CuGenDBv2

Gene ID	Sgr023613
Organism	Siraitia grosvenorii cv. Qingpiguo (Monk fruit (Qingpiguo) v1)
Description	Pre-mRNA splicing factor
Genome location	tig00000892:5009206..5009534
RNA-Seq Expression	Sgr023613
Synteny	Sgr023613
Gene Ontology terms	GO:0000244 - spliceosomal tri-snRNP complex assembly (biological process) GO:0009409 - response to cold (biological process) GO:0009845 - seed germination (biological process) GO:0080188 - RNA-directed DNA methylation (biological process) GO:2000630 - positive regulation of miRNA metabolic process (biological process) GO:2000636 - positive regulation of primary miRNA processing (biological process) GO:0015030 - Cajal body (cellular component) GO:0046540 - U4/U6 x U5 tri-snRNP complex (cellular component) GO:0071013 - catalytic step 2 spliceosome (cellular component) GO:0005515 - protein binding (molecular function)
InterPro domains	IPR003107 - HAT (Half-A-TPR) repeat IPR011990 - Tetratricopeptide-like helical domain superfamily IPR027108 - Pre-mRNA-processing factor 6/Prp1/STA1 IPR045075 - Pre-mRNA-splicing factor Syf1-like

Homology

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GenBank top hits

e value

%identity

Alignment

ADN34237.1 pre-mRNA splicing factor, partial [Cucumis melo subsp. melo]

6.6e-36

81.55

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Query:  MKSAIVERELGNAEEESRLLNEGL--------------NLEERLGHLEKAKEAYESGLRHCPSCIPLWLSLAHLEEKMNGLSKARAVLTMARKKNPQNPE
        MKSAIVERELGNAEEES+LL+EGL               LEERL HLEKAKEAYESGL+HCPSCIPLWLSLAHLEEKMNGLSKARAVLTMARKKNPQNPE
Subjt:  MKSAIVERELGNAEEESRLLNEGL--------------NLEERLGHLEKAKEAYESGLRHCPSCIPLWLSLAHLEEKMNGLSKARAVLTMARKKNPQNPE

Query:  LWL
        LWL
Subjt:  LWL

XP_008459779.1 PREDICTED: protein STABILIZED1 [Cucumis melo]

6.6e-36

81.55

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Query:  MKSAIVERELGNAEEESRLLNEGL--------------NLEERLGHLEKAKEAYESGLRHCPSCIPLWLSLAHLEEKMNGLSKARAVLTMARKKNPQNPE
        MKSAIVERELGNAEEES+LL+EGL               LEERL HLEKAKEAYESGL+HCPSCIPLWLSLAHLEEKMNGLSKARAVLTMARKKNPQNPE
Subjt:  MKSAIVERELGNAEEESRLLNEGL--------------NLEERLGHLEKAKEAYESGLRHCPSCIPLWLSLAHLEEKMNGLSKARAVLTMARKKNPQNPE

Query:  LWL
        LWL
Subjt:  LWL

XP_022947634.1 protein STABILIZED1 [Cucurbita moschata]

9.2e-38

84.47

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Query:  MKSAIVERELGNAEEESRLLNEGL--------------NLEERLGHLEKAKEAYESGLRHCPSCIPLWLSLAHLEEKMNGLSKARAVLTMARKKNPQNPE
        MKSAIVERELGNAEEESRLLNEGL               LEERLGHLEKAKEAYESGL+HCPSCIPLWLSLAHLEEKMNGLSKARAVLTMARKKNPQNPE
Subjt:  MKSAIVERELGNAEEESRLLNEGL--------------NLEERLGHLEKAKEAYESGLRHCPSCIPLWLSLAHLEEKMNGLSKARAVLTMARKKNPQNPE

Query:  LWL
        LWL
Subjt:  LWL

XP_022970703.1 protein STABILIZED1 [Cucurbita maxima]

9.2e-38

84.47

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Query:  MKSAIVERELGNAEEESRLLNEGL--------------NLEERLGHLEKAKEAYESGLRHCPSCIPLWLSLAHLEEKMNGLSKARAVLTMARKKNPQNPE
        MKSAIVERELGNAEEESRLLNEGL               LEERLGHLEKAKEAYESGL+HCPSCIPLWLSLAHLEEKMNGLSKARAVLTMARKKNPQNPE
Subjt:  MKSAIVERELGNAEEESRLLNEGL--------------NLEERLGHLEKAKEAYESGLRHCPSCIPLWLSLAHLEEKMNGLSKARAVLTMARKKNPQNPE

Query:  LWL
        LWL
Subjt:  LWL

XP_023532967.1 protein STABILIZED1 [Cucurbita pepo subsp. pepo]

