CuGenDBv2

Gene ID	Sgr025306
Organism	Siraitia grosvenorii cv. Qingpiguo (Monk fruit (Qingpiguo) v1)
Description	DNA-directed RNA polymerase I subunit rpa49
Genome location	tig00004836:1356453..1365283
RNA-Seq Expression	Sgr025306
Synteny	Sgr025306
Gene Ontology terms	GO:0001188 - RNA polymerase I preinitiation complex assembly (biological process) GO:0006362 - transcription elongation from RNA polymerase I promoter (biological process) GO:0042790 - nucleolar large rRNA transcription by RNA polymerase I (biological process) GO:0005736 - RNA polymerase I complex (cellular component) GO:0003677 - DNA binding (molecular function) GO:0003899 - DNA-directed 5'-3' RNA polymerase activity (molecular function)
InterPro domains	NA

Homology

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GenBank top hits

e value

%identity

Alignment

KAG7014005.1 DNA-directed RNA polymerase I subunit rpa49, partial [Cucurbita argyrosperma subsp. argyrosperma]

9.3e-50

71.17

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Query:  LTATAKKKKKSE-KKKRVPSVNAKIQVLSNHPEKTPPLVGYFPSGFDPYKDADEEAVQEQNSMRARVYRNKNKPNRMQLVVSPTGSNVDFVG--------
        L + AKKKKKSE KKKRVPSVNAKIQVLSNHP+KTPPLV YFPSGFDP+KD +EEAV+EQ+S+RARVYR+KNKPNRMQLVVSPTGSNVDFVG        
Subjt:  LTATAKKKKKSE-KKKRVPSVNAKIQVLSNHPEKTPPLVGYFPSGFDPYKDADEEAVQEQNSMRARVYRNKNKPNRMQLVVSPTGSNVDFVG--------

Query:  ----------------DQSLKIVPIASNMIFRLDPKVRGSDVSDKESPTVANDELSLQEKADK
                         QSLKIVPIASNMIFRLDP++RGSDVS+ ESP+V N+ELS+QEKA+K
Subjt:  ----------------DQSLKIVPIASNMIFRLDPKVRGSDVSDKESPTVANDELSLQEKADK

XP_022151610.1 DNA-directed RNA polymerase I subunit rpa49 [Momordica charantia]

4.9e-51

74.84

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Query:  AKKKKKSE-KKKRVPSVNAKIQVLSNHPEKTPPLVGYFPSGFDPYKDADEEAVQEQNSMRARVYRNKNKPNRMQLVVSPTGSNVDFVG------------
        AKK +KSE KKKRV SVNA IQVLSNHPEKTPPLVGYFPSGF+P+KDADEEAVQEQ S+RARVYRNKNKPNRMQLVVSPTGSNVDFVG            
Subjt:  AKKKKKSE-KKKRVPSVNAKIQVLSNHPEKTPPLVGYFPSGFDPYKDADEEAVQEQNSMRARVYRNKNKPNRMQLVVSPTGSNVDFVG------------

Query:  ------------DQSLKIVPIASNMIFRLDPKVRGSDVSDKESPTVANDELSLQEKADK
                     QSLKIVPIA+NMIFRLDPKVRGSDVS+KESPTV +DELS+QEKAD+
Subjt:  ------------DQSLKIVPIASNMIFRLDPKVRGSDVSDKESPTVANDELSLQEKADK

XP_022953835.1 DNA-directed RNA polymerase I subunit rpa49-like [Cucurbita moschata]

9.3e-50

71.17

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Query:  LTATAKKKKKSE-KKKRVPSVNAKIQVLSNHPEKTPPLVGYFPSGFDPYKDADEEAVQEQNSMRARVYRNKNKPNRMQLVVSPTGSNVDFVG--------
        L + AKKKKKSE KKKRVPSVNAKIQVLSNHP+KTPPLV YFPSGFDP+KD +EEAV+EQ+S+RARVYR+KNKPNRMQLVVSPTGSNVDFVG        
Subjt:  LTATAKKKKKSE-KKKRVPSVNAKIQVLSNHPEKTPPLVGYFPSGFDPYKDADEEAVQEQNSMRARVYRNKNKPNRMQLVVSPTGSNVDFVG--------

