query:  VPGVLSVQRDANFEAENKDYGGNNAKNPLDLPDSSETNQRTPVKTKKLFITGLSFYTSEKTLRAAFEGFGELVEVKIIMDKISKRSKGYAFVEYTTEEAA
        VPGVL+V  D +FE+ NKDY G++ ++  D  DS    +  PVKTKKLFITGLSFYTSEKTLRAAFEGFGELVEVKIIMDKISKRSKGYAF+EYTTEEAA
Subjt:  VPGVLSVQRDANFEAENKDYGGNNAKNPLDLPDSSETNQRTPVKTKKLFITGLSFYTSEKTLRAAFEGFGELVEVKIIMDKISKRSKGYAFVEYTTEEAA

Query:  GAALKEMNGKIINGWMIVVDVAKPSPRRYGGNRSR
        G ALKEMNGKIINGWMIVVDVAK  P R   NRS+
Subjt:  GAALKEMNGKIINGWMIVVDVAKPSPRRYGGNRSR

Q9FX45 Organelle RRM domain-containing protein 6, chloroplastic

1.0e-16

39.67

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Query:  GVLSVQRDANFEAENKDYGGNNAKNPLDLPDSSETNQRTPVKTKKLFITGLSFYTSEKTLRAAFEGFGELVEVKIIMDKISKRSKGYAFVEYTTEEAAGA
        GV+S +R        +D GG    + L    SS     +     KL+++GLSF T+E TLR  FE FG L+ + ++MDK++ R KG+AF+ Y TEE A  
Subjt:  GVLSVQRDANFEAENKDYGGNNAKNPLDLPDSSETNQRTPVKTKKLFITGLSFYTSEKTLRAAFEGFGELVEVKIIMDKISKRSKGYAFVEYTTEEAAGA

Query:  ALKEMNGKIINGWMIVVDVAK
        A++ M+GK ++G +I V+ AK
Subjt:  ALKEMNGKIINGWMIVVDVAK

Q9SVM8 Glycine-rich RNA-binding protein 2, mitochondrial

1.6e-14

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Query:  KLFITGLSFYTSEKTLRAAFEGFGELVEVKIIMDKISKRSKGYAFVEYTTEEAAGAALKEMNGKIINGWMIVVDVA--KPS-PRRYGG
        KLFI GLS+ T + +LR AF  FG++V+ K+I+D+ + RS+G+ FV +  E AA AA+ EM+GK +NG  I V+ A  +PS PR YGG
Subjt:  KLFITGLSFYTSEKTLRAAFEGFGELVEVKIIMDKISKRSKGYAFVEYTTEEAAGAALKEMNGKIINGWMIVVDVA--KPS-PRRYGG

Arabidopsis top hits

e value

%identity

Alignment

AT1G73530.1 RNA-binding (RRM/RBD/RNP motifs) family protein

7.3e-18

39.67

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Query:  GVLSVQRDANFEAENKDYGGNNAKNPLDLPDSSETNQRTPVKTKKLFITGLSFYTSEKTLRAAFEGFGELVEVKIIMDKISKRSKGYAFVEYTTEEAAGA
        GV+S +R        +D GG    + L    SS     +     KL+++GLSF T+E TLR  FE FG L+ + ++MDK++ R KG+AF+ Y TEE A  
Subjt:  GVLSVQRDANFEAENKDYGGNNAKNPLDLPDSSETNQRTPVKTKKLFITGLSFYTSEKTLRAAFEGFGELVEVKIIMDKISKRSKGYAFVEYTTEEAAGA

Query:  ALKEMNGKIINGWMIVVDVAK
        A++ M+GK ++G +I V+ AK
Subjt:  ALKEMNGKIINGWMIVVDVAK

AT2G37510.1 RNA-binding (RRM/RBD/RNP motifs) family protein

2.3e-16

49.4

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Query:  KLFITGLSFYTSEKTLRAAFEGFGELVEVKIIMDKISKRSKGYAFVEYTTEEAAGAALKEMNGKIINGWMIVVDVAKP-SPRR
        +LF++GLS  T+ + L+ AF  FG+LV+ ++I D+ S RSKG+ FV Y T E A  A  EMN K ++GW+I VD A+P  PRR
Subjt:  KLFITGLSFYTSEKTLRAAFEGFGELVEVKIIMDKISKRSKGYAFVEYTTEEAAGAALKEMNGKIINGWMIVVDVAKP-SPRR

