CuGenDBv2

Gene ID	Sgr023185
Organism	Siraitia grosvenorii cv. Qingpiguo (Monk fruit (Qingpiguo) v1)
Description	DNA-directed RNA polymerases I, II, and III subunit RPABC5
Genome location	tig00000729:3578779..3579566
RNA-Seq Expression	Sgr023185
Synteny	Sgr023185
Gene Ontology terms	GO:0006360 - transcription by RNA polymerase I (biological process) GO:0006366 - transcription by RNA polymerase II (biological process) GO:0042797 - tRNA transcription by RNA polymerase III (biological process) GO:0005665 - RNA polymerase II, core complex (cellular component) GO:0005666 - RNA polymerase III complex (cellular component) GO:0005736 - RNA polymerase I complex (cellular component) GO:0016021 - integral component of membrane (cellular component) GO:0003677 - DNA binding (molecular function) GO:0003899 - DNA-directed 5'-3' RNA polymerase activity (molecular function) GO:0008270 - zinc ion binding (molecular function)
InterPro domains	IPR000268 - DNA-directed RNA polymerase, subunit N/Rpb10 IPR020789 - RNA polymerases, subunit N, zinc binding site IPR023580 - RNA polymerase subunit RPB10

Homology

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GenBank top hits

e value

%identity

Alignment

KAA0057130.1 DNA-directed RNA polymerases I, II, and III subunit RPABC5 [Cucumis melo var. makuwa]

1.2e-23

98.11

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Query:  MIIPVRCFTCGKVIGNKWDHYLDLLQADYSEGDALDALGLVRYCCRRMLMTHL
        MIIPVRCFTCGKVIGNKWDHYLDLLQADYSEGDALDALGLVRYCCRRMLMTH+
Subjt:  MIIPVRCFTCGKVIGNKWDHYLDLLQADYSEGDALDALGLVRYCCRRMLMTHL

KAG6598222.1 DNA-directed RNA polymerase subunit 10-like protein, partial [Cucurbita argyrosperma subsp. sororia]

1.2e-23

98.11

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Query:  MIIPVRCFTCGKVIGNKWDHYLDLLQADYSEGDALDALGLVRYCCRRMLMTHL
        MIIPVRCFTCGKVIGNKWDHYLDLLQADYSEGDALDALGLVRYCCRRMLMTH+
Subjt:  MIIPVRCFTCGKVIGNKWDHYLDLLQADYSEGDALDALGLVRYCCRRMLMTHL

KHG22319.1 hypothetical protein F383_04492 [Gossypium arboreum]

1.2e-23

70.37

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Query:  MIIPVRCFTCGKVIGNKWDHYLDLLQADYSEGDALDALGLVRYCCRRMLMTHLWISLIPVRAGGQVFCLFMCSSQYWRFMV
        MIIPVRCFTCGKVIGNKWD YLDLLQADY+EGDALDALGLVRYCCRRMLMTH W +  PV      +    CS    R  V
Subjt:  MIIPVRCFTCGKVIGNKWDHYLDLLQADYSEGDALDALGLVRYCCRRMLMTHLWISLIPVRAGGQVFCLFMCSSQYWRFMV

RDX74585.1 DNA-directed RNA polymerase subunit 10-like protein, partial [Mucuna pruriens]

1.1e-26

95.08

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Query:  MIIPVRCFTCGKVIGNKWDHYLDLLQADYSEGDALDALGLVRYCCRRMLMTHLWISLIPVR
        MIIPVRCFTCGKVIGNKWD YLDLLQADYSEGDALDALGLVRYCCRRMLMTHLW SLIPV+
Subjt:  MIIPVRCFTCGKVIGNKWDHYLDLLQADYSEGDALDALGLVRYCCRRMLMTHLWISLIPVR

XP_004138685.1 DNA-directed RNA polymerases I, II, and III subunit RPABC5 [Cucumis sativus]