Query:  ----------------DQSLKIVPIASNMIFRLDPKVRGSDVSDKESPTVANDELSLQEKADK
                         QSLKIVPIASNMIFRLDP++RGSDVS+ ESP+V N+ELS+QEKA+K
Subjt:  ----------------DQSLKIVPIASNMIFRLDPKVRGSDVSDKESPTVANDELSLQEKADK

XP_022992259.1 DNA-directed RNA polymerase I subunit rpa49-like [Cucurbita maxima]

4.6e-49

72.33

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Query:  AKKKKKSE-KKKRVPSVNAKIQVLSNHPEKTPPLVGYFPSGFDPYKDADEEAVQEQNSMRARVYRNKNKPNRMQLVVSPTGSNVDFVG------------
        AKKKKKSE KKKRVPSVNAKIQVLSNHP+KTPPLV YFPSGFDP+KDA+EEAV+EQ+S+RARVYR+KNKPNRMQLVVSPTGSNVDFVG            
Subjt:  AKKKKKSE-KKKRVPSVNAKIQVLSNHPEKTPPLVGYFPSGFDPYKDADEEAVQEQNSMRARVYRNKNKPNRMQLVVSPTGSNVDFVG------------

Query:  ------------DQSLKIVPIASNMIFRLDPKVRGSDVSDKESPTVANDELSLQEKADK
                     QSLKIVPIASNMIFRLDP++RGSDVS+ ES +V N+ELS+QEKA+K
Subjt:  ------------DQSLKIVPIASNMIFRLDPKVRGSDVSDKESPTVANDELSLQEKADK

XP_023547949.1 DNA-directed RNA polymerase I subunit rpa49-like [Cucurbita pepo subsp. pepo]

9.3e-50

71.17

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Query:  LTATAKKKKKSE-KKKRVPSVNAKIQVLSNHPEKTPPLVGYFPSGFDPYKDADEEAVQEQNSMRARVYRNKNKPNRMQLVVSPTGSNVDFVG--------
        L + AKKKKKSE KKKRVPSVNAKIQVLSNHP+KTPPLV YFPSGFDP+KD +EEAV+EQ+S+RARVYR+KNKPNRMQLVVSPTGSNVDFVG        
Subjt:  LTATAKKKKKSE-KKKRVPSVNAKIQVLSNHPEKTPPLVGYFPSGFDPYKDADEEAVQEQNSMRARVYRNKNKPNRMQLVVSPTGSNVDFVG--------

Query:  ----------------DQSLKIVPIASNMIFRLDPKVRGSDVSDKESPTVANDELSLQEKADK
                         QSLKIVPIASNMIFRLDP++RGSDVS+ ESP+V N+ELS+QEKA+K
Subjt:  ----------------DQSLKIVPIASNMIFRLDPKVRGSDVSDKESPTVANDELSLQEKADK

TrEMBL top hits

e value

%identity

Alignment

A0A6J1DBN9 DNA-directed RNA polymerase I subunit rpa49

2.4e-51

74.84

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Query:  AKKKKKSE-KKKRVPSVNAKIQVLSNHPEKTPPLVGYFPSGFDPYKDADEEAVQEQNSMRARVYRNKNKPNRMQLVVSPTGSNVDFVG------------
        AKK +KSE KKKRV SVNA IQVLSNHPEKTPPLVGYFPSGF+P+KDADEEAVQEQ S+RARVYRNKNKPNRMQLVVSPTGSNVDFVG            
Subjt:  AKKKKKSE-KKKRVPSVNAKIQVLSNHPEKTPPLVGYFPSGFDPYKDADEEAVQEQNSMRARVYRNKNKPNRMQLVVSPTGSNVDFVG------------

