| GenBank top hits | e value | %identity | Alignment |
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| KAG6593746.1 RNA polymerase sigma factor sigB, partial [Cucurbita argyrosperma subsp. sororia] | 2.2e-260 | 80.41 | Show/hide |
Query: PTEFNFNAFIYVSHSYSVAEPSWRTKKKKKKKKKAMSCLLPQFKCHPETFSIQFKATAITI--TTTTNYSHHHSFLPTANSSYTAKVRDPHSLRTQCILS
P+ ++FIYV HS +AEPSWRT K K K KAMSCLLPQFKCHPETFSIQFK AITI T T SHHH+FLPTANS+Y KVRDPHSLRTQCILS
Subjt: PTEFNFNAFIYVSHSYSVAEPSWRTKKKKKKKKKAMSCLLPQFKCHPETFSIQFKATAITI--TTTTNYSHHHSFLPTANSSYTAKVRDPHSLRTQCILS
Query: ATSPSTSMGTATAFINVDRLKLPPLDSNTDSVSAERLRSYLGAVESSLASTLLTSEEATIAAAAAEAVTLAKAAVKVAKDAALLVNNSNSSRTGTKSQSS
A SP TS GTAT F NVDRLKLPP D+NTDSVSAERLRSYLGAVESSLASTLLTSEEATIAAAAAEAV LAKAAVK A DAALLVNNSNS+R+ TKSQSS
Subjt: ATSPSTSMGTATAFINVDRLKLPPLDSNTDSVSAERLRSYLGAVESSLASTLLTSEEATIAAAAAEAVTLAKAAVKVAKDAALLVNNSNSSRTGTKSQSS
Query: PKSEALHCKWAQFMESERADIIGEPVGVDNRPTEGDALQHGTAESDHTEPTSEELELLQIELSKSIAVRSRRQTERRARRTRAAEKTAASVVSVKSGSSS
+S ALH KW QFMESERADIIGEPVGV+NRP EGDAL+ TAESD EPTSEELELL+ E SKSIAVRS RQTER+ARRTRA+EK A SVVS+KSGSSS
Subjt: PKSEALHCKWAQFMESERADIIGEPVGVDNRPTEGDALQHGTAESDHTEPTSEELELLQIELSKSIAVRSRRQTERRARRTRAAEKTAASVVSVKSGSSS
Query: RKKRNSLQEVDYSDPLRYLRATTSTSRLLTATEELDLMLFVNINGYFDGLTE--TGKAPGGACRTVWKRANLCTMGCGAGVNQRTLRKRLNYGTFCKDKM
RKKRNS QEVDY+DPLRYLRATTS S+LLTA++EL+L + + L E G+ W A AGVNQRTLRKRLNYGT CKDKM
Subjt: RKKRNSLQEVDYSDPLRYLRATTSTSRLLTATEELDLMLFVNINGYFDGLTE--TGKAPGGACRTVWKRANLCTMGCGAGVNQRTLRKRLNYGTFCKDKM
Query: IKSNIRLVISIAKNYQGVGMNLQDLVQEGCRGLVRGAEKFDASKGFKFSTYAHWWIRQAVRKSLSDQSRTIRLPFHMVEATYRVKEARKQLYSENGRHPD
IKSNIRLVISIAKNYQG GMNLQDLVQEGCRGLVRGAEKFDASKGFKFSTYAHWWI+QAVRKSLSDQSRTIRLPFHMVEATY+VKEARKQLY+ NGR P+
Subjt: IKSNIRLVISIAKNYQGVGMNLQDLVQEGCRGLVRGAEKFDASKGFKFSTYAHWWIRQAVRKSLSDQSRTIRLPFHMVEATYRVKEARKQLYSENGRHPD
Query: DEEIAEAAGLSMKRLAAVLMTPKAPRSLEQKIGINQNLKPSEVISDPEAETSEDLLIKQFMKQDLEKVLNSLNPRERQVIRWRFGMEDGRMKTLQEIGEI
DEEIA AAGLSMKRLA VLMTPKAPRSLEQK GINQNLKPSEVISDPEA T+EDLLIKQFMKQ+LEKVL+SLNPRERQ+IRWR+GMEDGRMKTLQEIGE+
Subjt: DEEIAEAAGLSMKRLAAVLMTPKAPRSLEQKIGINQNLKPSEVISDPEAETSEDLLIKQFMKQDLEKVLNSLNPRERQVIRWRFGMEDGRMKTLQEIGEI
Query: MGVSRERIRQIESCAFRKLKNKKRTKHLQQYLM
MGVSRERIRQIE CAFRKLKNKKRTKHLQQYLM
Subjt: MGVSRERIRQIESCAFRKLKNKKRTKHLQQYLM
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| XP_022155781.1 RNA polymerase sigma factor sigB [Momordica charantia] | 9.6e-272 | 87.39 | Show/hide |
Query: MSCLLPQFKCHPETFSIQFKATAITITTTTNYSHHHSFLPTANSSYTAKVRDPHSLRTQCILSATSPSTSMGTATAFINVDRLKLPPLDSNTDSVSAERL
MSCLLPQFKCHPETFSIQFK TAIT+TTT NYSHHH+FLPTANSS T KVRDPHSLRTQCILSA SPSTS GTAT F NV+RLKLPPLD+NTDS+SAERL
Subjt: MSCLLPQFKCHPETFSIQFKATAITITTTTNYSHHHSFLPTANSSYTAKVRDPHSLRTQCILSATSPSTSMGTATAFINVDRLKLPPLDSNTDSVSAERL
Query: RSYLGAVESSLASTLLTSEEATIAAAAAEAVTLAKAAVKVAKDAALLVNNSNSSRTGTKSQSSPKSEALHCKWAQFMESERADIIGEPVGVDNRPTEGDA
RSYL AVESS ASTLLTSEEATIAAAAAEAVTLAKAAVKVAKDAALLVNNSNSS+TG KSQSS KS+ALH KW QFMESERADIIG PVGV+NRP EGDA
Subjt: RSYLGAVESSLASTLLTSEEATIAAAAAEAVTLAKAAVKVAKDAALLVNNSNSSRTGTKSQSSPKSEALHCKWAQFMESERADIIGEPVGVDNRPTEGDA
Query: LQHGTAESDHTEPTSEELELLQIELSKSIAVRSRRQTERRARRTRAAEKTAASVVSVKSGSSSRKKRNSLQEVDYSDPLRYLRATTSTSRLLTATEELDL
LQH TAESD+T+PT+EELELLQ ELS +IAVRSRRQTERRA+RTRAAEK A SVVSVKSGSSSRKKRNS+QEVDYSDPLRYLRATTS SRLLTATEEL+L
Subjt: LQHGTAESDHTEPTSEELELLQIELSKSIAVRSRRQTERRARRTRAAEKTAASVVSVKSGSSSRKKRNSLQEVDYSDPLRYLRATTSTSRLLTATEELDL
Query: MLFVNINGYFDGLTETGKAPGGACRTVWKRANLCTMGCGAGVNQRTLRKRLNYGTFCKDKMIKSNIRLVISIAKNYQGVGMNLQDLVQEGCRGLVRGAEK
+ + L E + G K AGVNQRTLRKRLNYGTFCKDKMIKSNIRLVISIAKNYQG GMNLQDLVQEGCRGLVRGAEK
Subjt: MLFVNINGYFDGLTETGKAPGGACRTVWKRANLCTMGCGAGVNQRTLRKRLNYGTFCKDKMIKSNIRLVISIAKNYQGVGMNLQDLVQEGCRGLVRGAEK
Query: FDASKGFKFSTYAHWWIRQAVRKSLSDQSRTIRLPFHMVEATYRVKEARKQLYSENGRHPDDEEIAEAAGLSMKRLAAVLMTPKAPRSLEQKIGINQNLK
FDASKGFKFSTYAHWWI+QAVRKSLSDQSRTIRLPFHMVEATYRVKEARKQLYSENGRHPDDEEIAEAAGLSMKRLAAVLMTPKAPRSLEQKIGINQNLK
Subjt: FDASKGFKFSTYAHWWIRQAVRKSLSDQSRTIRLPFHMVEATYRVKEARKQLYSENGRHPDDEEIAEAAGLSMKRLAAVLMTPKAPRSLEQKIGINQNLK
Query: PSEVISDPEAETSEDLLIKQFMKQDLEKVLNSLNPRERQVIRWRFGMEDGRMKTLQEIGEIMGVSRERIRQIESCAFRKLKNKKRTKHLQQYLMS
PSEVISDPEAETSEDLLIKQFMKQDLEKVL+SLNPRERQVIRWRFGMEDGRMKTLQEIGEIMGVSRERIRQIESCAFRKLKNKKRTKHLQQYLMS
