CuGenDBv2

Gene ID	Sgr024724
Organism	Siraitia grosvenorii cv. Qingpiguo (Monk fruit (Qingpiguo) v1)
Description	protein RDM1
Genome location	tig00002486:2242735..2247487
RNA-Seq Expression	Sgr024724
Synteny	Sgr024724
Gene Ontology terms	GO:0044030 - regulation of DNA methylation (biological process) GO:0000419 - RNA polymerase V complex (cellular component)
InterPro domains	IPR015270 - Protein RDM1, plant IPR036319 - RDM1 superfamily

Homology

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GenBank top hits

e value

%identity

Alignment

KAG6582316.1 Protein RDM1, partial [Cucurbita argyrosperma subsp. sororia]

7.8e-87

91.57

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Query:  LLSALKYILYNMKRPMPWNEQVDVISSGESSSSDSEIGVQNDGFEFKPSMDDFKINIPAKEMTSEGMLIKRAEMYQEYMKQIPIPAQRGSVIPFTTWMGL
        + S   YI+  MKRPMPWNEQVDVISSGESSSSDSE GVQNDGFEFKPSMDDFK  IPAKEMT+EGMLIKRAEMYQEYMKQI IPAQRGSVIPFTTWMGL
Subjt:  LLSALKYILYNMKRPMPWNEQVDVISSGESSSSDSEIGVQNDGFEFKPSMDDFKINIPAKEMTSEGMLIKRAEMYQEYMKQIPIPAQRGSVIPFTTWMGL

Query:  GKSIKQLYGQPLHYLTNILLKQWDQLRFGSADEYKPLDTVIHPSKAEATVWLVEEIHRRTSSHHHVAKLWLSDPMHHA
        GKSIKQLYGQPLHYLTNILLKQWDQLRFGS DEYKPLDTVIHPSKAEATVWLVEEIHRRTSSHHHVAKLWLSDPMH A
Subjt:  GKSIKQLYGQPLHYLTNILLKQWDQLRFGSADEYKPLDTVIHPSKAEATVWLVEEIHRRTSSHHHVAKLWLSDPMHHA

XP_022955802.1 protein RDM1 [Cucurbita moschata]

1.9e-85

95.81

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Query:  MKRPMPWNEQVDVISSGESSSSDSEIGVQNDGFEFKPSMDDFKINIPAKEMTSEGMLIKRAEMYQEYMKQIPIPAQRGSVIPFTTWMGLGKSIKQLYGQP
        MKRPMPWNEQVDVISSGESSSSDSE GVQNDGFEFKPSMDDFK  IPAKEMT+EGMLIKRAEMYQEYMKQI IPAQRGSVIPFTTWMGLGKSIKQLYGQP
Subjt:  MKRPMPWNEQVDVISSGESSSSDSEIGVQNDGFEFKPSMDDFKINIPAKEMTSEGMLIKRAEMYQEYMKQIPIPAQRGSVIPFTTWMGLGKSIKQLYGQP

Query:  LHYLTNILLKQWDQLRFGSADEYKPLDTVIHPSKAEATVWLVEEIHRRTSSHHHVAKLWLSDPMHHA
        LHYLTNILLKQWDQLRFGS DEYKPLDTVIHPSKAEATVWLVEEIHRRTSSHHHVAKLWLSDPMH A
Subjt:  LHYLTNILLKQWDQLRFGSADEYKPLDTVIHPSKAEATVWLVEEIHRRTSSHHHVAKLWLSDPMHHA

XP_022979547.1 protein RDM1-like [Cucurbita maxima]

4.3e-85

95.21

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Query:  MKRPMPWNEQVDVISSGESSSSDSEIGVQNDGFEFKPSMDDFKINIPAKEMTSEGMLIKRAEMYQEYMKQIPIPAQRGSVIPFTTWMGLGKSIKQLYGQP
        MKRPMPWNEQVDVISSGESSSSDSE GVQNDGFEFKPS+DDFK  IPAKEMT+EGMLIKRAEMYQEYMKQI IPAQRGSVIPFTTWMGLGKSIKQLYGQP
Subjt:  MKRPMPWNEQVDVISSGESSSSDSEIGVQNDGFEFKPSMDDFKINIPAKEMTSEGMLIKRAEMYQEYMKQIPIPAQRGSVIPFTTWMGLGKSIKQLYGQP