1.2e-23

98.11

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Query:  MIIPVRCFTCGKVIGNKWDHYLDLLQADYSEGDALDALGLVRYCCRRMLMTHL
        MIIPVRCFTCGKVIGNKWDHYLDLLQADYSEGDALDALGLVRYCCRRMLMTH+
Subjt:  MIIPVRCFTCGKVIGNKWDHYLDLLQADYSEGDALDALGLVRYCCRRMLMTHL

TrEMBL top hits

e value

%identity

Alignment

A0A0B0PD08 Uncharacterized protein

5.6e-24

70.37

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Query:  MIIPVRCFTCGKVIGNKWDHYLDLLQADYSEGDALDALGLVRYCCRRMLMTHLWISLIPVRAGGQVFCLFMCSSQYWRFMV
        MIIPVRCFTCGKVIGNKWD YLDLLQADY+EGDALDALGLVRYCCRRMLMTH W +  PV      +    CS    R  V
Subjt:  MIIPVRCFTCGKVIGNKWDHYLDLLQADYSEGDALDALGLVRYCCRRMLMTHLWISLIPVRAGGQVFCLFMCSSQYWRFMV

A0A371F8G5 DNA-directed RNA polymerase subunit 10-like protein (Fragment)

5.4e-27

95.08

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Query:  MIIPVRCFTCGKVIGNKWDHYLDLLQADYSEGDALDALGLVRYCCRRMLMTHLWISLIPVR
        MIIPVRCFTCGKVIGNKWD YLDLLQADYSEGDALDALGLVRYCCRRMLMTHLW SLIPV+
Subjt:  MIIPVRCFTCGKVIGNKWDHYLDLLQADYSEGDALDALGLVRYCCRRMLMTHLWISLIPVR

A0A5A7UPU3 DNA-directed RNA polymerases I, II, and III subunit RPABC5

5.6e-24

98.11

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Query:  MIIPVRCFTCGKVIGNKWDHYLDLLQADYSEGDALDALGLVRYCCRRMLMTHL
        MIIPVRCFTCGKVIGNKWDHYLDLLQADYSEGDALDALGLVRYCCRRMLMTH+
Subjt:  MIIPVRCFTCGKVIGNKWDHYLDLLQADYSEGDALDALGLVRYCCRRMLMTHL

A0A6J1KEH3 DNA-directed RNA polymerase subunit 10-like protein

5.6e-24

98.11

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Query:  MIIPVRCFTCGKVIGNKWDHYLDLLQADYSEGDALDALGLVRYCCRRMLMTHL
        MIIPVRCFTCGKVIGNKWDHYLDLLQADYSEGDALDALGLVRYCCRRMLMTH+
Subjt:  MIIPVRCFTCGKVIGNKWDHYLDLLQADYSEGDALDALGLVRYCCRRMLMTHL

A0A6J1KRF4 DNA-directed RNA polymerases I, II, and III subunit RPABC5

5.6e-24

98.11

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Query:  MIIPVRCFTCGKVIGNKWDHYLDLLQADYSEGDALDALGLVRYCCRRMLMTHL
        MIIPVRCFTCGKVIGNKWDHYLDLLQADYSEGDALDALGLVRYCCRRMLMTH+
Subjt:  MIIPVRCFTCGKVIGNKWDHYLDLLQADYSEGDALDALGLVRYCCRRMLMTHL

SwissProt top hits

e value

%identity

Alignment

Q32P78 DNA-directed RNA polymerases I, II, and III subunit RPABC5

1.9e-21

79.25

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Query:  MIIPVRCFTCGKVIGNKWDHYLDLLQADYSEGDALDALGLVRYCCRRMLMTHL
        MIIPVRCFTCGK++GNKW+ YL LLQA+Y+EGDALDALGL RYCCRRML+ H+
Subjt:  MIIPVRCFTCGKVIGNKWDHYLDLLQADYSEGDALDALGLVRYCCRRMLMTHL