Subjt: PSEVISDPEAETSEDLLIKQFMKQDLEKVLNSLNPRERQVIRWRFGMEDGRMKTLQEIGEIMGVSRERIRQIESCAFRKLKNKKRTKHLQQYLMS
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| XP_022964550.1 RNA polymerase sigma factor sigB [Cucurbita moschata] | 7.6e-261 | 80.51 | Show/hide |
Query: PTEFNFNAFIYVSHSYSVAEPSWRTKKKKKKKKKAMSCLLPQFKCHPETFSIQFKATAITITTTTNYSHHHSFLPTANSSYTAKVRDPHSLRTQCILSAT
P+ + FIYV HS +AEPSWRT K K K KAMSCLLPQFKCHPETFSIQFK A TIT T SHHH+FLPTANS+Y K RDPHSLRTQCILSA
Subjt: PTEFNFNAFIYVSHSYSVAEPSWRTKKKKKKKKKAMSCLLPQFKCHPETFSIQFKATAITITTTTNYSHHHSFLPTANSSYTAKVRDPHSLRTQCILSAT
Query: SPSTSMGTATAFINVDRLKLPPLDSNTDSVSAERLRSYLGAVESSLASTLLTSEEATIAAAAAEAVTLAKAAVKVAKDAALLVNNSNSSRTGTKSQSSPK
SP T GTAT F NVDRLKLPP D+NTDSVSAERLRSYLGAVESSLASTLLTSEEATIAAAAAEAV LAKAAVK A DAALLVNNSNSSR+ TKSQSS +
Subjt: SPSTSMGTATAFINVDRLKLPPLDSNTDSVSAERLRSYLGAVESSLASTLLTSEEATIAAAAAEAVTLAKAAVKVAKDAALLVNNSNSSRTGTKSQSSPK
Query: SEALHCKWAQFMESERADIIGEPVGVDNRPTEGDALQHGTAESDHTEPTSEELELLQIELSKSIAVRSRRQTERRARRTRAAEKTAASVVSVKSGSSSRK
S ALH KW QFMESERADIIGEPVGV+NRP EGDAL+ TAESD EPTSEELELL+ E SKSIAVRS RQTER+ARRTRA+EK A SVVS+KSGSSSRK
Subjt: SEALHCKWAQFMESERADIIGEPVGVDNRPTEGDALQHGTAESDHTEPTSEELELLQIELSKSIAVRSRRQTERRARRTRAAEKTAASVVSVKSGSSSRK
Query: KRNSLQEVDYSDPLRYLRATTSTSRLLTATEELDLMLFVNINGYFDGLTE--TGKAPGGACRTVWKRANLCTMGCGAGVNQRTLRKRLNYGTFCKDKMIK
KRNS QEVDY+DPLRYLRATTS S+LLTA++EL+L + + L E G+ W A AGVNQRTLRKRLNYGTFCKDKMIK
Subjt: KRNSLQEVDYSDPLRYLRATTSTSRLLTATEELDLMLFVNINGYFDGLTE--TGKAPGGACRTVWKRANLCTMGCGAGVNQRTLRKRLNYGTFCKDKMIK
Query: SNIRLVISIAKNYQGVGMNLQDLVQEGCRGLVRGAEKFDASKGFKFSTYAHWWIRQAVRKSLSDQSRTIRLPFHMVEATYRVKEARKQLYSENGRHPDDE
SNIRLVISIAKNYQG GMNLQDLVQEGCRGLVRGAEKFDASKGFKFSTYAHWWI+QAVRKSLSDQSRTIRLPFHMVEATY+VKEARKQLY+ NGR P+DE
Subjt: SNIRLVISIAKNYQGVGMNLQDLVQEGCRGLVRGAEKFDASKGFKFSTYAHWWIRQAVRKSLSDQSRTIRLPFHMVEATYRVKEARKQLYSENGRHPDDE
Query: EIAEAAGLSMKRLAAVLMTPKAPRSLEQKIGINQNLKPSEVISDPEAETSEDLLIKQFMKQDLEKVLNSLNPRERQVIRWRFGMEDGRMKTLQEIGEIMG
EIA AAGLSMKRLA VLMTPKAPRSLEQK GINQNLKPSEVISDPEA T+EDLLIKQFMKQ+LEKVL+SLNPRERQ+IRWR+GMEDGRMKTLQEIGE+MG
Subjt: EIAEAAGLSMKRLAAVLMTPKAPRSLEQKIGINQNLKPSEVISDPEAETSEDLLIKQFMKQDLEKVLNSLNPRERQVIRWRFGMEDGRMKTLQEIGEIMG
Query: VSRERIRQIESCAFRKLKNKKRTKHLQQYLM
VSRERIRQIE CAFRKLKNKKRTKHLQQYLM
Subjt: VSRERIRQIESCAFRKLKNKKRTKHLQQYLM
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| XP_023515004.1 RNA polymerase sigma factor sigB [Cucurbita pepo subsp. pepo] | 7.6e-261 | 80.41 | Show/hide |
Query: PTEFNFNAFIYVSHSYSVAEPSWRTKKKKKKKKKAMSCLLPQFKCHPETFSIQFKATAITI--TTTTNYSHHHSFLPTANSSYTAKVRDPHSLRTQCILS
P+ ++FIYV HS +AEPSWRT K K K KAMSCLLPQFKCHPETFSIQFK AITI T T SHHH+FLPTANS+Y KVRDPH LRTQCILS
Subjt: PTEFNFNAFIYVSHSYSVAEPSWRTKKKKKKKKKAMSCLLPQFKCHPETFSIQFKATAITI--TTTTNYSHHHSFLPTANSSYTAKVRDPHSLRTQCILS
Query: ATSPSTSMGTATAFINVDRLKLPPLDSNTDSVSAERLRSYLGAVESSLASTLLTSEEATIAAAAAEAVTLAKAAVKVAKDAALLVNNSNSSRTGTKSQSS
A SP TS GTAT F NVDRLKLPP D+NTDSVSAERLRSYLGAVESSLASTLLTSEEATIAAAAAEAV LAKAAVK A DAALLVNNSNS+R+ TKSQSS
Subjt: ATSPSTSMGTATAFINVDRLKLPPLDSNTDSVSAERLRSYLGAVESSLASTLLTSEEATIAAAAAEAVTLAKAAVKVAKDAALLVNNSNSSRTGTKSQSS
Query: PKSEALHCKWAQFMESERADIIGEPVGVDNRPTEGDALQHGTAESDHTEPTSEELELLQIELSKSIAVRSRRQTERRARRTRAAEKTAASVVSVKSGSSS
+S ALH KW QFMESERADIIGEPVGV+NRP EGDAL+ TAESD EPTSEELELL+ E SKSIAVRS RQTER+ARRTRA+EK A SVVS+KSGSSS
Subjt: PKSEALHCKWAQFMESERADIIGEPVGVDNRPTEGDALQHGTAESDHTEPTSEELELLQIELSKSIAVRSRRQTERRARRTRAAEKTAASVVSVKSGSSS
Query: RKKRNSLQEVDYSDPLRYLRATTSTSRLLTATEELDLMLFVNINGYFDGLTE--TGKAPGGACRTVWKRANLCTMGCGAGVNQRTLRKRLNYGTFCKDKM
RKKRNS QEVDY+DPLRYLRATTS S+LLTA++EL+L + + L E G+ W A AGVNQRTLRKRLNYGTFCKDKM
Subjt: RKKRNSLQEVDYSDPLRYLRATTSTSRLLTATEELDLMLFVNINGYFDGLTE--TGKAPGGACRTVWKRANLCTMGCGAGVNQRTLRKRLNYGTFCKDKM
Query: IKSNIRLVISIAKNYQGVGMNLQDLVQEGCRGLVRGAEKFDASKGFKFSTYAHWWIRQAVRKSLSDQSRTIRLPFHMVEATYRVKEARKQLYSENGRHPD
IKSNIRLVISIAKNYQG GMNLQDLVQEGCRGLVRGAEKFDASKGFKFSTYAHWWI+QAVRKSLSDQSRTIRLPFHMVEATY+VKEARKQLY+ NGR P+
Subjt: IKSNIRLVISIAKNYQGVGMNLQDLVQEGCRGLVRGAEKFDASKGFKFSTYAHWWIRQAVRKSLSDQSRTIRLPFHMVEATYRVKEARKQLYSENGRHPD
Query: DEEIAEAAGLSMKRLAAVLMTPKAPRSLEQKIGINQNLKPSEVISDPEAETSEDLLIKQFMKQDLEKVLNSLNPRERQVIRWRFGMEDGRMKTLQEIGEI