Query:  LHYLTNILLKQWDQLRFGSADEYKPLDTVIHPSKAEATVWLVEEIHRRTSSHHHVAKLWLSDPMHHA
        LHYLTNILLKQWDQLRFGS DEYKPLDTVIHPSKAEATVWLVEEIHRRTSSHHHVAKLWLSDPMH A
Subjt:  LHYLTNILLKQWDQLRFGSADEYKPLDTVIHPSKAEATVWLVEEIHRRTSSHHHVAKLWLSDPMHHA

XP_023527197.1 protein RDM1 [Cucurbita pepo subsp. pepo]

2.8e-84

94.61

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Query:  MKRPMPWNEQVDVISSGESSSSDSEIGVQNDGFEFKPSMDDFKINIPAKEMTSEGMLIKRAEMYQEYMKQIPIPAQRGSVIPFTTWMGLGKSIKQLYGQP
        MKRPMPWNEQVDVISSGESSSSDSE GVQNDGFEFKPS+DDFK  IPAKEMT+EG LIKRAEMYQEYMKQI IPAQRGSVIPFTTWMGLGKSIKQLYGQP
Subjt:  MKRPMPWNEQVDVISSGESSSSDSEIGVQNDGFEFKPSMDDFKINIPAKEMTSEGMLIKRAEMYQEYMKQIPIPAQRGSVIPFTTWMGLGKSIKQLYGQP

Query:  LHYLTNILLKQWDQLRFGSADEYKPLDTVIHPSKAEATVWLVEEIHRRTSSHHHVAKLWLSDPMHHA
        LHYLTNILLKQWDQLRFGS DEYKPLDTVIHPSKAEATVWLVEEIHRRTSSHHHVAKLWLSDPMH A
Subjt:  LHYLTNILLKQWDQLRFGSADEYKPLDTVIHPSKAEATVWLVEEIHRRTSSHHHVAKLWLSDPMHHA

XP_038877941.1 protein RDM1 [Benincasa hispida]

1.9e-85

95.81

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Query:  MKRPMPWNEQVDVISSGESSSSDSEIGVQNDGFEFKPSMDDFKINIPAKEMTSEGMLIKRAEMYQEYMKQIPIPAQRGSVIPFTTWMGLGKSIKQLYGQP
        MKRPMPWNEQVDVISSGESSSSDSE GVQNDGFEFKPS+DDFK  IPAKEMTSEGMLIKRAEMYQEYMKQI IPAQRGSVIPFTTWMGLGKSIKQLYGQP
Subjt:  MKRPMPWNEQVDVISSGESSSSDSEIGVQNDGFEFKPSMDDFKINIPAKEMTSEGMLIKRAEMYQEYMKQIPIPAQRGSVIPFTTWMGLGKSIKQLYGQP

Query:  LHYLTNILLKQWDQLRFGSADEYKPLDTVIHPSKAEATVWLVEEIHRRTSSHHHVAKLWLSDPMHHA
        LHYLTNILLKQWDQLRFGS DEYKPLDTVIHPSKAEATVWLVEEIHRRTSSHHHVAKLWLSDPMH A
Subjt:  LHYLTNILLKQWDQLRFGSADEYKPLDTVIHPSKAEATVWLVEEIHRRTSSHHHVAKLWLSDPMHHA

TrEMBL top hits

e value

%identity

Alignment

A0A0A0L8M0 Uncharacterized protein

6.6e-84

92.81

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Query:  MKRPMPWNEQVDVISSGESSSSDSEIGVQNDGFEFKPSMDDFKINIPAKEMTSEGMLIKRAEMYQEYMKQIPIPAQRGSVIPFTTWMGLGKSIKQLYGQP
        MKRPMPWNEQVD+ISSGESSSSDSE  +QNDG+EFKPS+DDFK  IPAKEMTSEGML+KRAEMYQEYMKQI IPAQRGSVIPFTTWMGLGKSIKQLYGQP
Subjt:  MKRPMPWNEQVDVISSGESSSSDSEIGVQNDGFEFKPSMDDFKINIPAKEMTSEGMLIKRAEMYQEYMKQIPIPAQRGSVIPFTTWMGLGKSIKQLYGQP

Query:  LHYLTNILLKQWDQLRFGSADEYKPLDTVIHPSKAEATVWLVEEIHRRTSSHHHVAKLWLSDPMHHA
        LHYLTNILLKQWDQLR GSADEYKPLDTVIHPSKAEATVWLVEEIHRRTSSHHHVAKLWLSDPMH A
Subjt:  LHYLTNILLKQWDQLRFGSADEYKPLDTVIHPSKAEATVWLVEEIHRRTSSHHHVAKLWLSDPMHHA