AT3G20930.1 RNA-binding (RRM/RBD/RNP motifs) family protein

2.3e-48

75.56

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Query:  VPGVLSVQRDANFEAENKDYGGNNAKNPLDLPDSSETNQRTPVKTKKLFITGLSFYTSEKTLRAAFEGFGELVEVKIIMDKISKRSKGYAFVEYTTEEAA
        VPGVL+V  D +FE+ NKDY G++ ++  D  DS    +  PVKTKKLFITGLSFYTSEKTLRAAFEGFGELVEVKIIMDKISKRSKGYAF+EYTTEEAA
Subjt:  VPGVLSVQRDANFEAENKDYGGNNAKNPLDLPDSSETNQRTPVKTKKLFITGLSFYTSEKTLRAAFEGFGELVEVKIIMDKISKRSKGYAFVEYTTEEAA

Query:  GAALKEMNGKIINGWMIVVDVAKPSPRRYGGNRSR
        G ALKEMNGKIINGWMIVVDVAK  P R   NRS+
Subjt:  GAALKEMNGKIINGWMIVVDVAKPSPRRYGGNRSR

AT4G13850.1 glycine-rich RNA-binding protein 2

1.2e-15

Show/hide

Query:  KLFITGLSFYTSEKTLRAAFEGFGELVEVKIIMDKISKRSKGYAFVEYTTEEAAGAALKEMNGKIINGWMIVVDVA--KPS-PRRYGG
        KLFI GLS+ T + +LR AF  FG++V+ K+I+D+ + RS+G+ FV +  E AA AA+ EM+GK +NG  I V+ A  +PS PR YGG
Subjt:  KLFITGLSFYTSEKTLRAAFEGFGELVEVKIIMDKISKRSKGYAFVEYTTEEAAGAALKEMNGKIINGWMIVVDVA--KPS-PRRYGG

AT4G20030.1 RNA-binding (RRM/RBD/RNP motifs) family protein

6.1e-17

44.71

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Query:  KLFITGLSFYTSEKTLRAAFEGFGELVEVKIIMDKISKRSKGYAFVEYTTEEAAGAALKEMNGKIINGWMIVVDVAKPSPRRYGG
        K+ +  L F TSE  L+  F  FGE+ EVK+I D+  KRSKGYAF+++T+++ A  A++ M+ ++ NG MI +D+AKP  R + G
Subjt:  KLFITGLSFYTSEKTLRAAFEGFGELVEVKIIMDKISKRSKGYAFVEYTTEEAAGAALKEMNGKIINGWMIVVDVAKPSPRRYGG

Sequences

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CDS sequence

Show/hide CDS sequence

GTGTACCTGGTGTTTTATCTGTCCAGCGAGATGCAAACTTTGAGGCAGAGAATAAGGATTATGGAGGTAATAATGCCAAGAATCCTTTGGATCTACCAGATTCTTCAGAA
ACAAATCAAAGAACTCCTGTGAAAACAAAGAAACTATTTATAACTGGTCTTTCATTTTATACATCGGAGAAAACCTTACGTGCTGCATTTGAAGGCTTTGGTGAGCTCGT
CGAAGTTAAAATAATAATGGACAAGATTTCCAAAAGGTCCAAGGGCTATGCATTTGTAGAGTATACAACAGAGGAGGCTGCTGGTGCTGCACTCAAGGAGATGAATGGCA
AGATCATCAATGGCTGGATGATAGTCGTTGATGTCGCCAAGCCTAGCCCTCGAAGATACGGTGGAAACCGCTCCAGACTGTAG

mRNA sequence

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Protein sequence

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VPGVLSVQRDANFEAENKDYGGNNAKNPLDLPDSSETNQRTPVKTKKLFITGLSFYTSEKTLRAAFEGFGELVEVKIIMDKISKRSKGYAFVEYTTEEAAGAALKEMNGK
IINGWMIVVDVAKPSPRRYGGNRSRL

Sgr022644 (gene) of Monk fruit (Qingpiguo) v1 genome