DEEIA AAGLSMKRLA VLMTPKAPRSLEQK GINQNLKPSEVISDPEA T+EDLLIKQFMKQ+LEKVL+SLNPRERQ+IRWR+GMEDGRMKTLQEIGE+
Subjt: DEEIAEAAGLSMKRLAAVLMTPKAPRSLEQKIGINQNLKPSEVISDPEAETSEDLLIKQFMKQDLEKVLNSLNPRERQVIRWRFGMEDGRMKTLQEIGEI
Query: MGVSRERIRQIESCAFRKLKNKKRTKHLQQYLM
MGVSRERIRQIE CAFRKLKNKKRTKHLQQYLM
Subjt: MGVSRERIRQIESCAFRKLKNKKRTKHLQQYLM
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| XP_038875580.1 RNA polymerase sigma factor sigB isoform X1 [Benincasa hispida] | 1.1e-259 | 84.23 | Show/hide |
Query: MSCLLPQFKCHPETFSIQFKATAITITTTTNYS-HHHSFLPTANSSYTAKVRDPHSLRTQCILSATSPSTSMGTATAFINVDRLKLPPLDSNTDSVSAER
MSCLLPQFKCHPETFSIQFK T NY+ HHH+FLPTANSSYT KVRDPHSLRTQCILSA SP TS GTAT +NVDRL LPP D+NTDSVS ER
Subjt: MSCLLPQFKCHPETFSIQFKATAITITTTTNYS-HHHSFLPTANSSYTAKVRDPHSLRTQCILSATSPSTSMGTATAFINVDRLKLPPLDSNTDSVSAER
Query: LRSYLGAVESSLASTLLTSEEATIAAAAAEAVTLAKAAVKVAKDAALLVNNSNSSRTGTKSQSSPKSEALHCKWAQFMESERADIIGEPVGVDNRPTEGD
LRSYLGAVESSLASTLLTSEEATIAAAAAEAV LAKAAVKVA+DAALL NNSNSSR G KS+SSP+ +ALH KWAQFMESERADIIGEPVGV+NRP E D
Subjt: LRSYLGAVESSLASTLLTSEEATIAAAAAEAVTLAKAAVKVAKDAALLVNNSNSSRTGTKSQSSPKSEALHCKWAQFMESERADIIGEPVGVDNRPTEGD
Query: ALQHGTAESDHTEPTSEELELLQIELSKSIAVRSRRQTERRARRTRAAEKTAASVVSVKSGSSSRKKRNSLQEVDYSDPLRYLRATTSTSRLLTATEELD
ALQ T +SD EPTSEELELLQ ELS+SI VRS+RQTER+ARRTRAAEKTA SVVS+KSGSSSRKKRNSLQEVDYSDPLRYLRATTSTSRLLTA EEL+
Subjt: ALQHGTAESDHTEPTSEELELLQIELSKSIAVRSRRQTERRARRTRAAEKTAASVVSVKSGSSSRKKRNSLQEVDYSDPLRYLRATTSTSRLLTATEELD
Query: LMLFVNINGYFDGLTETGKAPGGACRTVWKRANLCTMGCGAGVNQRTLRKRLNYGTFCKDKMIKSNIRLVISIAKNYQGVGMNLQDLVQEGCRGLVRGAE
L G D L + + AGVNQRTLRKRLNYGT CKDKMIKSNIRLVISIAKNYQG GMNLQDLVQEGCRGLVRGAE
Subjt: LMLFVNINGYFDGLTETGKAPGGACRTVWKRANLCTMGCGAGVNQRTLRKRLNYGTFCKDKMIKSNIRLVISIAKNYQGVGMNLQDLVQEGCRGLVRGAE
Query: KFDASKGFKFSTYAHWWIRQAVRKSLSDQSRTIRLPFHMVEATYRVKEARKQLYSENGRHPDDEEIAEAAGLSMKRLAAVLMTPKAPRSLEQKIGINQNL
KFDASKGFKFSTYAHWWI+QAVRKSLSDQSRTIRLPFHMVEATYRVKEARKQLYSENGRHPDDEEIAEAAGLSMKRLAAVLMTPKAPRSLEQKIGINQNL
Subjt: KFDASKGFKFSTYAHWWIRQAVRKSLSDQSRTIRLPFHMVEATYRVKEARKQLYSENGRHPDDEEIAEAAGLSMKRLAAVLMTPKAPRSLEQKIGINQNL
Query: KPSEVISDPEAETSEDLLIKQFMKQDLEKVLNSLNPRERQVIRWRFGMEDGRMKTLQEIGEIMGVSRERIRQIESCAFRKLKNKKRTKHLQQYLMS
KPSEVISDPEAET+ED+LIKQFMKQDLEKVL+SLNPRERQVIRWRFGMEDGRMKTLQEIGEIMGVSRERIRQIESCAFRKLKNKKRTKHLQQYL+S
Subjt: KPSEVISDPEAETSEDLLIKQFMKQDLEKVLNSLNPRERQVIRWRFGMEDGRMKTLQEIGEIMGVSRERIRQIESCAFRKLKNKKRTKHLQQYLMS
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| TrEMBL top hits | e value | %identity | Alignment |
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| A0A0A0K917 RNA polymerase sigma factor | 5.0e-258 | 83.39 | Show/hide |
Query: MSCLLPQFKCHPETFSIQFKATAITITTTTNYSHHHSFLPTANSSYTAKVRDPHSLRTQCILSATSPSTSMGTATAFINVDRLKLPPLDSNTDSVSAERL
MSCLLPQFKCHPETFSIQFK T NYSHHHSFLPTA SSYT KVRDPHSLRTQCILSA SP TS GTAT ++VDRLKLPP D+NTDSVS ERL
Subjt: MSCLLPQFKCHPETFSIQFKATAITITTTTNYSHHHSFLPTANSSYTAKVRDPHSLRTQCILSATSPSTSMGTATAFINVDRLKLPPLDSNTDSVSAERL
Query: RSYLGAVESSLASTLLTSEEATIAAAAAEAVTLAKAAVKVAKDAALLVNNSNSSRTGTKSQSSPKSEALHCKWAQFMESERADIIGEPVGVDNRPTEGDA
RSYLGAVESSLASTLLTSEEA+IAAAAAEAVTLAKAAVKVA+DAALL NN NSSR GTKSQSSPK +ALH KWAQFMESERADIIGEPVGV+ RP EGDA
Subjt: RSYLGAVESSLASTLLTSEEATIAAAAAEAVTLAKAAVKVAKDAALLVNNSNSSRTGTKSQSSPKSEALHCKWAQFMESERADIIGEPVGVDNRPTEGDA
Query: LQHGTAESDHTEPTSEELELLQIELSKSIAVRSRRQTERRARRTRAAEKTAASVVSVKSGSSSRKKRNSLQEVDYSDPLRYLRATTSTSRLLTATEELDL
L+ T ESD EPTSEELELLQ ELS+SI V+S+RQTER+ARRTRAAEKT SV+S KSGSSSRKKRNS+QEVDYSDPLRYLRATT+TSRLLTATEEL+L
Subjt: LQHGTAESDHTEPTSEELELLQIELSKSIAVRSRRQTERRARRTRAAEKTAASVVSVKSGSSSRKKRNSLQEVDYSDPLRYLRATTSTSRLLTATEELDL
Query: MLFVNINGYFDGL-TETGKAPGGACRTVWKRANLCTMGCGAGVNQRTLRKRLNYGTFCKDKMIKSNIRLVISIAKNYQGVGMNLQDLVQEGCRGLVRGAE
+ + L E G+ G AGVNQRTLRKRLNYGT CKDKMIKSNIRLVISIAKNYQG GMNLQDLVQEGCRGLVRGAE
Subjt: MLFVNINGYFDGL-TETGKAPGGACRTVWKRANLCTMGCGAGVNQRTLRKRLNYGTFCKDKMIKSNIRLVISIAKNYQGVGMNLQDLVQEGCRGLVRGAE
Query: KFDASKGFKFSTYAHWWIRQAVRKSLSDQSRTIRLPFHMVEATYRVKEARKQLYSENGRHPDDEEIAEAAGLSMKRLAAVLMTPKAPRSLEQKIGINQNL
KFDASKGFKFSTYAHWWI+QAVRK LSDQSRTIRLPFHMVEATYRVKEARKQL ENGRHPDD+EIAEAAGLSMKRLAAVLMTPKAPRSLEQKIGINQNL
Subjt: KFDASKGFKFSTYAHWWIRQAVRKSLSDQSRTIRLPFHMVEATYRVKEARKQLYSENGRHPDDEEIAEAAGLSMKRLAAVLMTPKAPRSLEQKIGINQNL