Query:  ------------DQSLKIVPIASNMIFRLDPKVRGSDVSDKESPTVANDELSLQEKADK
                     QSLKIVPIA+NMIFRLDPKVRGSDVS+KESPTV +DELS+QEKAD+
Subjt:  ------------DQSLKIVPIASNMIFRLDPKVRGSDVSDKESPTVANDELSLQEKADK

A0A6J1GQS4 DNA-directed RNA polymerase I subunit rpa49-like

4.5e-50

71.17

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Query:  LTATAKKKKKSE-KKKRVPSVNAKIQVLSNHPEKTPPLVGYFPSGFDPYKDADEEAVQEQNSMRARVYRNKNKPNRMQLVVSPTGSNVDFVG--------
        L + AKKKKKSE KKKRVPSVNAKIQVLSNHP+KTPPLV YFPSGFDP+KD +EEAV+EQ+S+RARVYR+KNKPNRMQLVVSPTGSNVDFVG        
Subjt:  LTATAKKKKKSE-KKKRVPSVNAKIQVLSNHPEKTPPLVGYFPSGFDPYKDADEEAVQEQNSMRARVYRNKNKPNRMQLVVSPTGSNVDFVG--------

Query:  ----------------DQSLKIVPIASNMIFRLDPKVRGSDVSDKESPTVANDELSLQEKADK
                         QSLKIVPIASNMIFRLDP++RGSDVS+ ESP+V N+ELS+QEKA+K
Subjt:  ----------------DQSLKIVPIASNMIFRLDPKVRGSDVSDKESPTVANDELSLQEKADK

A0A6J1HM51 DNA-directed RNA polymerase I subunit rpa49-like

8.4e-49

71.7

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Query:  AKKKKKSE-KKKRVPSVNAKIQVLSNHPEKTPPLVGYFPSGFDPYKDADEEAVQEQNSMRARVYRNKNKPNRMQLVVSPTGSNVDFVG------------
        AKKKKKSE KKKRVP VN KIQVLSNHPEK PPLVGYFPSG+DP KD +EE V+EQNS+RA+VYR+K KPNRMQLVVSPTGSNVDFVG            
Subjt:  AKKKKKSE-KKKRVPSVNAKIQVLSNHPEKTPPLVGYFPSGFDPYKDADEEAVQEQNSMRARVYRNKNKPNRMQLVVSPTGSNVDFVG------------

Query:  ------------DQSLKIVPIASNMIFRLDPKVRGSDVSDKESPTVANDELSLQEKADK
                     QSLKIVPIASNMIFRLDPKVRGSDV + ESP+VANDELS+QEKAD+
Subjt:  ------------DQSLKIVPIASNMIFRLDPKVRGSDVSDKESPTVANDELSLQEKADK

A0A6J1JX25 DNA-directed RNA polymerase I subunit rpa49-like

2.2e-49

72.33

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Query:  AKKKKKSE-KKKRVPSVNAKIQVLSNHPEKTPPLVGYFPSGFDPYKDADEEAVQEQNSMRARVYRNKNKPNRMQLVVSPTGSNVDFVG------------
        AKKKKKSE KKKRVPSVNAKIQVLSNHP+KTPPLV YFPSGFDP+KDA+EEAV+EQ+S+RARVYR+KNKPNRMQLVVSPTGSNVDFVG            
Subjt:  AKKKKKSE-KKKRVPSVNAKIQVLSNHPEKTPPLVGYFPSGFDPYKDADEEAVQEQNSMRARVYRNKNKPNRMQLVVSPTGSNVDFVG------------