9.2e-38

84.47

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Query:  MKSAIVERELGNAEEESRLLNEGL--------------NLEERLGHLEKAKEAYESGLRHCPSCIPLWLSLAHLEEKMNGLSKARAVLTMARKKNPQNPE
        MKSAIVERELGNAEEESRLLNEGL               LEERLGHLEKAKEAYESGL+HCPSCIPLWLSLAHLEEKMNGLSKARAVLTMARKKNPQNPE
Subjt:  MKSAIVERELGNAEEESRLLNEGL--------------NLEERLGHLEKAKEAYESGLRHCPSCIPLWLSLAHLEEKMNGLSKARAVLTMARKKNPQNPE

Query:  LWL
        LWL
Subjt:  LWL

TrEMBL top hits

e value

%identity

Alignment

A0A1S3CAH3 protein STABILIZED1

3.2e-36

81.55

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Query:  MKSAIVERELGNAEEESRLLNEGL--------------NLEERLGHLEKAKEAYESGLRHCPSCIPLWLSLAHLEEKMNGLSKARAVLTMARKKNPQNPE
        MKSAIVERELGNAEEES+LL+EGL               LEERL HLEKAKEAYESGL+HCPSCIPLWLSLAHLEEKMNGLSKARAVLTMARKKNPQNPE
Subjt:  MKSAIVERELGNAEEESRLLNEGL--------------NLEERLGHLEKAKEAYESGLRHCPSCIPLWLSLAHLEEKMNGLSKARAVLTMARKKNPQNPE

Query:  LWL
        LWL
Subjt:  LWL

A0A5A7TA27 Protein STABILIZED1

3.2e-36

81.55

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Query:  MKSAIVERELGNAEEESRLLNEGL--------------NLEERLGHLEKAKEAYESGLRHCPSCIPLWLSLAHLEEKMNGLSKARAVLTMARKKNPQNPE
        MKSAIVERELGNAEEES+LL+EGL               LEERL HLEKAKEAYESGL+HCPSCIPLWLSLAHLEEKMNGLSKARAVLTMARKKNPQNPE
Subjt:  MKSAIVERELGNAEEESRLLNEGL--------------NLEERLGHLEKAKEAYESGLRHCPSCIPLWLSLAHLEEKMNGLSKARAVLTMARKKNPQNPE

Query:  LWL
        LWL
Subjt:  LWL

A0A6J1G7D8 protein STABILIZED1

4.5e-38

84.47

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Query:  MKSAIVERELGNAEEESRLLNEGL--------------NLEERLGHLEKAKEAYESGLRHCPSCIPLWLSLAHLEEKMNGLSKARAVLTMARKKNPQNPE
        MKSAIVERELGNAEEESRLLNEGL               LEERLGHLEKAKEAYESGL+HCPSCIPLWLSLAHLEEKMNGLSKARAVLTMARKKNPQNPE
Subjt:  MKSAIVERELGNAEEESRLLNEGL--------------NLEERLGHLEKAKEAYESGLRHCPSCIPLWLSLAHLEEKMNGLSKARAVLTMARKKNPQNPE

Query:  LWL
        LWL
Subjt:  LWL

A0A6J1I4P8 protein STABILIZED1

4.5e-38

84.47

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Query:  MKSAIVERELGNAEEESRLLNEGL--------------NLEERLGHLEKAKEAYESGLRHCPSCIPLWLSLAHLEEKMNGLSKARAVLTMARKKNPQNPE
        MKSAIVERELGNAEEESRLLNEGL               LEERLGHLEKAKEAYESGL+HCPSCIPLWLSLAHLEEKMNGLSKARAVLTMARKKNPQNPE
Subjt:  MKSAIVERELGNAEEESRLLNEGL--------------NLEERLGHLEKAKEAYESGLRHCPSCIPLWLSLAHLEEKMNGLSKARAVLTMARKKNPQNPE

Query:  LWL
        LWL
Subjt:  LWL

E5GCN8 Pre-mRNA splicing factor (Fragment)

3.2e-36

81.55

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Query:  MKSAIVERELGNAEEESRLLNEGL--------------NLEERLGHLEKAKEAYESGLRHCPSCIPLWLSLAHLEEKMNGLSKARAVLTMARKKNPQNPE
        MKSAIVERELGNAEEES+LL+EGL               LEERL HLEKAKEAYESGL+HCPSCIPLWLSLAHLEEKMNGLSKARAVLTMARKKNPQNPE
Subjt:  MKSAIVERELGNAEEESRLLNEGL--------------NLEERLGHLEKAKEAYESGLRHCPSCIPLWLSLAHLEEKMNGLSKARAVLTMARKKNPQNPE

Query:  LWL
        LWL
Subjt:  LWL

SwissProt top hits

e value

%identity

Alignment

A1A5S1 Pre-mRNA-processing factor 6

9.6e-14

42.72

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Query:  MKSAIVERELGNAEEESRLLNEGL--------------NLEERLGHLEKAKEAYESGLRHCPSCIPLWLSLAHLEEKMNGLSKARAVLTMARKKNPQNPE
        MKS  +E  LGN      L  E L               +EE+   +E+A+EAY  GL+ CP   PLWL L+ LEEK+  L++ARA+L  +R KNP+NP 
Subjt:  MKSAIVERELGNAEEESRLLNEGL--------------NLEERLGHLEKAKEAYESGLRHCPSCIPLWLSLAHLEEKMNGLSKARAVLTMARKKNPQNPE