Query: KPSEVISDPEAETSEDLLIKQFMKQDLEKVLNSLNPRERQVIRWRFGMEDGRMKTLQEIGEIMGVSRERIRQIESCAFRKLKNKKRTKHLQQYLMS
KPSEVISDPEAET ED+LIKQFMKQDLEKVL+SLNPRE+QVIRWRFGMEDGRMKTLQEIGEIMGVSRERIRQIESCAFRKLKNKKRTKHLQQY+MS
Subjt: KPSEVISDPEAETSEDLLIKQFMKQDLEKVLNSLNPRERQVIRWRFGMEDGRMKTLQEIGEIMGVSRERIRQIESCAFRKLKNKKRTKHLQQYLMS
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| A0A1S3CD00 RNA polymerase sigma factor | 5.0e-258 | 83.53 | Show/hide |
Query: MSCLLPQFKCHPETFSIQFKATAITITTTTNYSHHHSFLPTANSSYTAKVRDPHSLRTQCILSATSPSTSMGTATAFINVDRLKLPPLDSNTDSVSAERL
MSCLLPQFKCHPETFSIQFK T N SHHHSF+PTA SSYT KVRDPHSLRTQCILSA SP TS GTAT +NVDRLKLPP D+NTDSVS ERL
Subjt: MSCLLPQFKCHPETFSIQFKATAITITTTTNYSHHHSFLPTANSSYTAKVRDPHSLRTQCILSATSPSTSMGTATAFINVDRLKLPPLDSNTDSVSAERL
Query: RSYLGAVESSLASTLLTSEEATIAAAAAEAVTLAKAAVKVAKDAALLVNNSNSSRTGTKSQSSPKSEALHCKWAQFMESERADIIGEPVGVDNRPTEGDA
RSYLGAVESSLASTLLTSEEATIAAAAAEAVTLAKAAVKVA+DAALL NN NSSR GTKSQ SPK +ALH KWAQFMESERADIIGEPVGV+ RP EGDA
Subjt: RSYLGAVESSLASTLLTSEEATIAAAAAEAVTLAKAAVKVAKDAALLVNNSNSSRTGTKSQSSPKSEALHCKWAQFMESERADIIGEPVGVDNRPTEGDA
Query: LQHGTAESDHTEPTSEELELLQIELSKSIAVRSRRQTERRARRTRAAEKTAASVVSVKSGSSSRKKRNSLQEVDYSDPLRYLRATTSTSRLLTATEELDL
L+ T ESD EPTS+ELELLQ ELS+SI V+S+RQTER+ARRTRAAEKT SVV KSGSSSRKKR+SLQEVDYSDPLRYLRATTSTSRLLTATEEL+L
Subjt: LQHGTAESDHTEPTSEELELLQIELSKSIAVRSRRQTERRARRTRAAEKTAASVVSVKSGSSSRKKRNSLQEVDYSDPLRYLRATTSTSRLLTATEELDL
Query: MLFVNINGYFDGLTETGKAPGGACRTVWKRANLCTMGCGAGVNQRTLRKRLNYGTFCKDKMIKSNIRLVISIAKNYQGVGMNLQDLVQEGCRGLVRGAEK
G D L + + AGVNQRTLRKRLNYGT CKDKMIKSNIRLVISIAKNYQG GMNLQDLVQEGCRGLVRGAEK
Subjt: MLFVNINGYFDGLTETGKAPGGACRTVWKRANLCTMGCGAGVNQRTLRKRLNYGTFCKDKMIKSNIRLVISIAKNYQGVGMNLQDLVQEGCRGLVRGAEK
Query: FDASKGFKFSTYAHWWIRQAVRKSLSDQSRTIRLPFHMVEATYRVKEARKQLYSENGRHPDDEEIAEAAGLSMKRLAAVLMTPKAPRSLEQKIGINQNLK
FDASKGFKFSTYAHWWI+QAVRK LSDQSRTIRLPFHMVEATYRVKEARKQL SENGRHPDD+EIAEAAGLSMKRLAAVLMTPKAPRSLEQKIGINQNLK
Subjt: FDASKGFKFSTYAHWWIRQAVRKSLSDQSRTIRLPFHMVEATYRVKEARKQLYSENGRHPDDEEIAEAAGLSMKRLAAVLMTPKAPRSLEQKIGINQNLK
Query: PSEVISDPEAETSEDLLIKQFMKQDLEKVLNSLNPRERQVIRWRFGMEDGRMKTLQEIGEIMGVSRERIRQIESCAFRKLKNKKRTKHLQQYLMS
PSEVISDPEAET+ED+LIKQFMKQDLEKVL+SLNPRE+QVIRWRFGMEDGRMKTLQEIGEIMGVSRERIRQIESCAFRKLKNKKRTKHLQQYLMS
Subjt: PSEVISDPEAETSEDLLIKQFMKQDLEKVLNSLNPRERQVIRWRFGMEDGRMKTLQEIGEIMGVSRERIRQIESCAFRKLKNKKRTKHLQQYLMS
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| A0A6J1DSR7 RNA polymerase sigma factor | 4.6e-272 | 87.39 | Show/hide |
Query: MSCLLPQFKCHPETFSIQFKATAITITTTTNYSHHHSFLPTANSSYTAKVRDPHSLRTQCILSATSPSTSMGTATAFINVDRLKLPPLDSNTDSVSAERL
MSCLLPQFKCHPETFSIQFK TAIT+TTT NYSHHH+FLPTANSS T KVRDPHSLRTQCILSA SPSTS GTAT F NV+RLKLPPLD+NTDS+SAERL
Subjt: MSCLLPQFKCHPETFSIQFKATAITITTTTNYSHHHSFLPTANSSYTAKVRDPHSLRTQCILSATSPSTSMGTATAFINVDRLKLPPLDSNTDSVSAERL
Query: RSYLGAVESSLASTLLTSEEATIAAAAAEAVTLAKAAVKVAKDAALLVNNSNSSRTGTKSQSSPKSEALHCKWAQFMESERADIIGEPVGVDNRPTEGDA
RSYL AVESS ASTLLTSEEATIAAAAAEAVTLAKAAVKVAKDAALLVNNSNSS+TG KSQSS KS+ALH KW QFMESERADIIG PVGV+NRP EGDA
Subjt: RSYLGAVESSLASTLLTSEEATIAAAAAEAVTLAKAAVKVAKDAALLVNNSNSSRTGTKSQSSPKSEALHCKWAQFMESERADIIGEPVGVDNRPTEGDA
Query: LQHGTAESDHTEPTSEELELLQIELSKSIAVRSRRQTERRARRTRAAEKTAASVVSVKSGSSSRKKRNSLQEVDYSDPLRYLRATTSTSRLLTATEELDL
LQH TAESD+T+PT+EELELLQ ELS +IAVRSRRQTERRA+RTRAAEK A SVVSVKSGSSSRKKRNS+QEVDYSDPLRYLRATTS SRLLTATEEL+L
Subjt: LQHGTAESDHTEPTSEELELLQIELSKSIAVRSRRQTERRARRTRAAEKTAASVVSVKSGSSSRKKRNSLQEVDYSDPLRYLRATTSTSRLLTATEELDL
Query: MLFVNINGYFDGLTETGKAPGGACRTVWKRANLCTMGCGAGVNQRTLRKRLNYGTFCKDKMIKSNIRLVISIAKNYQGVGMNLQDLVQEGCRGLVRGAEK
+ + L E + G K AGVNQRTLRKRLNYGTFCKDKMIKSNIRLVISIAKNYQG GMNLQDLVQEGCRGLVRGAEK
Subjt: MLFVNINGYFDGLTETGKAPGGACRTVWKRANLCTMGCGAGVNQRTLRKRLNYGTFCKDKMIKSNIRLVISIAKNYQGVGMNLQDLVQEGCRGLVRGAEK
Query: FDASKGFKFSTYAHWWIRQAVRKSLSDQSRTIRLPFHMVEATYRVKEARKQLYSENGRHPDDEEIAEAAGLSMKRLAAVLMTPKAPRSLEQKIGINQNLK
FDASKGFKFSTYAHWWI+QAVRKSLSDQSRTIRLPFHMVEATYRVKEARKQLYSENGRHPDDEEIAEAAGLSMKRLAAVLMTPKAPRSLEQKIGINQNLK
Subjt: FDASKGFKFSTYAHWWIRQAVRKSLSDQSRTIRLPFHMVEATYRVKEARKQLYSENGRHPDDEEIAEAAGLSMKRLAAVLMTPKAPRSLEQKIGINQNLK
Query: PSEVISDPEAETSEDLLIKQFMKQDLEKVLNSLNPRERQVIRWRFGMEDGRMKTLQEIGEIMGVSRERIRQIESCAFRKLKNKKRTKHLQQYLMS
PSEVISDPEAETSEDLLIKQFMKQDLEKVL+SLNPRERQVIRWRFGMEDGRMKTLQEIGEIMGVSRERIRQIESCAFRKLKNKKRTKHLQQYLMS