Query:  ------------DQSLKIVPIASNMIFRLDPKVRGSDVSDKESPTVANDELSLQEKADK
                     QSLKIVPIASNMIFRLDP++RGSDVS+ ES +V N+ELS+QEKA+K
Subjt:  ------------DQSLKIVPIASNMIFRLDPKVRGSDVSDKESPTVANDELSLQEKADK

A0A6J1KIP6 DNA-directed RNA polymerase I subunit rpa49-like

7.2e-48

69.43

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Query:  KKKKKSEKKKRVPSVNAKIQVLSNHPEKTPPLVGYFPSGFDPYKDADEEAVQEQNSMRARVYRNKNKPNRMQLVVSPTGSNVDFVG--------------
        KKKK  +KKKRVP VN KIQVLSNHPEK PPLVGYFPSG+DP KD +EEAV+EQNS+RA+VYR+K KPNRMQL+VSPTGSNVDFVG              
Subjt:  KKKKKSEKKKRVPSVNAKIQVLSNHPEKTPPLVGYFPSGFDPYKDADEEAVQEQNSMRARVYRNKNKPNRMQLVVSPTGSNVDFVG--------------

Query:  ----------DQSLKIVPIASNMIFRLDPKVRGSDVSDKESPTVANDELSLQEKADK
                   QSLKIVPIASNMIFRLDPKV GSDV + ESP+VANDELS+QEKAD+
Subjt:  ----------DQSLKIVPIASNMIFRLDPKVRGSDVSDKESPTVANDELSLQEKADK

SwissProt top hits	e value	%identity	Alignment
No hits found

Arabidopsis top hits

e value

%identity

Alignment

AT3G13940.1 DNA binding;DNA-directed RNA polymerases

1.0e-09

27.89

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Query:  KLTATAKKKKKSEKKKRVPSVNAKIQVLSNHPEKTPPLVGYFPSGFDPYKDADEEAVQEQNSMRARVYRNK-NKPNRMQLVVSPTGSNVDFVGD------
        K  AT  + +  E K+    V  K+  ++  P++  P+V YF +G+DP K   +   +   + +  VY++K +   R+Q+VVSP G+ V+FVG       
Subjt:  KLTATAKKKKKSEKKKRVPSVNAKIQVLSNHPEKTPPLVGYFPSGFDPYKDADEEAVQEQNSMRARVYRNK-NKPNRMQLVVSPTGSNVDFVGD------

Query:  -----------------QSLKIVPIASNMIFRLDPKVRGSDVSDKES
                         ++L+I+P+A N I RL+P+V+  + +++E+
Subjt:  -----------------QSLKIVPIASNMIFRLDPKVRGSDVSDKES