A0A1S3AWI8 protein RDM1

3.9e-84

94.01

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Query:  MKRPMPWNEQVDVISSGESSSSDSEIGVQNDGFEFKPSMDDFKINIPAKEMTSEGMLIKRAEMYQEYMKQIPIPAQRGSVIPFTTWMGLGKSIKQLYGQP
        MKRPMPWNEQVDVISSGESSSSDSE  VQNDG+EFKPS+DDFK  IPAKEMTSEGML+KRAEMYQEYMKQI IPAQRGSVIPFTTWMGLGKSIKQLYGQP
Subjt:  MKRPMPWNEQVDVISSGESSSSDSEIGVQNDGFEFKPSMDDFKINIPAKEMTSEGMLIKRAEMYQEYMKQIPIPAQRGSVIPFTTWMGLGKSIKQLYGQP

Query:  LHYLTNILLKQWDQLRFGSADEYKPLDTVIHPSKAEATVWLVEEIHRRTSSHHHVAKLWLSDPMHHA
        LHYLTNILLKQWDQLR GSADEYKPLDTVIHPSKAEATVWLVEEIHRRTSSHHHVAKLWLSDPMH A
Subjt:  LHYLTNILLKQWDQLRFGSADEYKPLDTVIHPSKAEATVWLVEEIHRRTSSHHHVAKLWLSDPMHHA

A0A5D3D0B3 Protein RDM1

6.6e-84

93.41

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Query:  MKRPMPWNEQVDVISSGESSSSDSEIGVQNDGFEFKPSMDDFKINIPAKEMTSEGMLIKRAEMYQEYMKQIPIPAQRGSVIPFTTWMGLGKSIKQLYGQP
        MKRPMPWNEQVDVISSGESSSSDSE  VQNDG+EFKPS+DDFK  IPAKEMTSEGML+KRAEMYQEYMKQI IPAQRGSVIPFTTWMGLGKSIKQLYGQP
Subjt:  MKRPMPWNEQVDVISSGESSSSDSEIGVQNDGFEFKPSMDDFKINIPAKEMTSEGMLIKRAEMYQEYMKQIPIPAQRGSVIPFTTWMGLGKSIKQLYGQP

Query:  LHYLTNILLKQWDQLRFGSADEYKPLDTVIHPSKAEATVWLVEEIHRRTSSHHHVAKLWLSDPMHHA
        LHY+TNILLKQWDQLR GSADEYKPLDTVIHPSKAEATVWLVEEIHRRTSSHHHVAKLWLSDPMH A
Subjt:  LHYLTNILLKQWDQLRFGSADEYKPLDTVIHPSKAEATVWLVEEIHRRTSSHHHVAKLWLSDPMHHA

A0A6J1GV10 protein RDM1

9.3e-86

95.81

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Query:  MKRPMPWNEQVDVISSGESSSSDSEIGVQNDGFEFKPSMDDFKINIPAKEMTSEGMLIKRAEMYQEYMKQIPIPAQRGSVIPFTTWMGLGKSIKQLYGQP
        MKRPMPWNEQVDVISSGESSSSDSE GVQNDGFEFKPSMDDFK  IPAKEMT+EGMLIKRAEMYQEYMKQI IPAQRGSVIPFTTWMGLGKSIKQLYGQP
Subjt:  MKRPMPWNEQVDVISSGESSSSDSEIGVQNDGFEFKPSMDDFKINIPAKEMTSEGMLIKRAEMYQEYMKQIPIPAQRGSVIPFTTWMGLGKSIKQLYGQP

Query:  LHYLTNILLKQWDQLRFGSADEYKPLDTVIHPSKAEATVWLVEEIHRRTSSHHHVAKLWLSDPMHHA
        LHYLTNILLKQWDQLRFGS DEYKPLDTVIHPSKAEATVWLVEEIHRRTSSHHHVAKLWLSDPMH A
Subjt:  LHYLTNILLKQWDQLRFGSADEYKPLDTVIHPSKAEATVWLVEEIHRRTSSHHHVAKLWLSDPMHHA