Subjt: PSEVISDPEAETSEDLLIKQFMKQDLEKVLNSLNPRERQVIRWRFGMEDGRMKTLQEIGEIMGVSRERIRQIESCAFRKLKNKKRTKHLQQYLMS
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| A0A6J1HL45 RNA polymerase sigma factor sigB | 3.7e-261 | 80.51 | Show/hide |
Query: PTEFNFNAFIYVSHSYSVAEPSWRTKKKKKKKKKAMSCLLPQFKCHPETFSIQFKATAITITTTTNYSHHHSFLPTANSSYTAKVRDPHSLRTQCILSAT
P+ + FIYV HS +AEPSWRT K K K KAMSCLLPQFKCHPETFSIQFK A TIT T SHHH+FLPTANS+Y K RDPHSLRTQCILSA
Subjt: PTEFNFNAFIYVSHSYSVAEPSWRTKKKKKKKKKAMSCLLPQFKCHPETFSIQFKATAITITTTTNYSHHHSFLPTANSSYTAKVRDPHSLRTQCILSAT
Query: SPSTSMGTATAFINVDRLKLPPLDSNTDSVSAERLRSYLGAVESSLASTLLTSEEATIAAAAAEAVTLAKAAVKVAKDAALLVNNSNSSRTGTKSQSSPK
SP T GTAT F NVDRLKLPP D+NTDSVSAERLRSYLGAVESSLASTLLTSEEATIAAAAAEAV LAKAAVK A DAALLVNNSNSSR+ TKSQSS +
Subjt: SPSTSMGTATAFINVDRLKLPPLDSNTDSVSAERLRSYLGAVESSLASTLLTSEEATIAAAAAEAVTLAKAAVKVAKDAALLVNNSNSSRTGTKSQSSPK
Query: SEALHCKWAQFMESERADIIGEPVGVDNRPTEGDALQHGTAESDHTEPTSEELELLQIELSKSIAVRSRRQTERRARRTRAAEKTAASVVSVKSGSSSRK
S ALH KW QFMESERADIIGEPVGV+NRP EGDAL+ TAESD EPTSEELELL+ E SKSIAVRS RQTER+ARRTRA+EK A SVVS+KSGSSSRK
Subjt: SEALHCKWAQFMESERADIIGEPVGVDNRPTEGDALQHGTAESDHTEPTSEELELLQIELSKSIAVRSRRQTERRARRTRAAEKTAASVVSVKSGSSSRK
Query: KRNSLQEVDYSDPLRYLRATTSTSRLLTATEELDLMLFVNINGYFDGLTE--TGKAPGGACRTVWKRANLCTMGCGAGVNQRTLRKRLNYGTFCKDKMIK
KRNS QEVDY+DPLRYLRATTS S+LLTA++EL+L + + L E G+ W A AGVNQRTLRKRLNYGTFCKDKMIK
Subjt: KRNSLQEVDYSDPLRYLRATTSTSRLLTATEELDLMLFVNINGYFDGLTE--TGKAPGGACRTVWKRANLCTMGCGAGVNQRTLRKRLNYGTFCKDKMIK
Query: SNIRLVISIAKNYQGVGMNLQDLVQEGCRGLVRGAEKFDASKGFKFSTYAHWWIRQAVRKSLSDQSRTIRLPFHMVEATYRVKEARKQLYSENGRHPDDE
SNIRLVISIAKNYQG GMNLQDLVQEGCRGLVRGAEKFDASKGFKFSTYAHWWI+QAVRKSLSDQSRTIRLPFHMVEATY+VKEARKQLY+ NGR P+DE
Subjt: SNIRLVISIAKNYQGVGMNLQDLVQEGCRGLVRGAEKFDASKGFKFSTYAHWWIRQAVRKSLSDQSRTIRLPFHMVEATYRVKEARKQLYSENGRHPDDE
Query: EIAEAAGLSMKRLAAVLMTPKAPRSLEQKIGINQNLKPSEVISDPEAETSEDLLIKQFMKQDLEKVLNSLNPRERQVIRWRFGMEDGRMKTLQEIGEIMG
EIA AAGLSMKRLA VLMTPKAPRSLEQK GINQNLKPSEVISDPEA T+EDLLIKQFMKQ+LEKVL+SLNPRERQ+IRWR+GMEDGRMKTLQEIGE+MG
Subjt: EIAEAAGLSMKRLAAVLMTPKAPRSLEQKIGINQNLKPSEVISDPEAETSEDLLIKQFMKQDLEKVLNSLNPRERQVIRWRFGMEDGRMKTLQEIGEIMG
Query: VSRERIRQIESCAFRKLKNKKRTKHLQQYLM
VSRERIRQIE CAFRKLKNKKRTKHLQQYLM
Subjt: VSRERIRQIESCAFRKLKNKKRTKHLQQYLM
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| A0A6J1KM29 RNA polymerase sigma factor | 3.1e-252 | 82.38 | Show/hide |
Query: MSCLLPQFKCHPETFSIQFKATAITITTTTNYSHHHSFLPTANSSYTAKVRDPHSLRTQCILSATSPSTSMGTATAFINVDRLKLPPLDSNTDSVSAERL
MSCLLPQFKCHPETFSIQFK AITIT T SHHH+FLPTANS+Y KVRDPHSLRTQCILSA +TS GTAT F NVDRLKLPP D+NTDSVSAERL
Subjt: MSCLLPQFKCHPETFSIQFKATAITITTTTNYSHHHSFLPTANSSYTAKVRDPHSLRTQCILSATSPSTSMGTATAFINVDRLKLPPLDSNTDSVSAERL
Query: RSYLGAVESSLASTLLTSEEATIAAAAAEAVTLAKAAVKVAKDAALLVNNSNSSRTGTKSQSSPKSEALHCKWAQFMESERADIIGEPVGVDNRPTEGDA
RSYLGAVESSLASTLLTSEEATIAAAAAEAV LAKAAVK A DAALLVNNSNS+R+ TKSQSS KS ALH KW QFMESERADIIGEPVGV+NRP EGDA
Subjt: RSYLGAVESSLASTLLTSEEATIAAAAAEAVTLAKAAVKVAKDAALLVNNSNSSRTGTKSQSSPKSEALHCKWAQFMESERADIIGEPVGVDNRPTEGDA
Query: LQHGTAESDHTEPTSEELELLQIELSKSIAVRSRRQTERRARRTRAAEKTAASVVSVKSGSSSRKKRNSLQEVDYSDPLRYLRATTSTSRLLTATEELDL
L+ TAESD EPTSEELELLQ E SKSIAVRS RQTER+ARRTRA+EK A SVVS+KSGSSSRKKRNS QEVDY+DPLRYLRATTS S+LLTA++EL+L
Subjt: LQHGTAESDHTEPTSEELELLQIELSKSIAVRSRRQTERRARRTRAAEKTAASVVSVKSGSSSRKKRNSLQEVDYSDPLRYLRATTSTSRLLTATEELDL
Query: MLFVNINGYFDGLTE--TGKAPGGACRTVWKRANLCTMGCGAGVNQRTLRKRLNYGTFCKDKMIKSNIRLVISIAKNYQGVGMNLQDLVQEGCRGLVRGA
+ + L E G+ W A AGVNQRTLRKRLNYGTFCKDKMIKSNIRLVISIAKNYQG GMNLQDLVQEGCRGLVRGA
Subjt: MLFVNINGYFDGLTE--TGKAPGGACRTVWKRANLCTMGCGAGVNQRTLRKRLNYGTFCKDKMIKSNIRLVISIAKNYQGVGMNLQDLVQEGCRGLVRGA
Query: EKFDASKGFKFSTYAHWWIRQAVRKSLSDQSRTIRLPFHMVEATYRVKEARKQLYSENGRHPDDEEIAEAAGLSMKRLAAVLMTPKAPRSLEQKIGINQN
EKFDASKGFKFSTYAHWWI+QAVRKSLSDQSRTIRLPFHMVEATY+VKEARKQLY+ NGR P DEEIA AAGLSMKRLA VLMTPKAPRSLEQK GINQN
Subjt: EKFDASKGFKFSTYAHWWIRQAVRKSLSDQSRTIRLPFHMVEATYRVKEARKQLYSENGRHPDDEEIAEAAGLSMKRLAAVLMTPKAPRSLEQKIGINQN
Query: LKPSEVISDPEAETSEDLLIKQFMKQDLEKVLNSLNPRERQVIRWRFGMEDGRMKTLQEIGEIMGVSRERIRQIESCAFRKLKNKKRTKHLQQYLM
LKPSEVISDPEA T+EDLLIKQFMKQ+LEKVL+SLNPRERQ+IRWR+GMEDGRMKTLQEIGE+MGVSRERIRQIE CAFRKLKNKKRTKHLQQYLM