Sequences

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CDS sequence

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ATGGGCTGGGCCGTATCCTTGATTTATTCTGGGCCTGGGCTTCGCTCCCGGCCTAGGTTAGATCTCTTCCTCGCCTTCTTCTCCTTCATGGAATTCATCTTCTGCAACTT
CAAATCGGCTCTGAATCTTGCAATGAAGTTATCGGCTTTACTGTTAACATCCGGGCTTGAACAGAACATGGGAGTTGTTGAATCTTTCACGAGCCTCCTTTCGCTGGTCG
CCGGTGGGCCATCGGCTTCACTCTCGTCCATGTCCGGCGAGACGGCTCTGGGAGTACTGCTATTGCTTCCGATACTGACGAAATCTCCATGTCTGACAAATTTCCAGTCT
GACGTTTTGAAAGGTGGCGGCGGCGGCGGTGGAGGAATCGGATGGAATGGCGACTCACCTCCAGTGCGCGTATTGTACTCTTCGTCATTTAAACTGCTCAGTTCTGAGGA
GGCTACTGAAGGTGGTGGCGGCTCTGGCGGCGGTACGGACTGTCCTTTCTTGCCTTTCCCTTTCTTGGAAGAGAATAGATTTTGCAAAACTGACGGCGGAGGAAGTGGCG
GAGGAGGAGGAGGTGACGGTGGTGGCAATGACGATGTAGAAGGGCGTTGGGAGTGCGGTCCAGAATTCTTTTGTATTGCCGCCTCTCTTCTTCTCGTTTTTGCTGCTCTT
CTGCTCCGATTCCTGATAAAACGACGGCGGCGAGAGTGGTGGAAGCTGAATTCGTTGAAAATCCGCTACGTCCGAATCGCCATTATTGTGCTGTTGATCAATTTCTCCAT
CGGGCGTATGGGCGTCTTAGCGGGAGGGGGAGGGGTTGGGGGCGGTGATGGAGATCGCGGAGGAGACACCCGCGGAGGCGGCGACTGCGGCGGAGAAGCTCCGGCCGATC
TTCACGATGACGATGAAGCTGATCGGATGCCGGAAGCCGATGGCGCTGGAGTTGAGGAGGAAAGACGATGCGCGGCTGAGGCGACGGCGGCGATTGTAGTCGACTTGGTG
TGGGGAGTTGGAGGACTGAAGCCAGAATGGCGGCGGCGCGTTGTGCTCTTCCTCCATTGTCGCCGCCCGCGCACGGCCAGCCCTAACCTGCCGCGCCTTCGCTCCCTCAG
TTTGGCTCTTCAGTCGCACTCTTCACTCTGCCAATCGATCTCTCAAACGCCTCTCTCCATCTTCCTTTCGCGGCTGCTAATGGTGAAGAAGCCATTACGCAGAACCAGAA
TCAAACTCACAGCTACAGCGAAGAAGAAGAAGAAGAGTGAAAAGAAGAAGCGAGTTCCATCAGTGAATGCCAAAATCCAAGTCCTTAGCAACCATCCAGAGAAAACTCCA
CCGCTAGTTGGTTATTTCCCGTCTGGGTTTGATCCTTACAAAGATGCCGATGAGGAAGCAGTCCAGGAACAGAATTCCATGAGGGCTAGGGTCTATAGGAACAAGAACAA
GCCAAATAGGATGCAGCTGGTTGTAAGTCCAACAGGGTCGAATGTGGATTTTGTTGGCGACCAGAGCTTAAAGATTGTGCCTATTGCATCAAACATGATATTTAGATTGG
ATCCCAAAGTCAGAGGTTCAGATGTTTCTGACAAGGAATCTCCAACTGTAGCAAATGACGAGCTTTCTTTGCAGGAGAAAGCTGATAAATGA

mRNA sequence

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Protein sequence

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MGWAVSLIYSGPGLRSRPRLDLFLAFFSFMEFIFCNFKSALNLAMKLSALLLTSGLEQNMGVVESFTSLLSLVAGGPSASLSSMSGETALGVLLLLPILTKSPCLTNFQS
DVLKGGGGGGGGIGWNGDSPPVRVLYSSSFKLLSSEEATEGGGGSGGGTDCPFLPFPFLEENRFCKTDGGGSGGGGGGDGGGNDDVEGRWECGPEFFCIAASLLLVFAAL
LLRFLIKRRRREWWKLNSLKIRYVRIAIIVLLINFSIGRMGVLAGGGGVGGGDGDRGGDTRGGGDCGGEAPADLHDDDEADRMPEADGAGVEEERRCAAEATAAIVVDLV
WGVGGLKPEWRRRVVLFLHCRRPRTASPNLPRLRSLSLALQSHSSLCQSISQTPLSIFLSRLLMVKKPLRRTRIKLTATAKKKKKSEKKKRVPSVNAKIQVLSNHPEKTP
PLVGYFPSGFDPYKDADEEAVQEQNSMRARVYRNKNKPNRMQLVVSPTGSNVDFVGDQSLKIVPIASNMIFRLDPKVRGSDVSDKESPTVANDELSLQEKADK

Sgr025306 (gene) of Monk fruit (Qingpiguo) v1 genome