Q39290 DNA-directed RNA polymerases I, II, and III subunit RPABC5

9.2e-24

90.57

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Query:  MIIPVRCFTCGKVIGNKWDHYLDLLQADYSEGDALDALGLVRYCCRRMLMTHL
        MIIPVRCFTCGKVIGNKWD YLDLLQ DY+EGDALDAL LVRYCCRRMLMTH+
Subjt:  MIIPVRCFTCGKVIGNKWDHYLDLLQADYSEGDALDALGLVRYCCRRMLMTHL

Q55AB6 DNA-directed RNA polymerases I, II, and III subunit rpabc5

1.1e-21

84.91

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Query:  MIIPVRCFTCGKVIGNKWDHYLDLLQADYSEGDALDALGLVRYCCRRMLMTHL
        MIIPVRCFTCGKVIGNKWD YL LLQ DY+EGDALDAL L RYCCRRML+TH+
Subjt:  MIIPVRCFTCGKVIGNKWDHYLDLLQADYSEGDALDALGLVRYCCRRMLMTHL

Q8LFJ6 DNA-directed RNA polymerases II, IV and V subunit 10

9.2e-24

90.57

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Query:  MIIPVRCFTCGKVIGNKWDHYLDLLQADYSEGDALDALGLVRYCCRRMLMTHL
        MIIPVRCFTCGKVIGNKWD YLDLLQ DY+EGDALDAL LVRYCCRRMLMTH+
Subjt:  MIIPVRCFTCGKVIGNKWDHYLDLLQADYSEGDALDALGLVRYCCRRMLMTHL

Q9SYA6 DNA-directed RNA polymerase subunit 10-like protein

1.9e-24

90.57

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Query:  MIIPVRCFTCGKVIGNKWDHYLDLLQADYSEGDALDALGLVRYCCRRMLMTHL
        MI+PVRCFTCGKVIGNKWD YL+LLQADY+EGDALDALGLVRYCCRRMLMTH+
Subjt:  MIIPVRCFTCGKVIGNKWDHYLDLLQADYSEGDALDALGLVRYCCRRMLMTHL

Arabidopsis top hits

e value

%identity

Alignment

AT1G11475.1 RNA polymerases N / 8 kDa subunit

6.5e-25

90.57

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Query:  MIIPVRCFTCGKVIGNKWDHYLDLLQADYSEGDALDALGLVRYCCRRMLMTHL
        MIIPVRCFTCGKVIGNKWD YLDLLQ DY+EGDALDAL LVRYCCRRMLMTH+
Subjt:  MIIPVRCFTCGKVIGNKWDHYLDLLQADYSEGDALDALGLVRYCCRRMLMTHL

AT1G61700.1 RNA polymerases N / 8 kDa subunit

1.3e-25

90.57

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Query:  MIIPVRCFTCGKVIGNKWDHYLDLLQADYSEGDALDALGLVRYCCRRMLMTHL
        MI+PVRCFTCGKVIGNKWD YL+LLQADY+EGDALDALGLVRYCCRRMLMTH+
Subjt:  MIIPVRCFTCGKVIGNKWDHYLDLLQADYSEGDALDALGLVRYCCRRMLMTHL

Sequences

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CDS sequence

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ATGATCATCCCAGTCCGTTGCTTCACTTGCGGGAAGGTGATTGGAAACAAATGGGATCATTATCTTGATCTTCTACAGGCAGACTATTCTGAAGGAGATGCACTTGATGC
ACTGGGCTTGGTTCGCTACTGCTGTAGGCGAATGCTCATGACTCATCTTTGGATAAGTCTGATACCAGTTAGGGCGGGGGGACAAGTTTTCTGCTTGTTCATGTGCAGCA
GTCAGTATTGGCGTTTTATGGTGTCTGGGTCCAGTTAA

mRNA sequence

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Protein sequence

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MIIPVRCFTCGKVIGNKWDHYLDLLQADYSEGDALDALGLVRYCCRRMLMTHLWISLIPVRAGGQVFCLFMCSSQYWRFMVSGSS

Sgr023185 (gene) of Monk fruit (Qingpiguo) v1 genome