Subjt: LKPSEVISDPEAETSEDLLIKQFMKQDLEKVLNSLNPRERQVIRWRFGMEDGRMKTLQEIGEIMGVSRERIRQIESCAFRKLKNKKRTKHLQQYLM
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| SwissProt top hits | e value | %identity | Alignment |
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| O22056 RNA polymerase sigma factor sigB | 3.0e-167 | 57.75 | Show/hide |
Query: SCLLPQFKCHPETFSIQFKATAITITTTTNYSHHHSFLPTANSSYTAKVRDPHSL--RTQCILSATSPSTSMGTATAFINVDRLKLPPLDSNTDSVSAER
SCLLPQFKC P++FSI F+ +S+ A + S+ + QC + STS T+ ++V +L+LP D+++DS+ ++R
Subjt: SCLLPQFKCHPETFSIQFKATAITITTTTNYSHHHSFLPTANSSYTAKVRDPHSL--RTQCILSATSPSTSMGTATAFINVDRLKLPPLDSNTDSVSAER
Query: LRSYLGA---------VESSLASTLLTSEEATIAAAAAEAVTLAKAAVKVAKDAALLVNNSNSSRTGTKSQSSPKSEALHCKWAQFMESERADIIGEPVG
+Y +E+ + TLLTS+EA + AAAAEAV LA+AAVKVAKDA L NSN++ T S + +S KW QF E ERA I+G
Subjt: LRSYLGA---------VESSLASTLLTSEEATIAAAAAEAVTLAKAAVKVAKDAALLVNNSNSSRTGTKSQSSPKSEALHCKWAQFMESERADIIGEPVG
Query: VDNRPTEGDALQHGTAESDHTE-------PTSEELELLQIELSKSIAVRSRRQTERRARRTRAAEKTAASVVSVKSGSSSRKKRNSLQEVDYSDPLRYLR
DN G TA + + E EE+ELL+ + S S+AVRS RQTER+ARR + EKTA+ + SVK+GSS +KKR QEVD++DPLRYLR
Subjt: VDNRPTEGDALQHGTAESDHTE-------PTSEELELLQIELSKSIAVRSRRQTERRARRTRAAEKTAASVVSVKSGSSSRKKRNSLQEVDYSDPLRYLR
Query: ATTSTSRLLTATEELDLMLFVNINGYFDGL-TETGKAPGGACRTVWKRANLCTMGCGAGVNQRTLRKRLNYGTFCKDKMIKSNIRLVISIAKNYQGVGMN
TTS+S+LLT EE +L + + L TE + G ++ AGV+Q++LR+R+++GT CKDKMIKSNIRLVISIAKNYQG GMN
Subjt: ATTSTSRLLTATEELDLMLFVNINGYFDGL-TETGKAPGGACRTVWKRANLCTMGCGAGVNQRTLRKRLNYGTFCKDKMIKSNIRLVISIAKNYQGVGMN
Query: LQDLVQEGCRGLVRGAEKFDASKGFKFSTYAHWWIRQAVRKSLSDQSRTIRLPFHMVEATYRVKEARKQLYSENGRHPDDEEIAEAAGLSMKRLAAVLMT
LQDLVQEGCRGLVRGAEKFDA+KGFKFSTYAHWWI+QAVRKSLSDQSR IRLPFHMVEATYRVKEARKQLYSE G+HP +EEIAEA GLSMKRL AVL++
Subjt: LQDLVQEGCRGLVRGAEKFDASKGFKFSTYAHWWIRQAVRKSLSDQSRTIRLPFHMVEATYRVKEARKQLYSENGRHPDDEEIAEAAGLSMKRLAAVLMT
Query: PKAPRSLEQKIGINQNLKPSEVISDPEAETSEDLLIKQFMKQDLEKVLNSLNPRERQVIRWRFGMEDGRMKTLQEIGEIMGVSRERIRQIESCAFRKLKN
PK PRSL+QKIG+NQNLKPSEVI+DPEA TSED+LIK+FM+QDL+KVL+SL RE+QVIRWRFGMEDGRMKTLQEIGE+MGVSRER+RQIES AFRKLKN
Subjt: PKAPRSLEQKIGINQNLKPSEVISDPEAETSEDLLIKQFMKQDLEKVLNSLNPRERQVIRWRFGMEDGRMKTLQEIGEIMGVSRERIRQIESCAFRKLKN
Query: KKRTKHLQQYLMS
KKR HLQQYL++
Subjt: KKRTKHLQQYLMS
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| P26683 RNA polymerase sigma factor SigA | 3.6e-64 | 42.11 | Show/hide |
Query: KSGSSSRKKRNSLQEVDY--SDPLRYLRATTSTSRLLTATEELDLML----FVNINGYFDGLTETGKAPGGACRTVWKRANLCTMGCGAGVNQRTLRKRL
KSG +++ +R + + + D +R RLL A EE++L + + + L+E K + W A + R RL
Subjt: KSGSSSRKKRNSLQEVDY--SDPLRYLRATTSTSRLLTATEELDLML----FVNINGYFDGLTETGKAPGGACRTVWKRANLCTMGCGAGVNQRTLRKRL
Query: NYGTFCKDKMIKSNIRLVISIAKNYQGVGMNLQDLVQEGCRGLVRGAEKFDASKGFKFSTYAHWWIRQAVRKSLSDQSRTIRLPFHMVEATYRVKEARKQ
+ G KDKM++SN+RLV+SIAK Y G++ QDL+QEG GL+R AEKFD KG+KFSTYA WWIRQA+ ++++DQSRTIRLP H+ E R+K+ K
Subjt: NYGTFCKDKMIKSNIRLVISIAKNYQGVGMNLQDLVQEGCRGLVRGAEKFDASKGFKFSTYAHWWIRQAVRKSLSDQSRTIRLPFHMVEATYRVKEARKQ
Query: LYSENGRHPDDEEIAEAAGLSMKRLAAVLMTPKAPRSLEQKIGINQNLKPSEVISDPEAETSEDLLIKQFMKQDLEKVLNSLNPRERQVIRWRFGMEDGR
L E GR P +EEIA +++++L + + + P SLE IG ++ + + I + + ET ED + K +++DLEKVL+SL+PRER V+R R+G++DGR
Subjt: LYSENGRHPDDEEIAEAAGLSMKRLAAVLMTPKAPRSLEQKIGINQNLKPSEVISDPEAETSEDLLIKQFMKQDLEKVLNSLNPRERQVIRWRFGMEDGR
Query: MKTLQEIGEIMGVSRERIRQIESCAFRKLKNKKRTKHLQQYL
MKTL+EIG+I V+RERIRQIE+ A RKL++ R L++Y+
Subjt: MKTLQEIGEIMGVSRERIRQIESCAFRKLKNKKRTKHLQQYL
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| P38023 RNA polymerase sigma factor SigA1 | 6.9e-63 | 50 | Show/hide |
Query: RKRLNYGTFCKDKMIKSNIRLVISIAKNYQGVGMNLQDLVQEGCRGLVRGAEKFDASKGFKFSTYAHWWIRQAVRKSLSDQSRTIRLPFHMVEATYRVKE
R+RL G KDKM++SN+RLV+SIAK Y G++ QDL+QEG GL+R AEKFD KG+KFSTYA WWIRQA+ ++++DQSRTIRLP H+ E R+K+
Subjt: RKRLNYGTFCKDKMIKSNIRLVISIAKNYQGVGMNLQDLVQEGCRGLVRGAEKFDASKGFKFSTYAHWWIRQAVRKSLSDQSRTIRLPFHMVEATYRVKE
Query: ARKQLYSENGRHPDDEEIAEAAGLSMKRLAAVLMTPKAPRSLEQKIGINQNLKPSEVISDPEAETSEDLLIKQFMKQDLEKVLNSLNPRERQVIRWRFGM
K L E GR P +EEIA +++++L + + + P SLE IG ++ + + I + + ET ED + K +++DLE VL++L+PRER V+R R+G+
Subjt: ARKQLYSENGRHPDDEEIAEAAGLSMKRLAAVLMTPKAPRSLEQKIGINQNLKPSEVISDPEAETSEDLLIKQFMKQDLEKVLNSLNPRERQVIRWRFGM
Query: EDGRMKTLQEIGEIMGVSRERIRQIESCAFRKLKNKKRTKHLQQYL