Query:  LWL
        LWL
Subjt:  LWL

O94906 Pre-mRNA-processing factor 6

1.6e-13

45.88

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Query:  IVERELGNAEEESRLLNEGLNLEERLGHLEKAKEAYESGLRHCPSCIPLWLSLAHLEEKMNGLSKARAVLTMARKKNPQNPELWL
        + E  L + E+  +L      +EE+   +EKA+EAY  GL+ CP   PLWL L+ LEEK+  L++ARA+L  +R KNP+NP LWL
Subjt:  IVERELGNAEEESRLLNEGLNLEERLGHLEKAKEAYESGLRHCPSCIPLWLSLAHLEEKMNGLSKARAVLTMARKKNPQNPELWL

Q2KJJ0 Pre-mRNA-processing factor 6

5.7e-14

43.69

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Query:  MKSAIVERELGNAEEESRLLNEGL--------------NLEERLGHLEKAKEAYESGLRHCPSCIPLWLSLAHLEEKMNGLSKARAVLTMARKKNPQNPE
        MKS  +E  LGN      L  E L               +EE+   +EKA+EAY  GL+ CP   PLWL L+ LEEK+  L++ARA+L  +R KNP+NP 
Subjt:  MKSAIVERELGNAEEESRLLNEGL--------------NLEERLGHLEKAKEAYESGLRHCPSCIPLWLSLAHLEEKMNGLSKARAVLTMARKKNPQNPE

Query:  LWL
        LWL
Subjt:  LWL

Q91YR7 Pre-mRNA-processing factor 6

3.3e-14

43.69

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Query:  MKSAIVERELGNAEEESRLLNEGL--------------NLEERLGHLEKAKEAYESGLRHCPSCIPLWLSLAHLEEKMNGLSKARAVLTMARKKNPQNPE
        MKS  +E  LGN      L  E L               +EE+   +EKA+EAY  GL+ CP   PLWL L+ LEEK+  L++ARA+L  +R KNP+NP 
Subjt:  MKSAIVERELGNAEEESRLLNEGL--------------NLEERLGHLEKAKEAYESGLRHCPSCIPLWLSLAHLEEKMNGLSKARAVLTMARKKNPQNPE

Query:  LWL
        LWL
Subjt:  LWL

Q9ZT71 Protein STABILIZED1

1.5e-30

66.99

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Query:  MKSAIVERELGNAEEESRLLNEGL--------------NLEERLGHLEKAKEAYESGLRHCPSCIPLWLSLAHLEEKMNGLSKARAVLTMARKKNPQNPE
        MKSAIVERELGN EEE RLLNEGL               LEER  HLE+A++AY++GL+HCP CIPLWLSLA LEEK+NGL+KARA+LT ARKKNP   E
Subjt:  MKSAIVERELGNAEEESRLLNEGL--------------NLEERLGHLEKAKEAYESGLRHCPSCIPLWLSLAHLEEKMNGLSKARAVLTMARKKNPQNPE

Query:  LWL
        LWL
Subjt:  LWL

Arabidopsis top hits

e value

%identity

Alignment

AT4G03430.1 pre-mRNA splicing factor-related

1.1e-31

66.99

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Query:  MKSAIVERELGNAEEESRLLNEGL--------------NLEERLGHLEKAKEAYESGLRHCPSCIPLWLSLAHLEEKMNGLSKARAVLTMARKKNPQNPE
        MKSAIVERELGN EEE RLLNEGL               LEER  HLE+A++AY++GL+HCP CIPLWLSLA LEEK+NGL+KARA+LT ARKKNP   E
Subjt:  MKSAIVERELGNAEEESRLLNEGL--------------NLEERLGHLEKAKEAYESGLRHCPSCIPLWLSLAHLEEKMNGLSKARAVLTMARKKNPQNPE

Query:  LWL
        LWL
Subjt:  LWL

Sequences

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CDS sequence

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ATGAAATCTGCTATTGTTGAAAGAGAGCTAGGCAACGCTGAAGAAGAGAGCAGGTTACTGAATGAAGGGCTTAACTTAGAGGAACGTCTTGGACACCTGGAGAAGGCCAA
GGAAGCTTATGAGTCTGGTTTAAGGCACTGTCCTAGCTGCATACCACTTTGGCTTTCTCTTGCGCACCTGGAAGAGAAAATGAACGGATTGAGCAAAGCTCGAGCAGTCT
TGACTATGGCCAGAAAGAAGAATCCTCAAAACCCTGAACTTTGGCTGCTGCAGTGCGAGCTGAATTGA

mRNA sequence

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Protein sequence

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MKSAIVERELGNAEEESRLLNEGLNLEERLGHLEKAKEAYESGLRHCPSCIPLWLSLAHLEEKMNGLSKARAVLTMARKKNPQNPELWLLQCELN

Sgr023613 (gene) of Monk fruit (Qingpiguo) v1 genome