A0A6J1INZ9 protein RDM1-like

2.1e-85

95.21

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Query:  MKRPMPWNEQVDVISSGESSSSDSEIGVQNDGFEFKPSMDDFKINIPAKEMTSEGMLIKRAEMYQEYMKQIPIPAQRGSVIPFTTWMGLGKSIKQLYGQP
        MKRPMPWNEQVDVISSGESSSSDSE GVQNDGFEFKPS+DDFK  IPAKEMT+EGMLIKRAEMYQEYMKQI IPAQRGSVIPFTTWMGLGKSIKQLYGQP
Subjt:  MKRPMPWNEQVDVISSGESSSSDSEIGVQNDGFEFKPSMDDFKINIPAKEMTSEGMLIKRAEMYQEYMKQIPIPAQRGSVIPFTTWMGLGKSIKQLYGQP

Query:  LHYLTNILLKQWDQLRFGSADEYKPLDTVIHPSKAEATVWLVEEIHRRTSSHHHVAKLWLSDPMHHA
        LHYLTNILLKQWDQLRFGS DEYKPLDTVIHPSKAEATVWLVEEIHRRTSSHHHVAKLWLSDPMH A
Subjt:  LHYLTNILLKQWDQLRFGSADEYKPLDTVIHPSKAEATVWLVEEIHRRTSSHHHVAKLWLSDPMHHA

SwissProt top hits

e value

%identity

Alignment

Q9LUJ3 Protein RDM1

4.1e-46

57.89

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Query:  SGESSSSDSEIGVQNDGFEFKPSMDDFKINIPAKEMTSEGMLIKRAEMYQEYMKQIPIPAQRGSVIPFTTWMGLGKSIKQLYGQPLHYLTNILLKQWDQL
        SG+S SSD +  + +DGF          ++   +++  EG L++RAEMYQ+YMKQ+PIP  RGS+IPFT+W+GL  S+KQLYGQPLHYLTN+LL++WDQ 
Subjt:  SGESSSSDSEIGVQNDGFEFKPSMDDFKINIPAKEMTSEGMLIKRAEMYQEYMKQIPIPAQRGSVIPFTTWMGLGKSIKQLYGQPLHYLTNILLKQWDQL

Query:  RFGSADEYKPLDTVIHPSKAEATVWLVEEIHRRTSSHHHVAKLWLSDPMHHA
        RFG+  E + LD++IHP+KAEAT+WLVEEIHR T SH H+A LW SDPM+H+
Subjt:  RFGSADEYKPLDTVIHPSKAEATVWLVEEIHRRTSSHHHVAKLWLSDPMHHA

Arabidopsis top hits

e value

%identity

Alignment

AT3G22680.1 RNA-DIRECTED DNA METHYLATION 1

2.9e-47

57.89

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Query:  SGESSSSDSEIGVQNDGFEFKPSMDDFKINIPAKEMTSEGMLIKRAEMYQEYMKQIPIPAQRGSVIPFTTWMGLGKSIKQLYGQPLHYLTNILLKQWDQL
        SG+S SSD +  + +DGF          ++   +++  EG L++RAEMYQ+YMKQ+PIP  RGS+IPFT+W+GL  S+KQLYGQPLHYLTN+LL++WDQ 
Subjt:  SGESSSSDSEIGVQNDGFEFKPSMDDFKINIPAKEMTSEGMLIKRAEMYQEYMKQIPIPAQRGSVIPFTTWMGLGKSIKQLYGQPLHYLTNILLKQWDQL

Query:  RFGSADEYKPLDTVIHPSKAEATVWLVEEIHRRTSSHHHVAKLWLSDPMHHA
        RFG+  E + LD++IHP+KAEAT+WLVEEIHR T SH H+A LW SDPM+H+
Subjt:  RFGSADEYKPLDTVIHPSKAEATVWLVEEIHRRTSSHHHVAKLWLSDPMHHA