+DGRMKTL+EIG++ V+RERIRQIE+ A RKL++ R L++Y+
Subjt: EDGRMKTLQEIGEIMGVSRERIRQIESCAFRKLKNKKRTKHLQQYL
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| P52322 RNA polymerase sigma factor SigA | 5.8e-62 | 49.19 | Show/hide |
Query: RKRLNYGTFCKDKMIKSNIRLVISIAKNYQGVGMNLQDLVQEGCRGLVRGAEKFDASKGFKFSTYAHWWIRQAVRKSLSDQSRTIRLPFHMVEATYRVKE
++RL +G K+KM++SN+RLV+SIAK Y G++ QDL+QEG GL+R AEKFD KG+KFSTYA WWIRQA+ ++++DQSRTIRLP H+ E R+K+
Subjt: RKRLNYGTFCKDKMIKSNIRLVISIAKNYQGVGMNLQDLVQEGCRGLVRGAEKFDASKGFKFSTYAHWWIRQAVRKSLSDQSRTIRLPFHMVEATYRVKE
Query: ARKQLYSENGRHPDDEEIAEAAGLSMKRLAAVLMTPKAPRSLEQKIGINQNLKPSEVISDPEAETSEDLLIKQFMKQDLEKVLNSLNPRERQVIRWRFGM
K L E R P +EEIA +++++L + + + P SLE IG ++ + + I + + ET ED + K +++DLE VL++L+PRER V+R R+G+
Subjt: ARKQLYSENGRHPDDEEIAEAAGLSMKRLAAVLMTPKAPRSLEQKIGINQNLKPSEVISDPEAETSEDLLIKQFMKQDLEKVLNSLNPRERQVIRWRFGM
Query: EDGRMKTLQEIGEIMGVSRERIRQIESCAFRKLKNKKRTKHLQQYL
+DGRMKTL+EIG+I V+RERIRQIE+ A RKL++ R L++Y+
Subjt: EDGRMKTLQEIGEIMGVSRERIRQIESCAFRKLKNKKRTKHLQQYL
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| P74565 RNA polymerase sigma factor SigA | 1.5e-62 | 49.4 | Show/hide |
Query: NQRTLRKRLNYGTFCKDKMIKSNIRLVISIAKNYQGVGMNLQDLVQEGCRGLVRGAEKFDASKGFKFSTYAHWWIRQAVRKSLSDQSRTIRLPFHMVEAT
N R+RL KDKM++SN+RLV+SIAK Y G++ QDL+QEG GL+R AEKFD KG+KFSTYA WWIRQA+ ++++DQSRTIRLP H+ E
Subjt: NQRTLRKRLNYGTFCKDKMIKSNIRLVISIAKNYQGVGMNLQDLVQEGCRGLVRGAEKFDASKGFKFSTYAHWWIRQAVRKSLSDQSRTIRLPFHMVEAT
Query: YRVKEARKQLYSENGRHPDDEEIAEAAGLSMKRLAAVLMTPKAPRSLEQKIGINQNLKPSEVISDPEAETSEDLLIKQFMKQDLEKVLNSLNPRERQVIR
R+K+ K L E R P +EEIAE +++++L + + + P SLE IG ++ + + I + + ET ED + K +++DLE VL++L+PRER V+R
Subjt: YRVKEARKQLYSENGRHPDDEEIAEAAGLSMKRLAAVLMTPKAPRSLEQKIGINQNLKPSEVISDPEAETSEDLLIKQFMKQDLEKVLNSLNPRERQVIR
Query: WRFGMEDGRMKTLQEIGEIMGVSRERIRQIESCAFRKLKNKKRTKHLQQYL
R+G++DGRMKTL+EIG+I V+RERIRQIE+ A RKL++ R L++Y+
Subjt: WRFGMEDGRMKTLQEIGEIMGVSRERIRQIESCAFRKLKNKKRTKHLQQYL
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| Arabidopsis top hits | e value | %identity | Alignment |
|---|
| AT1G08540.1 RNApolymerase sigma subunit 2 | 2.1e-168 | 57.75 | Show/hide |
Query: SCLLPQFKCHPETFSIQFKATAITITTTTNYSHHHSFLPTANSSYTAKVRDPHSL--RTQCILSATSPSTSMGTATAFINVDRLKLPPLDSNTDSVSAER
SCLLPQFKC P++FSI F+ +S+ A + S+ + QC + STS T+ ++V +L+LP D+++DS+ ++R
Subjt: SCLLPQFKCHPETFSIQFKATAITITTTTNYSHHHSFLPTANSSYTAKVRDPHSL--RTQCILSATSPSTSMGTATAFINVDRLKLPPLDSNTDSVSAER
Query: LRSYLGA---------VESSLASTLLTSEEATIAAAAAEAVTLAKAAVKVAKDAALLVNNSNSSRTGTKSQSSPKSEALHCKWAQFMESERADIIGEPVG
+Y +E+ + TLLTS+EA + AAAAEAV LA+AAVKVAKDA L NSN++ T S + +S KW QF E ERA I+G
Subjt: LRSYLGA---------VESSLASTLLTSEEATIAAAAAEAVTLAKAAVKVAKDAALLVNNSNSSRTGTKSQSSPKSEALHCKWAQFMESERADIIGEPVG
Query: VDNRPTEGDALQHGTAESDHTE-------PTSEELELLQIELSKSIAVRSRRQTERRARRTRAAEKTAASVVSVKSGSSSRKKRNSLQEVDYSDPLRYLR
DN G TA + + E EE+ELL+ + S S+AVRS RQTER+ARR + EKTA+ + SVK+GSS +KKR QEVD++DPLRYLR
Subjt: VDNRPTEGDALQHGTAESDHTE-------PTSEELELLQIELSKSIAVRSRRQTERRARRTRAAEKTAASVVSVKSGSSSRKKRNSLQEVDYSDPLRYLR
Query: ATTSTSRLLTATEELDLMLFVNINGYFDGL-TETGKAPGGACRTVWKRANLCTMGCGAGVNQRTLRKRLNYGTFCKDKMIKSNIRLVISIAKNYQGVGMN
TTS+S+LLT EE +L + + L TE + G ++ AGV+Q++LR+R+++GT CKDKMIKSNIRLVISIAKNYQG GMN
Subjt: ATTSTSRLLTATEELDLMLFVNINGYFDGL-TETGKAPGGACRTVWKRANLCTMGCGAGVNQRTLRKRLNYGTFCKDKMIKSNIRLVISIAKNYQGVGMN
Query: LQDLVQEGCRGLVRGAEKFDASKGFKFSTYAHWWIRQAVRKSLSDQSRTIRLPFHMVEATYRVKEARKQLYSENGRHPDDEEIAEAAGLSMKRLAAVLMT
LQDLVQEGCRGLVRGAEKFDA+KGFKFSTYAHWWI+QAVRKSLSDQSR IRLPFHMVEATYRVKEARKQLYSE G+HP +EEIAEA GLSMKRL AVL++
Subjt: LQDLVQEGCRGLVRGAEKFDASKGFKFSTYAHWWIRQAVRKSLSDQSRTIRLPFHMVEATYRVKEARKQLYSENGRHPDDEEIAEAAGLSMKRLAAVLMT
Query: PKAPRSLEQKIGINQNLKPSEVISDPEAETSEDLLIKQFMKQDLEKVLNSLNPRERQVIRWRFGMEDGRMKTLQEIGEIMGVSRERIRQIESCAFRKLKN
PK PRSL+QKIG+NQNLKPSEVI+DPEA TSED+LIK+FM+QDL+KVL+SL RE+QVIRWRFGMEDGRMKTLQEIGE+MGVSRER+RQIES AFRKLKN
Subjt: PKAPRSLEQKIGINQNLKPSEVISDPEAETSEDLLIKQFMKQDLEKVLNSLNPRERQVIRWRFGMEDGRMKTLQEIGEIMGVSRERIRQIESCAFRKLKN
Query: KKRTKHLQQYLMS
KKR HLQQYL++
Subjt: KKRTKHLQQYLMS
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| AT1G64860.1 sigma factor A | 4.8e-35 | 36.44 | Show/hide |