Sequences

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CDS sequence

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ATGTTCCTTGAAATGTTGAACCGGCCTTTTGAACCAAAGTCAAACATCTCCCATCGGGCAAAAGCAAAACCCACAATCTCAAAGCCGGTCTCTGTTGTGCTCTCTCAAAA
TTTGAGCTTGTTGGATTGCAGAACTTTACTGGGTATCCGTGGCGAAACTCTCATCAAGGAGAGCTTCAGCTTTACGATTCGACGCTCTCTCCCTCTCTTCCAAGTACCAA
GAATGTTGCTAAGAGCGATGAACATCCATCGTTTGCTGCAGTGTCGCACTAGAATCCCATTAGTACTCAGAAATTACCCTAGACAGCGATGGTTATTGAGTGCACTGAAG
TACATTCTTTACAATATGAAGAGGCCAATGCCGTGGAATGAACAAGTAGATGTCATATCATCGGGTGAATCCTCTTCTTCTGATTCAGAAATAGGAGTACAAAATGATGG
ATTTGAGTTCAAGCCTTCTATGGATGATTTCAAAATCAACATTCCTGCAAAAGAAATGACATCTGAAGGTATGTTGATTAAAAGGGCAGAAATGTATCAAGAATACATGA
AACAGATCCCAATCCCAGCACAACGTGGTTCTGTAATACCATTTACAACATGGATGGGATTAGGCAAATCTATAAAGCAGCTTTATGGTCAGCCTTTGCATTACCTGACT
AATATTCTACTAAAACAGTGGGATCAATTAAGGTTCGGAAGTGCGGATGAATATAAGCCATTGGATACCGTTATTCACCCGAGTAAAGCTGAAGCAACCGTATGGCTCGT
TGAAGAGATTCATAGGCGCACCTCATCCCATCATCATGTTGCTAAACTCTGGCTATCAGACCCAATGCACCATGCCCTCACATTGGCAACATCAGCCCACTTTCCAGCTG
AAGCATATATGTTTGATAGAAGCACAAGAATCCCAGTCCTTTCTGAAGCCACTTCTGCTAACCTTTTGGCTGCAAATGTCGCCATATCGACATTTTTATGGGTACGGCAT
GCAGCCAATAGAGATCCCCATATAATCCCATTGGCTCGTTCTCCATTCCCATCCACAGCCATTGCTCCAATGGCTGCTGTCCATGCAGAGACGTCTTTTCTATCCATATT
GTCGAACACTTCCATTGCACTACCTGAATCGCCGCACCTAGCAAACATATCAACTAATGCTGTCTCAAGAAGCAGATCACAGTCGATGTTATTCTTTGCAATATATGCAT
ATATCCACTTGGCGAGATCGAGAGCTCCGAGATATCCACACGCAGATGCAACTTCAACCATTGTCACCCTGTCTGCTTCTATTCCCTTTGTCCGCATCTCTCGAAAGACA
GTCTTAGCGCACGCACTCAACACGAACGGAAACGTGAAGTTGTCTGGCGGAAATCAGCTTCGCGACAGAAGATTGTTTACGAATGAGACCCTGCTTCGACACGTAACAGT
GCAATTGTCGAAGCTCATCCATGGTTTTGCAATTTCTGAACGACCCAACTTGAAAATGGTCGGGAGGGGTATGCTTAGAGTCATTCTGAGCGGTGGGTATGATGAAGTTC
GGCGTTGCCGAGACGGTAGGACATGGATGAAGATTTGCCGCCATTATGGCGTCAGTTGGGTGTTGTTGAATGCACGGTTACTACTCGAGCACTTTGAACTCAGCAGTCGA
TTGCGCCACAGGCCCAAGGGCTTTGAGATTGATCGCTCAAAGGAGCTCCCTTTTTTTTTTCTTTCCAATTTTATTTCAAATTTGTCCCCCAATACTTAA

mRNA sequence

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Protein sequence

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MFLEMLNRPFEPKSNISHRAKAKPTISKPVSVVLSQNLSLLDCRTLLGIRGETLIKESFSFTIRRSLPLFQVPRMLLRAMNIHRLLQCRTRIPLVLRNYPRQRWLLSALK
YILYNMKRPMPWNEQVDVISSGESSSSDSEIGVQNDGFEFKPSMDDFKINIPAKEMTSEGMLIKRAEMYQEYMKQIPIPAQRGSVIPFTTWMGLGKSIKQLYGQPLHYLT
NILLKQWDQLRFGSADEYKPLDTVIHPSKAEATVWLVEEIHRRTSSHHHVAKLWLSDPMHHALTLATSAHFPAEAYMFDRSTRIPVLSEATSANLLAANVAISTFLWVRH
AANRDPHIIPLARSPFPSTAIAPMAAVHAETSFLSILSNTSIALPESPHLANISTNAVSRSRSQSMLFFAIYAYIHLARSRAPRYPHADATSTIVTLSASIPFVRISRKT
VLAHALNTNGNVKLSGGNQLRDRRLFTNETLLRHVTVQLSKLIHGFAISERPNLKMVGRGMLRVILSGGYDEVRRCRDGRTWMKICRHYGVSWVLLNARLLLEHFELSSR
LRHRPKGFEIDRSKELPFFFLSNFISNLSPNT

Sgr024724 (gene) of Monk fruit (Qingpiguo) v1 genome