Query: KDKMIKSNIRLVISIAKNYQGVGMNLQDLVQEGCRGLVRGAEKFDASKGFKFSTYAHWWIRQAVRKSLSDQSRTIRLPFHMVEATYRVKEARKQLYSENG
++K+ SN+RLV+SIA+ Y +G + DLVQ G GL+RG EKFD+SKGF+ STY +WWIRQ V ++L D SRT+RLP H+ E ++ A+ +L E G
Subjt: KDKMIKSNIRLVISIAKNYQGVGMNLQDLVQEGCRGLVRGAEKFDASKGFKFSTYAHWWIRQAVRKSLSDQSRTIRLPFHMVEATYRVKEARKQLYSENG
Query: RHPDDEEIAEAAGLSMKRLAAVLMTPKAPRSLEQKIGINQNLKPSEV----ISDPEAETS-----EDLLIKQFMKQDLEKVLN-SLNPRERQVIRWRFGM
P + IAE+ +S K++ SL++ + N P E I+D E + +DL +K+++ K+++ +L RE+++IR +G+
Subjt: RHPDDEEIAEAAGLSMKRLAAVLMTPKAPRSLEQKIGINQNLKPSEV----ISDPEAETS-----EDLLIKQFMKQDLEKVLN-SLNPRERQVIRWRFGM
Query: EDGRMKTLQEIGEIMGVSRERIRQIESCAFRKLKNKKRTKHLQQYLM
D T ++I + +G+SRER+RQ+ A KLK+ R + ++ ++
Subjt: EDGRMKTLQEIGEIMGVSRERIRQIESCAFRKLKNKKRTKHLQQYLM
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| AT2G36990.1 RNApolymerase sigma-subunit F | 1.4e-55 | 36.34 | Show/hide |
Query: KSIAVRSRRQTERRARRTRAAEKTAASVVSVKSGSSSRKKRNSLQEVDYSDPLRYLRATTSTSRLLTATEELDLMLFVNINGYFDGLTETGKAPGGACRT
K VRS+RQ ERRA+ RA + +S KK+ Q D D L+ T +LLTA EE +L+ + + + ++ G T
Subjt: KSIAVRSRRQTERRARRTRAAEKTAASVVSVKSGSSSRKKRNSLQEVDYSDPLRYLRATTSTSRLLTATEELDLMLFVNINGYFDGLTETGKAPGGACRT
Query: VWKRANLCTMGCGAGVNQRTLRKRLNYGTFCKDKMIKSNIRLVISIAKNYQGVGMNLQDLVQEGCRGLVRGAEKFDASKGFKFSTYAHWWIRQAVRKSLS
+ + A G++ L+ ++ G ++K+I +N+RLV+ IAK YQ G+N QDL+QEG GL++ EKF G +F+TYA+WWIRQ++RKS+
Subjt: VWKRANLCTMGCGAGVNQRTLRKRLNYGTFCKDKMIKSNIRLVISIAKNYQGVGMNLQDLVQEGCRGLVRGAEKFDASKGFKFSTYAHWWIRQAVRKSLS
Query: DQSRTIRLPFHMVEATYRVKEARKQLYSENGRHPDDEEIAEAAGLSMKRLAAVLMTPKAPRSLEQKIGINQNLKPSEVISDPEAETSEDLLIKQFMKQDL
SRTIRLP ++ +V EARK E P EE+A G+S ++L +L + P S++Q I +Q+ E+ D ET + KQ M+ +
Subjt: DQSRTIRLPFHMVEATYRVKEARKQLYSENGRHPDDEEIAEAAGLSMKRLAAVLMTPKAPRSLEQKIGINQNLKPSEVISDPEAETSEDLLIKQFMKQDL
Query: EKVLNSLNPRERQVIRWRFGMEDGRMKTLQEIGEIMGVSRERIRQIESCAFRKLKNKKRTKHLQQY
+LN L+P+ER++I+ RFG++ G+ ++L EIGEI G+S+ER+RQ+ES A +LK + L Y
Subjt: EKVLNSLNPRERQVIRWRFGMEDGRMKTLQEIGEIMGVSRERIRQIESCAFRKLKNKKRTKHLQQY
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| AT3G53920.1 RNApolymerase sigma-subunit C | 8.4e-48 | 31.3 | Show/hide |
Query: SDHTEPTSEELELLQIELSKSIAVRSRRQTERRARRTRAAEKTAASVVSVKSGSSS------RKKRNSLQEVDYSDPLRYLRATTSTSRLLTATEELDLM
S T S+ EL+ ++ + V SRR+ +++ARR S V+ ++G S R N++ P +Y + SR E ++
Subjt: SDHTEPTSEELELLQIELSKSIAVRSRRQTERRARRTRAAEKTAASVVSVKSGSSS------RKKRNSLQEVDYSDPLRYLRATTSTSRLLTATEELDLM
Query: LFVNINGYFDGLTETGKAPGGACRTVWKRANLCTMGCGAGVNQRTLRKRLNYGTFCKDKMIKSNIRLVISIAKNYQGVGMNLQDLVQEGCRGLVRGAEKF
V I + + + G K A+L AG+N++ L + L+YG +C+D+++KS LV+ +A+NY+G+G+ +DL+Q G G+++GAE+F
Subjt: LFVNINGYFDGLTETGKAPGGACRTVWKRANLCTMGCGAGVNQRTLRKRLNYGTFCKDKMIKSNIRLVISIAKNYQGVGMNLQDLVQEGCRGLVRGAEKF
Query: DASKGFKFSTYAHWWIRQAVRKSLSDQSRTIRLPFHMVEATYRVKEARKQLYSENG-RHPDDEEIAEAAGLSMKRLAAVLMTPKAPRSLEQKIGINQNLK
D ++G+KFSTY +WIR+++ +S +R + +P ++ +++ARK L + +G ++ DEEIA+ G S+K++ A K S+++K+G K
Subjt: DASKGFKFSTYAHWWIRQAVRKSLSDQSRTIRLPFHMVEATYRVKEARKQLYSENG-RHPDDEEIAEAAGLSMKRLAAVLMTPKAPRSLEQKIGINQNLK
Query: PSEVISDPEAETSEDLLIKQFMKQDLEKVLNSLNPRERQVIRWRFGMEDGRMKTLQEIGEIMGVSRERIRQIESCAFRKLKNKKRTKHLQQYL
E D E+ E+ +++Q ++D+ +L L PRE+QV+ R+G++D R K+L+EIG+++ VS+E IR+IE A KL+++ + L+ YL
Subjt: PSEVISDPEAETSEDLLIKQFMKQDLEKVLNSLNPRERQVIRWRFGMEDGRMKTLQEIGEIMGVSRERIRQIESCAFRKLKNKKRTKHLQQYL
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| AT5G13730.1 sigma factor 4 | 7.3e-44 | 36.54 | Show/hide |
Query: MGCGAGVNQRTLRKRLNYGTFCKDKMIKSNIRLVISIAKNYQGVGMNLQDLVQEGCRGLVRGAEKFDASKGFKFSTYAHWWIRQAVRKSLSDQSRTIRLP
+ G G +R+ + L ++K+ + RLV+SIA YQG G+NLQDL+QEG GL+RGAE+FD +G+K STY +WWI+QA+ ++++ +SR ++LP
Subjt: MGCGAGVNQRTLRKRLNYGTFCKDKMIKSNIRLVISIAKNYQGVGMNLQDLVQEGCRGLVRGAEKFDASKGFKFSTYAHWWIRQAVRKSLSDQSRTIRLP
Query: FHMVEATYRVKEARKQLYSENGRHPDDEEIAEAAGLSMKRLAAVLMTPKAPRSLEQKIGINQNLKPSEVISDPEAETSEDLLIKQFMKQDLEKVLNSLNP
M E T +V EA L + R P EEIAE L++ + + ++P SL++ N + E++ P+ E+++ ++ MK ++E++L SL
Subjt: FHMVEATYRVKEARKQLYSENGRHPDDEEIAEAAGLSMKRLAAVLMTPKAPRSLEQKIGINQNLKPSEVISDPEAETSEDLLIKQFMKQDLEKVLNSLNP
Query: RERQVIRWRFGMEDGRMKTLQEIGEIMGVSRERIRQIESCAFRKLKNKKRTKHLQQYLMS
RE +V+ FG+ + +EIG+ + +SRER+RQI A +KL+N L+ Y S
Subjt: RERQVIRWRFGMEDGRMKTLQEIGEIMGVSRERIRQIESCAFRKLKNKKRTKHLQQYLMS
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